Literature DB >> 31440460

Speeding up the drug discovery process: structural similarity searches using molecular surfaces.

Dimitrios Vlachakis1, Georgia Tsiliki1, Dimosthenis Tsagkrasoulis1, Carla Sofia Carvalho1, Vasileios Megalooikonomou1, Sofia Kossida1.   

Abstract

Entities:  

Year:  2012        PMID： 31440460      PMCID： PMC6705604          DOI： 10.14806/ej.18.1.501

Source DB:  PubMed          Journal:  EMBnet J        ISSN： 2226-6089


× No keyword cloud information.
  13 in total

1.  Identification of protein biochemical functions by similarity search using the molecular surface database eF-site.

Authors:  Kengo Kinoshita; Haruki Nakamura
Journal:  Protein Sci       Date:  2003-08       Impact factor: 6.725

2.  PESDserv: a server for high-throughput comparison of protein binding site surfaces.

Authors:  Sourav Das; Michael P Krein; Curt M Breneman
Journal:  Bioinformatics       Date:  2010-06-10       Impact factor: 6.937

3.  Comparison of structure-based and threading-based approaches to protein functional annotation.

Authors:  Michal Brylinski; Jeffrey Skolnick
Journal:  Proteins       Date:  2010-01

4.  Fast screening of protein surfaces using geometric invariant fingerprints.

Authors:  Shuangye Yin; Elizabeth A Proctor; Alexey A Lugovskoy; Nikolay V Dokholyan
Journal:  Proc Natl Acad Sci U S A       Date:  2009-09-17       Impact factor: 11.205

5.  The MIPS mammalian protein-protein interaction database.

Authors:  Philipp Pagel; Stefan Kovac; Matthias Oesterheld; Barbara Brauner; Irmtraud Dunger-Kaltenbach; Goar Frishman; Corinna Montrone; Pekka Mark; Volker Stümpflen; Hans-Werner Mewes; Andreas Ruepp; Dmitrij Frishman
Journal:  Bioinformatics       Date:  2004-11-05       Impact factor: 6.937

6.  Identification of DNA-binding proteins using structural, electrostatic and evolutionary features.

Authors:  Guy Nimrod; András Szilágyi; Christina Leslie; Nir Ben-Tal
Journal:  J Mol Biol       Date:  2009-02-20       Impact factor: 5.469

7.  VASP: a volumetric analysis of surface properties yields insights into protein-ligand binding specificity.

Authors:  Brian Y Chen; Barry Honig
Journal:  PLoS Comput Biol       Date:  2010-08-12       Impact factor: 4.475

8.  Rapid comparison of properties on protein surface.

Authors:  Lee Sael; David La; Bin Li; Raif Rustamov; Daisuke Kihara
Journal:  Proteins       Date:  2008-10

9.  The RCSB Protein Data Bank: redesigned web site and web services.

Authors:  Peter W Rose; Bojan Beran; Chunxiao Bi; Wolfgang F Bluhm; Dimitris Dimitropoulos; David S Goodsell; Andreas Prlic; Martha Quesada; Gregory B Quinn; John D Westbrook; Jasmine Young; Benjamin Yukich; Christine Zardecki; Helen M Berman; Philip E Bourne
Journal:  Nucleic Acids Res       Date:  2010-10-29       Impact factor: 16.971

10.  Protein functional surfaces: global shape matching and local spatial alignments of ligand binding sites.

Authors:  T Andrew Binkowski; Andrzej Joachimiak
Journal:  BMC Struct Biol       Date:  2008-10-27
View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.