Literature DB >> 31470233

The conditional nature of gene essentiality.

Katherine E Larrimore1, Giulia Rancati2.   

Abstract

Essential genes are classically defined as required for cellular viability and reproductive success. Despite this deceptively simple definition, several lines of evidence suggest that gene essentiality is instead a conditional trait. Indeed, gene essentiality has been shown to depend on the environmental and genetic context as well as the variable ability of cells to acquire adaptive mutations to survive inactivation of seemingly essential genes. Here, we will discuss these findings and highlight the mechanisms underlying the ability of cells to survive an essential gene deletion. Also, since essential genes are prioritized as targets for anticancer therapy, we discuss emergence of bypass resistance mechanisms toward targeted therapies as the result of the conditional nature of gene essentiality. To identify targets associated to a lower risk of relapse (i.e. the return of cancer following remission), we finally call for a coordinated effort to quantify the variable nature of gene essentiality across species, cell types, and growth conditions.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Year:  2019        PMID: 31470233     DOI: 10.1016/j.gde.2019.07.015

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  6 in total

1.  A Method to Map Gene Essentiality of Human Pluripotent Stem Cells by Genome-Scale CRISPR Screens with Inducible Cas9.

Authors:  Barbara Mair; Michael Aregger; Amy H Y Tong; Katherine S K Chan; Jason Moffat
Journal:  Methods Mol Biol       Date:  2022

2.  Transcriptome Analysis in Yeast Reveals the Externality of Position Effects.

Authors:  Qian Gui; Shuyun Deng; ZhenZhen Zhou; Waifang Cao; Xin Zhang; Wenjun Shi; Xiujuan Cai; Wenbing Jiang; Zifeng Cui; Zheng Hu; Xiaoshu Chen
Journal:  Mol Biol Evol       Date:  2021-07-29       Impact factor: 16.240

3.  XGEM: Predicting Essential miRNAs by the Ensembles of Various Sequence-Based Classifiers With XGBoost Algorithm.

Authors:  Hui Min; Xiao-Hong Xin; Chu-Qiao Gao; Likun Wang; Pu-Feng Du
Journal:  Front Genet       Date:  2022-03-28       Impact factor: 4.599

4.  Rapid Intraspecies Evolution of Fitness Effects of Yeast Genes.

Authors:  Yayu Wang; Bei Jiang; Yue Wu; Xionglei He; Li Liu
Journal:  Genome Biol Evol       Date:  2022-05-03       Impact factor: 4.065

5.  A bacterial pan-genome makes gene essentiality strain-dependent and evolvable.

Authors:  Emily Rudmann; Jien Li; Federico Rosconi; Defne Surujon; Jon Anthony; Matthew Frank; Dakota S Jones; Charles Rock; Jason W Rosch; Christopher D Johnston; Tim van Opijnen
Journal:  Nat Microbiol       Date:  2022-09-12       Impact factor: 30.964

Review 6.  Improving target assessment in biomedical research: the GOT-IT recommendations.

Authors:  Christoph H Emmerich; Lorena Martinez Gamboa; Martine C J Hofmann; Marc Bonin-Andresen; Olga Arbach; Pascal Schendel; Björn Gerlach; Katja Hempel; Anton Bespalov; Ulrich Dirnagl; Michael J Parnham
Journal:  Nat Rev Drug Discov       Date:  2020-11-16       Impact factor: 112.288

  6 in total

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