Literature DB >> 31473911

Whole-Genome Sequencing of an Uncommon Cryptococcus neoformans MLST43 Genotype Isolated in Nigeria.

Nnaemeka Emmanuel Nnadi1, Domenico Giosa2, Grace Mebi Ayanbimpe3, Enrico D'Alessandro4, Riccardo Aiese Cigliano5, Christian Uchechukwu Oheri6, John Chinyereze Aguiyi6, Ifeoma Bessie Enweani7, Orazio Romeo8.   

Abstract

Cryptococcosis is a human infection caused mainly by two species of the Cryptococcus genus, Cryptococcus neoformans and Cryptococcus gattii, whose populations contain several phylogenetically related haploid (VN/VG-types) and hybrid genotypes. Here, we report the whole-genome sequencing of a Nigerian C. neoformans VNII, Mat-α, strain with a rare multilocus-sequence-type (MLST) genotype (ST43).

Entities:  

Keywords:  C. neoformans; Cryptococcosis; Cryptococcus; Next-generation sequencing; Whole-genome assembly

Mesh：

Year:  2019        PMID： 31473911     DOI： 10.1007/s11046-019-00376-1

Source DB:  PubMed          Journal:  Mycopathologia        ISSN： 0301-486X            Impact factor:   2.574


  12 in total

1.  Tandem repeats finder: a program to analyze DNA sequences.

Authors:  G Benson
Journal:  Nucleic Acids Res       Date:  1999-01-15       Impact factor: 16.971

2.  MycopathologiaGENOMES: The New 'Home' for the Publication of Fungal Genomes.

Authors:  Micheál Mac Aogáin; Vishnu Chaturvedi; Sanjay H Chotirmall
Journal:  Mycopathologia       Date:  2019-08-10       Impact factor: 2.574

3.  Environmental isolation of Cryptococcus gattii serotype B, VGI/MATα strains in southern Italy.

Authors:  Orazio Romeo; Fabio Scordino; Giuseppe Criseo
Journal:  Mycopathologia       Date:  2011-01-21       Impact factor: 2.574

4.  Molecular characterization of environmental Cryptococcus neoformans VNII isolates in Jos, Plateau State, Nigeria.

Authors:  N E Nnadi; I B Enweani; M Cogliati; G M Ayanbimpe; M O Okolo; E Kim; M Z Sabitu; G Criseo; O Romeo; F Scordino
Journal:  J Mycol Med       Date:  2016-05-12       Impact factor: 2.391

5.  MITOS: improved de novo metazoan mitochondrial genome annotation.

Authors:  Matthias Bernt; Alexander Donath; Frank Jühling; Fabian Externbrink; Catherine Florentz; Guido Fritzsch; Joern Pütz; Martin Middendorf; Peter F Stadler
Journal:  Mol Phylogenet Evol       Date:  2012-09-07       Impact factor: 4.286

6.  MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects.

Authors:  Carson Holt; Mark Yandell
Journal:  BMC Bioinformatics       Date:  2011-12-22       Impact factor: 3.307

7.  AUGUSTUS: a web server for gene prediction in eukaryotes that allows user-defined constraints.

Authors:  Mario Stanke; Burkhard Morgenstern
Journal:  Nucleic Acids Res       Date:  2005-07-01       Impact factor: 16.971

8.  Analysis of the genome and transcriptome of Cryptococcus neoformans var. grubii reveals complex RNA expression and microevolution leading to virulence attenuation.

Authors:  Guilhem Janbon; Kate L Ormerod; Damien Paulet; Edmond J Byrnes; Vikas Yadav; Gautam Chatterjee; Nandita Mullapudi; Chung-Chau Hon; R Blake Billmyre; François Brunel; Yong-Sun Bahn; Weidong Chen; Yuan Chen; Eve W L Chow; Jean-Yves Coppée; Anna Floyd-Averette; Claude Gaillardin; Kimberly J Gerik; Jonathan Goldberg; Sara Gonzalez-Hilarion; Sharvari Gujja; Joyce L Hamlin; Yen-Ping Hsueh; Giuseppe Ianiri; Steven Jones; Chinnappa D Kodira; Lukasz Kozubowski; Woei Lam; Marco Marra; Larry D Mesner; Piotr A Mieczkowski; Frédérique Moyrand; Kirsten Nielsen; Caroline Proux; Tristan Rossignol; Jacqueline E Schein; Sheng Sun; Carolin Wollschlaeger; Ian A Wood; Qiandong Zeng; Cécile Neuvéglise; Carol S Newlon; John R Perfect; Jennifer K Lodge; Alexander Idnurm; Jason E Stajich; James W Kronstad; Kaustuv Sanyal; Joseph Heitman; James A Fraser; Christina A Cuomo; Fred S Dietrich
Journal:  PLoS Genet       Date:  2014-04-17       Impact factor: 5.917

9.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

10.  Careful with That Axe, Gene, Genome Perturbation after a PEG-Mediated Protoplast Transformation in Fusarium verticillioides.

Authors:  Valeria Scala; Alessandro Grottoli; Riccardo Aiese Cigliano; Irantzu Anzar; Marzia Beccaccioli; Corrado Fanelli; Chiara Dall'Asta; Paola Battilani; Massimo Reverberi; Walter Sanseverino
Journal:  Toxins (Basel)       Date:  2017-05-31       Impact factor: 4.546
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