Literature DB >> 31436901

A recurrent 8 bp frameshifting indel in FOXF1 defines a novel mutation hotspot associated with alveolar capillary dysplasia with misalignment of pulmonary veins.

Justyna A Karolak1,2, Albino Bacolla3,4, Qian Liu1, Patrick E Lantz5, John Petty6, Pamela Trapane7, Karin Panzer8, Balagangadhar R Totapally9, Zhiyv Niu1, Rui Xiao10, Nina G Xie11, Lucia R Wu11, Przemyslaw Szafranski1, David Y Zhang11, Paweł Stankiewicz1.   

Abstract

Alveolar capillary dysplasia with misalignment of pulmonary veins (ACDMPV) is a rare lethal lung developmental disease. Affected infants manifest with severe respiratory distress and refractory pulmonary hypertension and uniformly die in the first month of life. Heterozygous point mutations or copy-number variant deletions involving FOXF1 and/or its upstream lung-specific enhancer on 16q24.1 have been identified in the vast majority of ACDMPV patients. We have previously described two unrelated families with a de novo pathogenic frameshift variant c.691_698del (p.Ala231Argfs*61) in the exon 1 of FOXF1. Here, we present a third unrelated ACDMPV family with the same de novo variant and propose that a direct tandem repeat of eight consecutive nucleotides GCGGCGGC within the ~4 kb CpG island in FOXF1 exon 1 is a novel mutation hotspot causative for ACDMPV.
© 2019 Wiley Periodicals, Inc.

Entities:  

Keywords:  zzm321990FOXF1 haploinsufficiency; CpG island; recurrent mutation; tandem repeats

Mesh:

Substances:

Year:  2019        PMID: 31436901      PMCID: PMC6849398          DOI: 10.1002/ajmg.a.61338

Source DB:  PubMed          Journal:  Am J Med Genet A        ISSN: 1552-4825            Impact factor:   2.802


  25 in total

Review 1.  Alveolar capillary dysplasia.

Authors:  Naomi B Bishop; Pawel Stankiewicz; Robin H Steinhorn
Journal:  Am J Respir Crit Care Med       Date:  2011-03-11       Impact factor: 21.405

2.  Alveolar capillary dysplasia with misalignment of the pulmonary veins due to novel insertion mutation of FOXF1.

Authors:  Nobuhiko Nagano; Kayo Yoshikawa; Shigeharu Hosono; Shori Takahashi; Tomohiro Nakayama
Journal:  Pediatr Int       Date:  2016-12       Impact factor: 1.524

3.  Microdeletions and microinsertions causing human genetic disease: common mechanisms of mutagenesis and the role of local DNA sequence complexity.

Authors:  Edward V Ball; Peter D Stenson; Shaun S Abeysinghe; Michael Krawczak; David N Cooper; Nadia A Chuzhanova
Journal:  Hum Mutat       Date:  2005-09       Impact factor: 4.878

4.  A novel missense mutation in the transcription factor FOXF1 cosegregating with infantile hypertrophic pyloric stenosis in the extended pedigree linked to IHPS5 on chromosome 16q24.

Authors:  Kate V Everett; Paris Ataliotis; Barry A Chioza; Charles Shaw-Smith; Eddie M K Chung
Journal:  Pediatr Res       Date:  2016-11-17       Impact factor: 3.756

5.  A familial case of alveolar capillary dysplasia with misalignment of pulmonary veins supports paternal imprinting of FOXF1 in human.

Authors:  Partha Sen; Romana Gerychova; Petr Janku; Marta Jezova; Iveta Valaskova; Colby Navarro; Iris Silva; Claire Langston; Stephen Welty; John Belmont; Pawel Stankiewicz
Journal:  Eur J Hum Genet       Date:  2012-09-19       Impact factor: 4.246

6.  Genetic basis for childhood interstitial lung disease among Japanese infants and children.

Authors:  Itaru Hayasaka; Kazutoshi Cho; Takuma Akimoto; Masahiko Ikeda; Yutaka Uzuki; Masafumi Yamada; Koh Nakata; Itsuko Furuta; Tadashi Ariga; Hisanori Minakami
Journal:  Pediatr Res       Date:  2017-11-01       Impact factor: 3.756

7.  Small noncoding differentially methylated copy-number variants, including lncRNA genes, cause a lethal lung developmental disorder.

Authors:  Przemyslaw Szafranski; Avinash V Dharmadhikari; Erwin Brosens; Priyatansh Gurha; Katarzyna E Kolodziejska; Ou Zhishuo; Piotr Dittwald; Tadeusz Majewski; K Naga Mohan; Bo Chen; Richard E Person; Dick Tibboel; Annelies de Klein; Jason Pinner; Maya Chopra; Girvan Malcolm; Gregory Peters; Susan Arbuckle; Sixto F Guiang; Virginia A Hustead; Jose Jessurun; Russel Hirsch; David P Witte; Isabelle Maystadt; Neil Sebire; Richard Fisher; Claire Langston; Partha Sen; Paweł Stankiewicz
Journal:  Genome Res       Date:  2012-10-03       Impact factor: 9.043

8.  Novel FOXF1 mutations in sporadic and familial cases of alveolar capillary dysplasia with misaligned pulmonary veins imply a role for its DNA binding domain.

