Literature DB >> 31439897

Strategies among phytoplankton in response to alleviation of nutrient stress in a subtropical gyre.

Robert H Lampe1,2, Seaver Wang3, Nicolas Cassar3,4, Adrian Marchetti5.   

Abstract

Despite generally low primary productivity and diatom abundances in oligotrophic subtropical gyres, the North Atlantic Subtropical Gyre (NASG) exhibits significant diatom-driven carbon export on an annual basis. Subsurface pulses of nutrients likely fuel brief episodes of diatom growth, but the exact mechanisms utilized by diatoms in response to these nutrient injections remain understudied within near-natural settings. Here we simulated delivery of subsurface nutrients and compare the response among eukaryotic phytoplankton using a combination of physiological techniques and metatranscriptomics. We show that eukaryotic phytoplankton groups exhibit differing levels of transcriptional responsiveness and expression of orthologous genes in response to release from nutrient limitation. In particular, strategies for use of newly delivered nutrients are distinct among phytoplankton groups. Diatoms channel new nitrate to growth-related strategies while physiological measurements and gene expression patterns of other groups suggest alternative strategies. The gene expression patterns displayed here provide insights into the cellular mechanisms that underlie diatom subsistence during chronic nitrogen-depleted conditions and growth upon nutrient delivery that can enhance carbon export from the surface ocean.

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Year:  2019        PMID: 31439897      PMCID: PMC6863841          DOI: 10.1038/s41396-019-0489-6

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  40 in total

1.  Phytoplankton distribution patterns in the northwestern Sargasso Sea revealed by small subunit rRNA genes from plastids.

Authors:  Alexander H Treusch; Elif Demir-Hilton; Kevin L Vergin; Alexandra Z Worden; Craig A Carlson; Michael G Donatz; Robert M Burton; Stephen J Giovannoni
Journal:  ISME J       Date:  2011-09-29       Impact factor: 10.302

2.  Functional group-specific traits drive phytoplankton dynamics in the oligotrophic ocean.

Authors:  Harriet Alexander; Mónica Rouco; Sheean T Haley; Samuel T Wilson; David M Karl; Sonya T Dyhrman
Journal:  Proc Natl Acad Sci U S A       Date:  2015-10-12       Impact factor: 11.205

3.  The response of diatom central carbon metabolism to nitrogen starvation is different from that of green algae and higher plants.

Authors:  Nicola Louise Hockin; Thomas Mock; Francis Mulholland; Stanislav Kopriva; Gill Malin
Journal:  Plant Physiol       Date:  2011-11-07       Impact factor: 8.340

4.  Divergent gene expression among phytoplankton taxa in response to upwelling.

Authors:  Robert H Lampe; Natalie R Cohen; Kelsey A Ellis; Kenneth W Bruland; Maria T Maldonado; Tawnya D Peterson; Claire P Till; Mark A Brzezinski; Sibel Bargu; Kimberlee Thamatrakoln; Fedor I Kuzminov; Benjamin S Twining; Adrian Marchetti
Journal:  Environ Microbiol       Date:  2018-09-10       Impact factor: 5.491

5.  Marine biogenic source of atmospheric organic nitrogen in the subtropical North Atlantic.

Authors:  Katye E Altieri; Sarah E Fawcett; Andrew J Peters; Daniel M Sigman; Meredith G Hastings
Journal:  Proc Natl Acad Sci U S A       Date:  2016-01-06       Impact factor: 11.205

6.  Profiling of the Early Nitrogen Stress Response in the Diatom Phaeodactylum tricornutum Reveals a Novel Family of RING-Domain Transcription Factors.

Authors:  Michiel Matthijs; Michele Fabris; Stefan Broos; Wim Vyverman; Alain Goossens
Journal:  Plant Physiol       Date:  2015-11-18       Impact factor: 8.340

7.  Whole-cell response to nitrogen deprivation in the diatom Phaeodactylum tricornutum.

Authors:  Leila Alipanah; Jens Rohloff; Per Winge; Atle M Bones; Tore Brembu
Journal:  J Exp Bot       Date:  2015-07-10       Impact factor: 6.992

8.  CD-HIT: accelerated for clustering the next-generation sequencing data.

Authors:  Limin Fu; Beifang Niu; Zhengwei Zhu; Sitao Wu; Weizhong Li
Journal:  Bioinformatics       Date:  2012-10-11       Impact factor: 6.937

9.  Ubiquitous healthy diatoms in the deep sea confirm deep carbon injection by the biological pump.

Authors:  S Agusti; J I González-Gordillo; D Vaqué; M Estrada; M I Cerezo; G Salazar; J M Gasol; C M Duarte
Journal:  Nat Commun       Date:  2015-07-09       Impact factor: 14.919

10.  Trimmomatic: a flexible trimmer for Illumina sequence data.

Authors:  Anthony M Bolger; Marc Lohse; Bjoern Usadel
Journal:  Bioinformatics       Date:  2014-04-01       Impact factor: 6.937

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