Literature DB >> 31431620

Integrative and comparative genomic analyses identify clinically relevant pulmonary carcinoid groups and unveil the supra-carcinoids.

N Alcala1, N Leblay1, A A G Gabriel1, L Mangiante1, D Hervas2, T Giffon1, A S Sertier3, A Ferrari3, J Derks4, A Ghantous5, T M Delhomme1, A Chabrier1, C Cuenin5, B Abedi-Ardekani1, A Boland6, R Olaso6, V Meyer6, J Altmuller7, F Le Calvez-Kelm1, G Durand1, C Voegele1, S Boyault8, L Moonen4, N Lemaitre9, P Lorimier9, A C Toffart10, A Soltermann11, J H Clement12, J Saenger13, J K Field14, M Brevet15, C Blanc-Fournier16, F Galateau-Salle17, N Le Stang17, P A Russell18, G Wright18, G Sozzi19, U Pastorino19, S Lacomme20, J M Vignaud20, V Hofman21, P Hofman21, O T Brustugun22,23, M Lund-Iversen23, V Thomas de Montpreville24, L A Muscarella25, P Graziano25, H Popper26, J Stojsic27, J F Deleuze6, Z Herceg5, A Viari3, P Nuernberg7,28, G Pelosi29, A M C Dingemans4, M Milione19, L Roz19, L Brcic26, M Volante30, M G Papotti30, C Caux31, J Sandoval2, H Hernandez-Vargas32, E Brambilla9, E J M Speel4, N Girard33,34, S Lantuejoul3,8,17, J D McKay1, M Foll1, L Fernandez-Cuesta35.   

Abstract

The worldwide incidence of pulmonary carcinoids is increasing, but little is known about their molecular characteristics. Through machine learning and multi-omics factor analysis, we compare and contrast the genomic profiles of 116 pulmonary carcinoids (including 35 atypical), 75 large-cell neuroendocrine carcinomas (LCNEC), and 66 small-cell lung cancers. Here we report that the integrative analyses on 257 lung neuroendocrine neoplasms stratify atypical carcinoids into two prognostic groups with a 10-year overall survival of 88% and 27%, respectively. We identify therapeutically relevant molecular groups of pulmonary carcinoids, suggesting DLL3 and the immune system as candidate therapeutic targets; we confirm the value of OTP expression levels for the prognosis and diagnosis of these diseases, and we unveil the group of supra-carcinoids. This group comprises samples with carcinoid-like morphology yet the molecular and clinical features of the deadly LCNEC, further supporting the previously proposed molecular link between the low- and high-grade lung neuroendocrine neoplasms.

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Year:  2019        PMID: 31431620      PMCID: PMC6702229          DOI: 10.1038/s41467-019-11276-9

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  39 in total

1.  Diagnostic and Predictive Role of DLL3 Expression in Gastroenteropancreatic Neuroendocrine Neoplasms.

Authors:  Chiara Liverani; Alberto Bongiovanni; Laura Mercatali; Federica Pieri; Chiara Spadazzi; Giacomo Miserocchi; Giandomenico Di Menna; Flavia Foca; Sara Ravaioli; Alessandro De Vita; Claudia Cocchi; Giulio Rossi; Federica Recine; Toni Ibrahim
Journal:  Endocr Pathol       Date:  2021-01-06       Impact factor: 3.943

2.  Molecular studies of lung neuroendocrine neoplasms uncover new concepts and entities.

Authors:  Lynnette Fernandez-Cuesta; Matthieu Foll
Journal:  Transl Lung Cancer Res       Date:  2019-12

Review 3.  Genomics of High-Grade Neuroendocrine Neoplasms: Well-Differentiated Neuroendocrine Tumor with High-Grade Features (G3 NET) and Neuroendocrine Carcinomas (NEC) of Various Anatomic Sites.

Authors:  Silvia Uccella; Stefano La Rosa; Jasna Metovic; Deborah Marchiori; Jean-Yves Scoazec; Marco Volante; Ozgur Mete; