Literature DB >> 31433279

Real-time Epidemic Forecasting: Challenges and Opportunities.

Angel N Desai1, Moritz U G Kraemer2, Sangeeta Bhatia3, Anne Cori3, Pierre Nouvellet4, Mark Herringer5, Emily L Cohn6, Malwina Carrion7, John S Brownstein8, Lawrence C Madoff9, Britta Lassmann10.   

Abstract

Infectious disease outbreaks play an important role in global morbidity and mortality. Real-time epidemic forecasting provides an opportunity to predict geographic disease spread as well as case counts to better inform public health interventions when outbreaks occur. Challenges and recent advances in predictive modeling are discussed here. We identified data needs in the areas of epidemic surveillance, mobility, host and environmental susceptibility, pathogen transmissibility, population density, and healthcare capacity. Constraints in standardized case definitions and timely data sharing can limit the precision of predictive models. Resource-limited settings present particular challenges for accurate epidemic forecasting due to the lack of granular data available. Incorporating novel data streams into modeling efforts is an important consideration for the future as technology penetration continues to improve on a global level. Recent advances in machine-learning, increased collaboration between modelers, the use of stochastic semi-mechanistic models, real-time digital disease surveillance data, and open data sharing provide opportunities for refining forecasts for future epidemics. Epidemic forecasting using predictive modeling is an important tool for outbreak preparedness and response efforts. Despite the presence of some data gaps at present, opportunities and advancements in innovative data streams provide additional support for modeling future epidemics.

Entities:  

Keywords:  Disease modeling; Epidemic management/response; Infectious diseases; Surveillance

Mesh:

Year:  2019        PMID: 31433279      PMCID: PMC6708259          DOI: 10.1089/hs.2019.0022

Source DB:  PubMed          Journal:  Health Secur        ISSN: 2326-5094


  24 in total

1.  Commentary: containing the ebola outbreak - the potential and challenge of mobile network data.

Authors:  Amy Wesolowski; Caroline O Buckee; Linus Bengtsson; Erik Wetter; Xin Lu; Andrew J Tatem
Journal:  PLoS Curr       Date:  2014-09-29

2.  Eight challenges in modelling infectious livestock diseases.

Authors:  E Brooks-Pollock; M C M de Jong; M J Keeling; D Klinkenberg; J L N Wood
Journal:  Epidemics       Date:  2014-08-26       Impact factor: 4.396

3.  Eco-social processes influencing infectious disease emergence and spread.

Authors:  Bryony A Jones; Martha Betson; Dirk U Pfeiffer
Journal:  Parasitology       Date:  2016-09-09       Impact factor: 3.234

Review 4.  Effect of climate change on vector-borne disease risk in the UK.

Authors:  Jolyon M Medlock; Steve A Leach
Journal:  Lancet Infect Dis       Date:  2015-03-23       Impact factor: 25.071

Review 5.  Drivers, dynamics, and control of emerging vector-borne zoonotic diseases.

Authors:  A Marm Kilpatrick; Sarah E Randolph
Journal:  Lancet       Date:  2012-12-01       Impact factor: 79.321

6.  Digital disease detection--harnessing the Web for public health surveillance.

Authors:  John S Brownstein; Clark C Freifeld; Lawrence C Madoff
Journal:  N Engl J Med       Date:  2009-05-07       Impact factor: 91.245

Review 7.  Progress and Challenges in Infectious Disease Cartography.

Authors:  Moritz U G Kraemer; Simon I Hay; David M Pigott; David L Smith; G R William Wint; Nick Golding
Journal:  Trends Parasitol       Date:  2015-10-23

8.  The global distribution of the arbovirus vectors Aedes aegypti and Ae. albopictus.

Authors:  Moritz U G Kraemer; Marianne E Sinka; Kirsten A Duda; Adrian Q N Mylne; Freya M Shearer; Christopher M Barker; Chester G Moore; Roberta G Carvalho; Giovanini E Coelho; Wim Van Bortel; Guy Hendrickx; Francis Schaffner; Iqbal R F Elyazar; Hwa-Jen Teng; Oliver J Brady; Jane P Messina; David M Pigott; Thomas W Scott; David L Smith; G R William Wint; Nick Golding; Simon I Hay
Journal:  Elife       Date:  2015-06-30       Impact factor: 8.140

