Literature DB >> 31436778

Analysis of genome-wide in cell free DNA methylation: progress and prospect.

Zhiyu Liu1, Zexin Wang, Erteng Jia, Tinglan Ouyang, Min Pan, Jiafeng Lu, Qinyu Ge, Yunfei Bai.   

Abstract

DNA methylation is an important epigenetic marker that affects gene expression. Cell-free DNA methylation detection is a promising approach as abnormal distribution of DNA methylation is one of the hallmarks of many cancers and methylation changes occur early during carcinogenesis. This review summarizes the existing literature and reviews on the detection methods based on next generation sequencing for DNA methylation. The review also discusses the feasibility of detecting cfDNA methylation and the latest progress.

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Year:  2019        PMID： 31436778     DOI： 10.1039/c9an00935c

Source DB:  PubMed          Journal:  Analyst        ISSN： 0003-2654            Impact factor:   4.616


  7 in total

1.  MBD2 Correlates with a Poor Prognosis and Tumor Progression in Renal Cell Carcinoma.

Authors:  Liantao Li; Na Li; Nianli Liu; Fuchun Huo; Junnian Zheng
Journal:  Onco Targets Ther       Date:  2020-10-07       Impact factor: 4.147

2.  Guidelines for pre-analytical conditions for assessing the methylation of circulating cell-free DNA.

Authors:  Mohammad Amin Kerachian; Marjan Azghandi; Sina Mozaffari-Jovin; Alain R Thierry
Journal:  Clin Epigenetics       Date:  2021-10-18       Impact factor: 6.551

Review 3.  Computational challenges in detection of cancer using cell-free DNA methylation.

Authors:  Madhu Sharma; Rohit Kumar Verma; Sunil Kumar; Vibhor Kumar
Journal:  Comput Struct Biotechnol J       Date:  2021-12-07       Impact factor: 7.271

Review 4.  Epigenetic tumor heterogeneity in the era of single-cell profiling with nanopore sequencing.

Authors:  Yohannis Wondwosen Ahmed; Berhan Ababaw Alemu; Sisay Addisu Bekele; Solomon Tebeje Gizaw; Muluken Fekadie Zerihun; Endriyas Kelta Wabalo; Maria Degef Teklemariam; Tsehayneh Kelemu Mihrete; Endris Yibru Hanurry; Tensae Gebru Amogne; Assaye Desalegne Gebrehiwot; Tamirat Nida Berga; Ebsitu Abate Haile; Dessiet Oma Edo; Bizuwork Derebew Alemu
Journal:  Clin Epigenetics       Date:  2022-08-27       Impact factor: 7.259

5.  Identification of hub genes in papillary thyroid carcinoma: robust rank aggregation and weighted gene co-expression network analysis.

Authors:  Yang Liu; Ting-Yu Chen; Zhi-Yan Yang; Wei Fang; Qian Wu; Chao Zhang
Journal:  J Transl Med       Date:  2020-04-16       Impact factor: 5.531

Review 6.  Clinical relevance of blood-based ctDNA analysis: mutation detection and beyond.

Authors:  Laura Keller; Yassine Belloum; Harriet Wikman; Klaus Pantel
Journal:  Br J Cancer       Date:  2020-09-24       Impact factor: 7.640

7.  DNA methylation of tumour necrosis factor (TNF) alpha gene is associated with specific blood fatty acid levels in a gender-specific manner.

Authors:  Bethan Hussey; Richard P Steel; Boakye Gyimah; James C Reynolds; Ian M Taylor; Martin R Lindley; Sarabjit Mastana
Journal:  Mol Genet Genomic Med       Date:  2021-04-05       Impact factor: 2.183
  7 in total

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