Authors:  Partha Sen; Yaping Yang; Colby Navarro; Iris Silva; Przemyslaw Szafranski; Katarzyna E Kolodziejska; Avinash V Dharmadhikari; Hasnaa Mostafa; Harry Kozakewich; Debra Kearney; John B Cahill; Merrissa Whitt; Masha Bilic; Linda Margraf; Adrian Charles; Jack Goldblatt; Kathleen Gibson; Patrick E Lantz; A Julian Garvin; John Petty; Zeina Kiblawi; Craig Zuppan; Allyn McConkie-Rosell; Marie T McDonald; Stacey L Peterson-Carmichael; Jane T Gaede; Binoy Shivanna; Deborah Schady; Philippe S Friedlich; Stephen R Hays; Irene Valenzuela Palafoll; Ulrike Siebers-Renelt; Axel Bohring; Laura S Finn; Joseph R Siebert; Csaba Galambos; Lananh Nguyen; Melissa Riley; Nicolas Chassaing; Adeline Vigouroux; Gustavo Rocha; Susana Fernandes; Jane Brumbaugh; Kari Roberts; Luk Ho-Ming; Ivan F M Lo; Stephen Lam; Romana Gerychova; Marta Jezova; Iveta Valaskova; Florence Fellmann; Katayoun Afshar; Eric Giannoni; Vincent Muhlethaler; Jinlong Liang; Jacques S Beckmann; Janet Lioy; Hitesh Deshmukh; Lakshmi Srinivasan; Daniel T Swarr; Melissa Sloman; Charles Shaw-Smith; Rosa Laura van Loon; Cecilia Hagman; Yves Sznajer; Catherine Barrea; Christine Galant; Thierry Detaille; Jennifer A Wambach; F Sessions Cole; Aaron Hamvas; Lawrence S Prince; Karin E M Diderich; Alice S Brooks; Robert M Verdijk; Hari Ravindranathan; Ella Sugo; David Mowat; Michael L Baker; Claire Langston; Stephen Welty; Pawel Stankiewicz
Journal:  Hum Mutat       Date:  2013-04-12       Impact factor: 4.878

9.  Pathogenetics of alveolar capillary dysplasia with misalignment of pulmonary veins.

Authors:  Przemyslaw Szafranski; Tomasz Gambin; Avinash V Dharmadhikari; Kadir Caner Akdemir; Shalini N Jhangiani; Jennifer Schuette; Nihal Godiwala; Svetlana A Yatsenko; Jessica Sebastian; Suneeta Madan-Khetarpal; Urvashi Surti; Rosanna G Abellar; David A Bateman; Ashley L Wilson; Melinda H Markham; Jill Slamon; Fernando Santos-Simarro; María Palomares; Julián Nevado; Pablo Lapunzina; Brian Hon-Yin Chung; Wai-Lap Wong; Yoyo Wing Yiu Chu; Gary Tsz Kin Mok; Eitan Kerem; Joel Reiter; Namasivayam Ambalavanan; Scott A Anderson; David R Kelly; Joseph Shieh; Taryn C Rosenthal; Kristin Scheible; Laurie Steiner; M Anwar Iqbal; Margaret L McKinnon; Sara Jane Hamilton; Kamilla Schlade-Bartusiak; Dawn English; Glenda Hendson; Elizabeth R Roeder; Thomas S DeNapoli; Rebecca Okashah Littlejohn; Daynna J Wolff; Carol L Wagner; Alison Yeung; David Francis; Elizabeth K Fiorino; Morris Edelman; Joyce Fox; Denise A Hayes; Sandra Janssens; Elfride De Baere; Björn Menten; Anne Loccufier; Lieve Vanwalleghem; Philippe Moerman; Yves Sznajer; Amy S Lay; Jennifer L Kussmann; Jasneek Chawla; Diane J Payton; Gael E Phillips; Erwin Brosens; Dick Tibboel; Annelies de Klein; Isabelle Maystadt; Richard Fisher; Neil Sebire; Alison Male; Maya Chopra; Jason Pinner; Girvan Malcolm; Gregory Peters; Susan Arbuckle; Melissa Lees; Zoe Mead; Oliver Quarrell; Richard Sayers; Martina Owens; Charles Shaw-Smith; Janet Lioy; Eileen McKay; Nicole de Leeuw; Ilse Feenstra; Liesbeth Spruijt; Frances Elmslie; Timothy Thiruchelvam; Carlos A Bacino; Claire Langston; James R Lupski; Partha Sen; Edwina Popek; Paweł Stankiewicz
Journal:  Hum Genet       Date:  2016-04-12       Impact factor: 4.132

10.  Context of deletions and insertions in human coding sequences.

Authors:  Alexey S Kondrashov; Igor B Rogozin
Journal:  Hum Mutat       Date:  2004-02       Impact factor: 4.878

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