Literature DB >> 31464530

Bacterial ribonucleases and their roles in RNA metabolism.

David H Bechhofer1, Murray P Deutscher2.   

Abstract

Ribonucleases (RNases) are mediators in most reactions of RNA metabolism. In recent years, there has been a surge of new information about RNases and the roles they play in cell physiology. In this review, a detailed description of bacterial RNases is presented, focusing primarily on those from Escherichia coli and Bacillus subtilis, the model Gram-negative and Gram-positive organisms, from which most of our current knowledge has been derived. Information from other organisms is also included, where relevant. In an extensive catalog of the known bacterial RNases, their structure, mechanism of action, physiological roles, genetics, and possible regulation are described. The RNase complement of E. coli and B. subtilis is compared, emphasizing the similarities, but especially the differences, between the two. Included are figures showing the three major RNA metabolic pathways in E. coli and B. subtilis and highlighting specific steps in each of the pathways catalyzed by the different RNases. This compilation of the currently available knowledge about bacterial RNases will be a useful tool for workers in the RNA field and for others interested in learning about this area.

Entities:  

Keywords:  RNases; RNA processing; RNase function; RNase mechanism; RNase regulation; RNase structure; mRNA decay

Mesh:

Substances:

Year:  2019        PMID: 31464530      PMCID: PMC6776250          DOI: 10.1080/10409238.2019.1651816

Source DB:  PubMed          Journal:  Crit Rev Biochem Mol Biol        ISSN: 1040-9238            Impact factor:   8.250


  527 in total

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Authors:  S Sousa; I Marchand; M Dreyfus
Journal:  Mol Microbiol       Date:  2001-11       Impact factor: 3.501

2.  A specific endoribonuclease, RNase P, affects gene expression of polycistronic operon mRNAs.

Authors:  Yong Li; Sidney Altman
Journal:  Proc Natl Acad Sci U S A       Date:  2003-10-29       Impact factor: 11.205

3.  Overexpression, purification, and properties of Escherichia coli ribonuclease II.

Authors:  G A Coburn; G A Mackie
Journal:  J Biol Chem       Date:  1996-01-12       Impact factor: 5.157

4.  Escherichia coli RNase R has dual activities, helicase and RNase.

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Journal:  J Bacteriol       Date:  2009-12-18       Impact factor: 3.490

5.  Global analysis of mRNA decay intermediates in Bacillus subtilis wild-type and polynucleotide phosphorylase-deletion strains.

Authors:  Bo Liu; Gintaras Deikus; Anna Bree; Sylvain Durand; Daniel B Kearns; David H Bechhofer
Journal:  Mol Microbiol       Date:  2014-08-21       Impact factor: 3.501

6.  Helicase Activity Plays a Crucial Role for RNase R Function in Vivo and for RNA Metabolism.

Authors:  Sk Tofajjen Hossain; Murray P Deutscher
Journal:  J Biol Chem       Date:  2016-03-28       Impact factor: 5.157

7.  Purification and characterization of ribonuclease M and mRNA degradation in Escherichia coli.

Authors:  V J Cannistraro; D Kennell
Journal:  Eur J Biochem       Date:  1989-05-01

8.  Elucidation of pathways of ribosomal RNA degradation: an essential role for RNase E.

Authors:  Shaheen Sulthana; Georgeta N Basturea; Murray P Deutscher
Journal:  RNA       Date:  2016-06-13       Impact factor: 4.942

9.  In Vivo Cleavage Map Illuminates the Central Role of RNase E in Coding and Non-coding RNA Pathways.

Authors:  Yanjie Chao; Lei Li; Dylan Girodat; Konrad U Förstner; Nelly Said; Colin Corcoran; Michał Śmiga; Kai Papenfort; Richard Reinhardt; Hans-Joachim Wieden; Ben F Luisi; Jörg Vogel
Journal:  Mol Cell       Date:  2017-01-05       Impact factor: 17.970

10.  The crystal structure of the Escherichia coli RNase E apoprotein and a mechanism for RNA degradation.

Authors:  Daniel J Koslover; Anastasia J Callaghan; Maria J Marcaida; Elspeth F Garman; Monika Martick; William G Scott; Ben F Luisi
Journal:  Structure       Date:  2008-08-06       Impact factor: 5.006

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4.  Levels and Characteristics of mRNAs in Spores of Firmicute Species.

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5.  Gene Regulation and Transcriptomics.

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Journal:  Curr Issues Mol Biol       Date:  2020-12-10       Impact factor: 2.081

6.  Polynucleotide phosphorylase and RNA helicase CshA cooperate in Bacillus subtilis mRNA decay.

Authors:  Shakti Ingle; Shivani Chhabra; Denise Laspina; Elizabeth Salvo; Bo Liu; David H Bechhofer
Journal:  RNA Biol       Date:  2020-12-31       Impact factor: 4.652

7.  A nucleotidyltransferase toxin inhibits growth of Mycobacterium tuberculosis through inactivation of tRNA acceptor stems.

Authors:  Yiming Cai; Ben Usher; Claude Gutierrez; Anastasia Tolcan; Moise Mansour; Peter C Fineran; Ciarán Condon; Olivier Neyrolles; Pierre Genevaux; Tim R Blower
Journal:  Sci Adv       Date:  2020-07-29       Impact factor: 14.136

8.  A fluorescence-based genetic screen reveals diverse mechanisms silencing small RNA signaling in E. coli.

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9.  Tandem Repeats in Bacillus: Unique Features and Taxonomic Distribution.

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Journal:  Int J Mol Sci       Date:  2021-05-20       Impact factor: 5.923

10.  Expression of Human ACE2 N-terminal Domain, Part of the Receptor for SARS-CoV-2, in Fusion With Maltose-Binding Protein, E. coli Ribonuclease I and Human RNase A.

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