Literature DB >> 31457399

JRgui: A Python Program of Joback and Reid Method.

Chenyang Shi1, Thomas B Borchardt1.   

Abstract

Using the modern object-oriented programing language Python (e.g., tkinter and pandas modules) and a chemoinformatics open-source library (RDKit), the classic Joback and Reid group contribution method was revisited and written into a graphical user interface program, JRgui. The underlying algorithm behind the program is explained, herein, with the users being able to operate the program in either a manual or automatic mode. In the manual mode, the users are required to determine the type and occurrence of functional groups in the compound of interest and manually enter into the program. In the automatic mode, both of these parameters can be detected automatically via user input of the compound simplified molecular input line entry specification (SMILES) string. An additional advantage of the automatic mode is that a large number of molecules can be processed simultaneously by parsing their individual SMILES strings into a text file, which is read by the program. The resulting predicted physical properties along with approximately 200 molecular descriptors are saved in a spreadsheet file for subsequent analysis. The program is available for free at https://github.com/curieshicy/JRgui for Windows, Linux, and macOS 64-bit operating systems. It is hoped that the current work may facilitate the creation of other user-friendly programs in the chemoinformatics community using Python.

Entities:  

Year:  2017        PMID: 31457399      PMCID: PMC6645593          DOI: 10.1021/acsomega.7b01464

Source DB:  PubMed          Journal:  ACS Omega        ISSN: 2470-1343


  2 in total

1.  Assigning the Origin of Microbial Natural Products by Chemical Space Map and Machine Learning.

Authors:  Alice Capecchi; Jean-Louis Reymond
Journal:  Biomolecules       Date:  2020-09-28

2.  A Multi-Label Classifier for Predicting the Most Appropriate Instrumental Method for the Analysis of Contaminants of Emerging Concern.

Authors:  Nikiforos Alygizakis; Vasileios Konstantakos; Grigoris Bouziotopoulos; Evangelos Kormentzas; Jaroslav Slobodnik; Nikolaos S Thomaidis
Journal:  Metabolites       Date:  2022-02-23
  2 in total

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