Literature DB >> 31451715

Bioinformatics of nanopore sequencing.

Wojciech Makałowski1, Victoria Shabardina2.   

Abstract

Nanopore sequencing is one of the most exciting new technologies that undergo dynamic development. With its development, a growing number of analytical tools are becoming available for researchers. To help them better navigate this ever changing field, we discuss a range of software available to analyze sequences obtained using nanopore technology.

Mesh：

Year:  2019        PMID： 31451715     DOI： 10.1038/s10038-019-0659-4

Source DB:  PubMed          Journal:  J Hum Genet        ISSN： 1434-5161            Impact factor:   3.172


  7 in total

Review 1.  Nanopore Sequencing in Blood Diseases: A Wide Range of Opportunities.

Authors:  Crescenzio Francesco Minervini; Cosimo Cumbo; Paola Orsini; Luisa Anelli; Antonella Zagaria; Giorgina Specchia; Francesco Albano
Journal:  Front Genet       Date:  2020-02-19       Impact factor: 4.599

Review 2.  Human Long Noncoding RNA Interactome: Detection, Characterization and Function.

Authors:  Marek Kazimierczyk; Marta K Kasprowicz; Marta E Kasprzyk; Jan Wrzesinski
Journal:  Int J Mol Sci       Date:  2020-02-04       Impact factor: 5.923

Review 3.  Nanopore sequencing and its application to the study of microbial communities.

Authors:  Laura Ciuffreda; Héctor Rodríguez-Pérez; Carlos Flores
Journal:  Comput Struct Biotechnol J       Date:  2021-03-07       Impact factor: 7.271

4.  Accelerating Detection of Variants During COVID-19 Surges by Diverse Technological and Public Health Partnerships: A Case Study From Indonesia.

Authors:  Ariel Pradipta; Meutia Ayuputeri Kumaheri; Lilik Duwi Wahyudi; Anindya Pradipta Susanto; Harryyanto Ishaq Agasi; Anuraj H Shankar; Pratiwi Sudarmono
Journal:  Front Genet       Date:  2022-01-28       Impact factor: 4.599

Review 5.  VHH Structural Modelling Approaches: A Critical Review.

Authors:  Poonam Vishwakarma; Akhila Melarkode Vattekatte; Nicolas Shinada; Julien Diharce; Carla Martins; Frédéric Cadet; Fabrice Gardebien; Catherine Etchebest; Aravindan Arun Nadaradjane; Alexandre G de Brevern
Journal:  Int J Mol Sci       Date:  2022-03-28       Impact factor: 5.923

6.  PBSIM2: a simulator for long-read sequencers with a novel generative model of quality scores.

Authors:  Yukiteru Ono; Kiyoshi Asai; Michiaki Hamada
Journal:  Bioinformatics       Date:  2021-05-05       Impact factor: 6.937

Review 7.  Long-Reads-Based Metagenomics in Clinical Diagnosis With a Special Focus on Fungal Infections.

Authors:  Minh Thuy Vi Hoang; Laszlo Irinyi; Yiheng Hu; Benjamin Schwessinger; Wieland Meyer
Journal:  Front Microbiol       Date:  2022-01-06       Impact factor: 5.640
  7 in total

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