Literature DB >> 31439980

Spatial Bayesian modeling of GLCM with application to malignant lesion characterization.

Xiao Li1,2, Michele Guindani3, Chaan S Ng4, Brian P Hobbs5.   

Abstract

The emerging field of cancer radiomics endeavors to characterize intrinsic patterns of tumor phenotypes and surrogate markers of response by transforming medical images into objects that yield quantifiable summary statistics to which regression and machine learning algorithms may be applied for statistical interrogation. Recent literature has identified clinicopathological association based on textural features deriving from gray-level co-occurrence matrices (GLCM) which facilitate evaluations of gray-level spatial dependence within a delineated region of interest. GLCM-derived features, however, tend to contribute highly redundant information. Moreover, when reporting selected feature sets, investigators often fail to adjust for multiplicities and commonly fail to convey the predictive power of their findings. This article presents a Bayesian probabilistic modeling framework for the GLCM as a multivariate object as well as describes its application within a cancer detection context based on computed tomography. The methodology, which circumvents processing steps and avoids evaluations of reductive and highly correlated feature sets, uses latent Gaussian Markov random field structure to characterize spatial dependencies among GLCM cells and facilitates classification via predictive probability. Correctly predicting the underlying pathology of 81% of the adrenal lesions in our case study, the proposed method outperformed current practices which achieved a maximum accuracy of only 59%. Simulations and theory are presented to further elucidate this comparison as well as ascertain the utility of applying multivariate Gaussian spatial processes to GLCM objects.

Entities:  

Keywords:  Bayesian prediction; Markov random field; cancer detection; gray-level co-occurrence matrix; radiomics; texture analysis

Year:  2018        PMID: 31439980      PMCID: PMC6706247          DOI: 10.1080/02664763.2018.1473348

Source DB:  PubMed          Journal:  J Appl Stat        ISSN: 0266-4763            Impact factor:   1.404


  21 in total

1.  Textural analysis of contrast-enhanced MR images of the breast.

Authors:  Peter Gibbs; Lindsay W Turnbull
Journal:  Magn Reson Med       Date:  2003-07       Impact factor: 4.668

Review 2.  Texture analysis: a review of neurologic MR imaging applications.

Authors:  A Kassner; R E Thornhill
Journal:  AJNR Am J Neuroradiol       Date:  2010-04-15       Impact factor: 3.825

3.  Advanced statistical matrices for texture characterization: application to cell classification.

Authors:  Guillaume Thibault; Jesús Angulo; Fernand Meyer
Journal:  IEEE Trans Biomed Eng       Date:  2013-10-04       Impact factor: 4.538

4.  Texture analysis of multiple sclerosis: a comparative study.

Authors:  Jing Zhang; Longzheng Tong; Lei Wang; Ning Li
Journal:  Magn Reson Imaging       Date:  2008-05-29       Impact factor: 2.546

5.  Texture analysis of human liver.

Authors:  Daniel Jirák; Monika Dezortová; Pavel Taimr; Milan Hájek
Journal:  J Magn Reson Imaging       Date:  2002-01       Impact factor: 4.813

Review 6.  Radiomics: extracting more information from medical images using advanced feature analysis.

Authors:  Philippe Lambin; Emmanuel Rios-Velazquez; Ralph Leijenaar; Sara Carvalho; Ruud G P M van Stiphout; Patrick Granton; Catharina M L Zegers; Robert Gillies; Ronald Boellard; André Dekker; Hugo J W L Aerts
Journal:  Eur J Cancer       Date:  2012-01-16       Impact factor: 9.162

7.  A computer-aided diagnostic system to characterize CT focal liver lesions: design and optimization of a neural network classifier.

Authors:  Miltiades Gletsos; Stavroula G Mougiakakou; George K Matsopoulos; Konstantina S Nikita; Alexandra S Nikita; Dimitrios Kelekis
Journal:  IEEE Trans Inf Technol Biomed       Date:  2003-09

Review 8.  Diagnostic and prognostic features in adrenocortical carcinoma: a single institution case series and review of the literature.

Authors:  Kerollos N Wanis; Rani Kanthan
Journal:  World J Surg Oncol       Date:  2015-03-24       Impact factor: 2.754

9.  Collagen morphology and texture analysis: from statistics to classification.

Authors:  Leila B Mostaço-Guidolin; Alex C-T Ko; Fei Wang; Bo Xiang; Mark Hewko; Ganghong Tian; Arkady Major; Masashi Shiomi; Michael G Sowa
Journal:  Sci Rep       Date:  2013       Impact factor: 4.379

10.  Decoding tumour phenotype by noninvasive imaging using a quantitative radiomics approach.

Authors:  Hugo J W L Aerts; Emmanuel Rios Velazquez; Ralph T H Leijenaar; Chintan Parmar; Patrick Grossmann; Sara Carvalho; Sara Cavalho; Johan Bussink; René Monshouwer; Benjamin Haibe-Kains; Derek Rietveld; Frank Hoebers; Michelle M Rietbergen; C René Leemans; Andre Dekker; John Quackenbush; Robert J Gillies; Philippe Lambin
Journal:  Nat Commun       Date:  2014-06-03       Impact factor: 14.919

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  4 in total

1.  Grade Prediction of Bleeding Volume in Cesarean Section of Patients With Pernicious Placenta Previa Based on Deep Learning.

Authors:  Jun Liu; Tao Wu; Yun Peng; Rongguang Luo
Journal:  Front Bioeng Biotechnol       Date:  2020-04-30

2.  A Bayesian 2D functional linear model for gray-level co-occurrence matrices in texture analysis of lower grade gliomas.

Authors:  Thierry Chekouo; Shariq Mohammed; Arvind Rao
Journal:  Neuroimage Clin       Date:  2020-09-18       Impact factor: 4.881

3.  Diagnostic performance of radiomics in adrenal masses: A systematic review and meta-analysis.

Authors:  Hao Zhang; Hanqi Lei; Jun Pang
Journal:  Front Oncol       Date:  2022-09-02       Impact factor: 5.738

Review 4.  Radiomics in Cross-Sectional Adrenal Imaging: A Systematic Review and Quality Assessment Study.

Authors:  Arnaldo Stanzione; Roberta Galatola; Renato Cuocolo; Valeria Romeo; Francesco Verde; Pier Paolo Mainenti; Arturo Brunetti; Simone Maurea
Journal:  Diagnostics (Basel)       Date:  2022-02-24
  4 in total

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