Literature DB >> 31472895

Species identification of poisonous medicinal plant using DNA barcoding.

Miao Liu1, Xi-Wen Li2, Bao-Sheng Liao3, Lu Luo3, Yue-Ying Ren4.   

Abstract

The aim is to select a universal DNA barcode for identifying all poisonous medicinal plants in Chinese pharmacopoeia and their poisonous related species or adulterants. We chose 4 commonly used regions as candidate DNA barcodes (ITS2, psbA-trnH, matK and rbcL) and compared their identification efficiency in 106 species from 27 families and 65 genera totally. Data analysis was performed including the information of sequence alignment, inter/intra-specific genetic distance and data distribution, identification efficiency and the situation of Neighbor-Joining (NJ) phylogenetic trees. We found ITS2 sequence region had high variation, stable genetic distance and identification efficiency relatively. The topological structure of NJ phylogenetic tree showed monophyletic. Our findings show that ITS2 can be applied as a universal barcode for identifying poisonous medicinal plants in Chinese pharmacopoeia and their poisonous related species or adulterants.
Copyright © 2019 China Pharmaceutical University. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Blast; DNA barcoding; Genetic distance; ITS2; Poisonous herbal medicine; Sequence

Year:  2019        PMID: 31472895     DOI: 10.1016/S1875-5364(19)30060-3

Source DB:  PubMed          Journal:  Chin J Nat Med        ISSN: 1875-5364


  6 in total

1.  rbcL, a potential candidate DNA barcode loci for aconites: conservation of himalayan aconites.

Authors:  Ranjana K Negi; Pooja Nautiyal; Rajneesh Bhatia; Rakesh Verma
Journal:  Mol Biol Rep       Date:  2021-09-02       Impact factor: 2.316

2.  Cannabis Seeds Authentication by Chloroplast and Nuclear DNA Analysis Coupled with High-Resolution Melting Method for Quality Control Purposes.

Authors:  Leonardo Anabalón; Jaime Solano; Francisco Encina-Montoya; Marco Bustos; Alejandra Figueroa; David Gangitano
Journal:  Cannabis Cannabinoid Res       Date:  2021-06-17

3.  The Complete Chloroplast Genome Sequences of Eight Fagopyrum Species: Insights Into Genome Evolution and Phylogenetic Relationships.

Authors:  Yu Fan; Ya'nan Jin; Mengqi Ding; Yu Tang; Jianping Cheng; Kaixuan Zhang; Meiliang Zhou
Journal:  Front Plant Sci       Date:  2021-12-15       Impact factor: 5.753

4.  Developing an efficient DNA barcoding system to differentiate between Lilium species.

Authors:  Yixin Liu; Mingfang Zhang; Xuqing Chen; Xi Chen; Yue Hu; Junlian Gao; Wenqiang Pan; Yin Xin; Jian Wu; Yunpeng Du; Xiuhai Zhang
Journal:  BMC Plant Biol       Date:  2021-10-13       Impact factor: 4.215

5.  Genetic Diversity and Identification of Vietnamese Paphiopedilum Species Using DNA Sequences.

Authors:  Huyen-Trang Vu; Quoc-Luan Vu; Thanh-Diem Nguyen; Ngan Tran; Thanh-Cong Nguyen; Phuong-Nam Luu; Duy-Duong Tran; Truong-Khoa Nguyen; Ly Le
Journal:  Biology (Basel)       Date:  2019-12-31

6.  Discrimination of Gentiana and Its Related Species Using IR Spectroscopy Combined with Feature Selection and Stacked Generalization.

Authors:  Tao Shen; Hong Yu; Yuan-Zhong Wang
Journal:  Molecules       Date:  2020-03-23       Impact factor: 4.411

  6 in total

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