Literature DB >> 31437968

Rich Text Formatted EHR Narratives: A Hidden and Ignored Trove.

Zexian Zeng1, Yuan Zhao1, Mengxin Sun2, Andy H Vo3, Justin Starren1, Yuan Luo1.   

Abstract

This study presents an approach for mining structured information from clinical narratives in Electronic Health Records (EHRs) by using Rich Text Formatted (RTF) records. RTF is adopted by many medical information management systems. There is rich structural information in these files which can be extracted and interpreted, yet such information is largely ignored. We investigate multiple types of EHR narratives in the Enterprise Data Warehouse from a multisite large healthcare chain consisting of both, an academic medical center and community hospitals. We focus on the RTF constructs related to tables and sections that are not available in plain text EHR narratives. We show how to parse these RTF constructs, analyze their prevalence and characteristics in the context of multiple types of EHR narratives. Our case study demonstrates the additional utility of the features derived from RTF constructs over plain text oriented NLP.

Entities:  

Keywords:  Electronic Health Records; Information Management; Natural Language Processing

Mesh:

Year:  2019        PMID: 31437968      PMCID: PMC8060951          DOI: 10.3233/SHTI190266

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  20 in total

1.  Effective mapping of biomedical text to the UMLS Metathesaurus: the MetaMap program.

Authors:  A R Aronson
Journal:  Proc AMIA Symp       Date:  2001

2.  Automated encoding of clinical documents based on natural language processing.

Authors:  Carol Friedman; Lyudmila Shagina; Yves Lussier; George Hripcsak
Journal:  J Am Med Inform Assoc       Date:  2004-06-07       Impact factor: 4.497

3.  Mayo clinical Text Analysis and Knowledge Extraction System (cTAKES): architecture, component evaluation and applications.

Authors:  Guergana K Savova; James J Masanz; Philip V Ogren; Jiaping Zheng; Sunghwan Sohn; Karin C Kipper-Schuler; Christopher G Chute
Journal:  J Am Med Inform Assoc       Date:  2010 Sep-Oct       Impact factor: 4.497

4.  Electronic health records based phenotyping in next-generation clinical trials: a perspective from the NIH Health Care Systems Collaboratory.

Authors:  Rachel L Richesson; W Ed Hammond; Meredith Nahm; Douglas Wixted; Gregory E Simon; Jennifer G Robinson; Alan E Bauck; Denise Cifelli; Michelle M Smerek; John Dickerson; Reesa L Laws; Rosemary A Madigan; Shelley A Rusincovitch; Cynthia Kluchar; Robert M Califf
Journal:  J Am Med Inform Assoc       Date:  2013-08-16       Impact factor: 4.497

Review 5.  Natural Language Processing for EHR-Based Pharmacovigilance: A Structured Review.

Authors:  Yuan Luo; William K Thompson; Timothy M Herr; Zexian Zeng; Mark A Berendsen; Siddhartha R Jonnalagadda; Matthew B Carson; Justin Starren
Journal:  Drug Saf       Date:  2017-11       Impact factor: 5.606

6.  Automatic lymphoma classification with sentence subgraph mining from pathology reports.

Authors:  Yuan Luo; Aliyah R Sohani; Ephraim P Hochberg; Peter Szolovits
Journal:  J Am Med Inform Assoc       Date:  2014-01-15       Impact factor: 4.497

Review 7.  Natural Language Processing for EHR-Based Computational Phenotyping.

Authors:  Zexian Zeng; Yu Deng; Xiaoyu Li; Tristan Naumann; Yuan Luo
Journal:  IEEE/ACM Trans Comput Biol Bioinform       Date:  2018-06-25       Impact factor: 3.710

Review 8.  A review of approaches to identifying patient phenotype cohorts using electronic health records.

Authors:  Chaitanya Shivade; Preethi Raghavan; Eric Fosler-Lussier; Peter J Embi; Noemie Elhadad; Stephen B Johnson; Albert M Lai
Journal:  J Am Med Inform Assoc       Date:  2013-11-07       Impact factor: 4.497

9.  Next-generation phenotyping of electronic health records.

Authors:  George Hripcsak; David J Albers
Journal:  J Am Med Inform Assoc       Date:  2012-09-06       Impact factor: 4.497

10.  Using natural language processing and machine learning to identify breast cancer local recurrence.

Authors:  Zexian Zeng; Sasa Espino; Ankita Roy; Xiaoyu Li; Seema A Khan; Susan E Clare; Xia Jiang; Richard Neapolitan; Yuan Luo
Journal:  BMC Bioinformatics       Date:  2018-12-28       Impact factor: 3.169

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