Literature DB >> 31443046

ILDMSF: Inferring Associations Between Long Non-Coding RNA and Disease Based on Multi-Similarity Fusion.

Qingfeng Chen, Dehuan Lai, Wei Lan, Ximin Wu, Baoshan Chen, Jin Liu, Yi-Ping Phoebe Chen, Jianxin Wang.   

Abstract

The dysregulation and mutation of long non-coding RNAs (lncRNAs) have been proved to result in a variety of human diseases. Identifying potential disease-related lncRNAs may benefit disease diagnosis, treatment and prognosis. A number of methods have been proposed to predict the potential lncRNA-disease relationships. However, most of them may give rise to incorrect results due to relying on single similarity measure. This article proposes a novel framework (ILDMSF) by fusing the lncRNA similarities and disease similarities, which are measured by lncRNA-related gene and known lncRNA-disease interaction and disease semantic interaction, and known lncRNA-disease interaction, respectively. Further, the support vector machine is employed to identify the potential lncRNA-disease associations based on the integrated similarity. The leave-one-out cross validation is performed to compare ILDMSF with other state of the art methods. The experimental results demonstrate our method is prospective in exploring potential correlations between lncRNA and disease.

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Year:  2021        PMID: 31443046     DOI: 10.1109/TCBB.2019.2936476

Source DB:  PubMed          Journal:  IEEE/ACM Trans Comput Biol Bioinform        ISSN: 1545-5963            Impact factor:   3.710


  12 in total

1.  HBRWRLDA: predicting potential lncRNA-disease associations based on hypergraph bi-random walk with restart.

Authors:  Guobo Xie; Yinting Zhu; Zhiyi Lin; Yuping Sun; Guosheng Gu; Jianming Li; Weiming Wang
Journal:  Mol Genet Genomics       Date:  2022-06-25       Impact factor: 2.980

2.  An Adaptive Sparse Subspace Clustering for Cell Type Identification.

Authors:  Ruiqing Zheng; Zhenlan Liang; Xiang Chen; Yu Tian; Chen Cao; Min Li
Journal:  Front Genet       Date:  2020-04-28       Impact factor: 4.599

3.  Computational Methods and Applications for Identifying Disease-Associated lncRNAs as Potential Biomarkers and Therapeutic Targets.

Authors:  Congcong Yan; Zicheng Zhang; Siqi Bao; Ping Hou; Meng Zhou; Chongyong Xu; Jie Sun
Journal:  Mol Ther Nucleic Acids       Date:  2020-05-21       Impact factor: 8.886

4.  GBDTL2E: Predicting lncRNA-EF Associations Using Diffusion and HeteSim Features Based on a Heterogeneous Network.

Authors:  Jiaqi Wang; Zhufang Kuang; Zhihao Ma; Genwei Han
Journal:  Front Genet       Date:  2020-04-15       Impact factor: 4.599

5.  Schizophrenia Identification Using Multi-View Graph Measures of Functional Brain Networks.

Authors:  Yizhen Xiang; Jianxin Wang; Guanxin Tan; Fang-Xiang Wu; Jin Liu
Journal:  Front Bioeng Biotechnol       Date:  2020-01-15

6.  CircR2Cancer: a manually curated database of associations between circRNAs and cancers.

Authors:  Wei Lan; Mingrui Zhu; Qingfeng Chen; Baoshan Chen; Jin Liu; Min Li; Yi-Ping Phoebe Chen
Journal:  Database (Oxford)       Date:  2020-01-01       Impact factor: 3.451

7.  GADTI: Graph Autoencoder Approach for DTI Prediction From Heterogeneous Network.

Authors:  Zhixian Liu; Qingfeng Chen; Wei Lan; Haiming Pan; Xinkun Hao; Shirui Pan
Journal:  Front Genet       Date:  2021-04-09       Impact factor: 4.599

8.  Multiview Consensus Graph Learning for lncRNA-Disease Association Prediction.

Authors:  Haojiang Tan; Quanmeng Sun; Guanghui Li; Qiu Xiao; Pingjian Ding; Jiawei Luo; Cheng Liang
Journal:  Front Genet       Date:  2020-02-21       Impact factor: 4.599

9.  PESM: predicting the essentiality of miRNAs based on gradient boosting machines and sequences.

Authors:  Cheng Yan; Fang-Xiang Wu; Jianxin Wang; Guihua Duan
Journal:  BMC Bioinformatics       Date:  2020-03-18       Impact factor: 3.169

10.  Identification of early mild cognitive impairment using multi-modal data and graph convolutional networks.

Authors:  Jin Liu; Guanxin Tan; Wei Lan; Jianxin Wang
Journal:  BMC Bioinformatics       Date:  2020-11-18       Impact factor: 3.169

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