9.  Global distribution and environmental suitability for chikungunya virus, 1952 to 2015.

Authors:  E O Nsoesie; M U Kraemer; S I Hay; J S Brownstein; N Golding; D M Pigott; O J Brady; C L Moyes; M A Johansson; P W Gething; R Velayudhan; K Khan
Journal:  Euro Surveill       Date:  2016-05-19

10.  Mapping global environmental suitability for Zika virus.

Authors:  Jane P Messina; Moritz Ug Kraemer; Oliver J Brady; David M Pigott; Freya M Shearer; Daniel J Weiss; Nick Golding; Corrine W Ruktanonchai; Peter W Gething; Emily Cohn; John S Brownstein; Kamran Khan; Andrew J Tatem; Thomas Jaenisch; Christopher Jl Murray; Fatima Marinho; Thomas W Scott; Simon I Hay
Journal:  Elife       Date:  2016-04-19       Impact factor: 8.140

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  20 in total

1.  Spatio-temporal evolution and trend prediction of the incidence of Class B notifiable infectious diseases in China: a sample of statistical data from 2007 to 2020.

Authors:  Ruo-Nan Wang; Bei Li; Yi-Li Zhang; Yue-Chi Zhang; Bo-Tao Yu; Yan-Ting He
Journal:  BMC Public Health       Date:  2022-06-17       Impact factor: 4.135

2.  Forecasting new diseases in low-data settings using transfer learning.

Authors:  Kirstin Roster; Colm Connaughton; Francisco A Rodrigues
Journal:  Chaos Solitons Fractals       Date:  2022-06-23       Impact factor: 9.922

3.  Nowcasting and forecasting the potential domestic and international spread of the 2019-nCoV outbreak originating in Wuhan, China: a modelling study.

Authors:  Joseph T Wu; Kathy Leung; Gabriel M Leung
Journal:  Lancet       Date:  2020-01-31       Impact factor: 79.321

4.  Asymptotic estimates of SARS-CoV-2 infection counts and their sensitivity to stochastic perturbation.

Authors:  Davide Faranda; Isaac Pérez Castillo; Oliver Hulme; Aglaé Jezequel; Jeroen S W Lamb; Yuzuru Sato; Erica L Thompson
Journal:  Chaos       Date:  2020-05       Impact factor: 3.642

5.  Data-driven modeling for different stages of pandemic response.

Authors:  Aniruddha Adiga; Jiangzhuo Chen; Madhav Marathe; Henning Mortveit; Srinivasan Venkatramanan; Anil Vullikanti
Journal:  ArXiv       Date:  2020-09-21

6.  Models for COVID-19 Pandemic: A Comparative Analysis.

Authors:  Aniruddha Adiga; Devdatt Dubhashi; Bryan Lewis; Madhav Marathe; Srinivasan Venkatramanan; Anil Vullikanti
Journal:  ArXiv       Date:  2020-09-21

7.  Incubation periods impact the spatial predictability of cholera and Ebola outbreaks in Sierra Leone.

Authors:  Rebecca Kahn; Corey M Peak; Juan Fernández-Gracia; Alexandra Hill; Amara Jambai; Louisa Ganda; Marcia C Castro; Caroline O Buckee
Journal:  Proc Natl Acad Sci U S A       Date:  2020-02-13       Impact factor: 11.205

8.  What containment strategy leads us through the pandemic crisis? An empirical analysis of the measures against the COVID-19 pandemic.

Authors:  Daniel Kaimann; Ilka Tanneberg
Journal:  PLoS One       Date:  2021-06-21       Impact factor: 3.240

Review 9.  Mathematical Models for COVID-19 Pandemic: A Comparative Analysis.

Authors:  Aniruddha Adiga; Devdatt Dubhashi; Bryan Lewis; Madhav Marathe; Srinivasan Venkatramanan; Anil Vullikanti
Journal:  J Indian Inst Sci       Date:  2020-10-30

10.  Estimation of reproduction numbers of COVID-19 in typical countries and epidemic trends under different prevention and control scenarios.

Authors:  Chen Xu; Yinqiao Dong; Xiaoyue Yu; Huwen Wang; Lhakpa Tsamlag; Shuxian Zhang; Ruijie Chang; Zezhou Wang; Yuelin Yu; Rusi Long; Ying Wang; Gang Xu; Tian Shen; Suping Wang; Xinxin Zhang; Hui Wang; Yong Cai
Journal:  Front Med       Date:  2020-05-28       Impact factor: 9.927

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