Literature DB >> 31435651

Unexpected behavior of DNA polymerase Mu opposite template 8-oxo-7,8-dihydro-2'-guanosine.

Andrea M Kaminski1, Kishore K Chiruvella2, Dale A Ramsden2, Thomas A Kunkel1, Katarzyna Bebenek1, Lars C Pedersen1.   

Abstract

DNA double-strand breaks (DSBs) resulting from reactive oxygen species generated by exposure to UV and ionizing radiation are characterized by clusters of lesions near break sites. Such complex DSBs are repaired slowly, and their persistence can have severe consequences for human health. We have therefore probed DNA break repair containing a template 8-oxo-7,8-dihydro-2'-guanosine (8OG) by Family X Polymerase μ (Pol μ) in steady-state kinetics and cell-based assays. Pol μ tolerates 8OG-containing template DNA substrates, and the filled products can be subsequently ligated by DNA Ligase IV during Nonhomologous end-joining. Furthermore, Pol μ exhibits a strong preference for mutagenic bypass of 8OG by insertion of adenine. Crystal structures reveal that the template 8OG is accommodated in the Pol μ active site with none of the DNA substrate distortions observed for Family X siblings Pols β or λ. Kinetic characterization of template 8OG bypass indicates that Pol μ inserts adenosine nucleotides with weak sugar selectivity and, given the high cellular concentration of ATP, likely performs its role in repair of complex 8OG-containing DSBs using ribonucleotides. Published by Oxford University Press on behalf of Nucleic Acids Research 2019.

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Year:  2019        PMID: 31435651      PMCID: PMC6755092          DOI: 10.1093/nar/gkz680

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN: 0305-1048            Impact factor:   16.971


  56 in total

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Review 5.  The mechanism of double-strand DNA break repair by the nonhomologous DNA end-joining pathway.

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8.  NMR structural studies of the ionizing radiation adduct 7-hydro-8-oxodeoxyguanosine (8-oxo-7H-dG) opposite deoxyadenosine in a DNA duplex. 8-Oxo-7H-dG(syn).dA(anti) alignment at lesion site.

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9.  The fidelity of the ligation step determines how ends are resolved during nonhomologous end joining.

Authors:  Crystal A Waters; Natasha T Strande; John M Pryor; Christina N Strom; Piotr Mieczkowski; Martin D Burkhalter; Sehyun Oh; Bahjat F Qaqish; Dominic T Moore; Eric A Hendrickson; Dale A Ramsden
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10.  ATP insertion opposite 8-oxo-deoxyguanosine by Pol4 mediates error-free tolerance in Schizosaccharomyces pombe.

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  3 in total

Review 1.  DNA polymerase mu: An inflexible scaffold for substrate flexibility.

Authors:  Andrea M Kaminski; Katarzyna Bebenek; Lars C Pedersen; Thomas A Kunkel
Journal:  DNA Repair (Amst)       Date:  2020-09

2.  Mechanism of genome instability mediated by human DNA polymerase mu misincorporation.

Authors:  Miao Guo; Yina Wang; Yuyue Tang; Zijing Chen; Jinfeng Hou; Jingli Dai; Yudong Wang; Liangyan Wang; Hong Xu; Bing Tian; Yuejin Hua; Ye Zhao
Journal:  Nat Commun       Date:  2021-06-18       Impact factor: 14.919

Review 3.  Structural Insights into the Specificity of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Bypass by Family X DNA Polymerases.

Authors:  Andrea M Kaminski; Thomas A Kunkel; Lars C Pedersen; Katarzyna Bebenek
Journal:  Genes (Basel)       Date:  2021-12-22       Impact factor: 4.096

  3 in total

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