Literature DB >> 31437895

Aggregation and Visualization of Laboratory Data by Using Ontological Tools Based on LOINC and SNOMED CT.

Cora Drenkhahn1, Petra Duhm-Harbeck2, Josef Ingenerf1,2.   

Abstract

With the proliferation of digital communication in healthcare, the reuse of laboratory test data entails valuable insights into clinical and scientific issues, basically enabled by semantic standardization using the LOINC coding system. In order to extend the currently limited potential for analysis, which is mainly caused by structural peculiarities of LOINC, an algorithmic transformation of relevant content into an OWL ontology was performed, which includes LOINC Terms, Parts and Hierarchies. For extending analysis capabilities, the comprehensive SNOMED CT ontology is added by transferring its contents and the recently published LOINC-related mapping data into OWL ontologies. These formalizations offer rich, computer-processable content and allow to infer additional structures and relationships, especially when used together. Consequently, various reutilizations are facilitated; an application demonstrating the dynamic visualization of fractional hierarchy structures for user-supplied laboratory data was already implemented. By providing element-wise aggregation via superclasses, an adaptable, graph representation is obtained for studying categorizations.

Keywords:  Biomedical Ontologies; LOINC; SNOMED CT

Mesh:

Year:  2019        PMID: 31437895     DOI: 10.3233/SHTI190193

Source DB:  PubMed          Journal:  Stud Health Technol Inform        ISSN: 0926-9630


  3 in total

1.  Harmonization and standardization of data for a pan-European cohort on SARS- CoV-2 pandemic.

Authors:  Eugenia Rinaldi; Caroline Stellmach; Naveen Moses Raj Rajkumar; Natascia Caroccia; Chiara Dellacasa; Maddalena Giannella; Mariana Guedes; Massimo Mirandola; Gabriella Scipione; Evelina Tacconelli; Sylvia Thun
Journal:  NPJ Digit Med       Date:  2022-06-14

2.  Harmonizing units and values of quantitative data elements in a very large nationally pooled electronic health record (EHR) dataset.

Authors:  Katie R Bradwell; Jacob T Wooldridge; Benjamin Amor; Tellen D Bennett; Adit Anand; Carolyn Bremer; Yun Jae Yoo; Zhenglong Qian; Steven G Johnson; Emily R Pfaff; Andrew T Girvin; Amin Manna; Emily A Niehaus; Stephanie S Hong; Xiaohan Tanner Zhang; Richard L Zhu; Mark Bissell; Nabeel Qureshi; Joel Saltz; Melissa A Haendel; Christopher G Chute; Harold P Lehmann; Richard A Moffitt
Journal:  J Am Med Inform Assoc       Date:  2022-06-14       Impact factor: 7.942

3.  Aligning an interface terminology to the Logical Observation Identifiers Names and Codes (LOINC®).

Authors:  Jean Noël Nikiema; Romain Griffier; Vianney Jouhet; Fleur Mougin
Journal:  JAMIA Open       Date:  2021-06-12
  3 in total

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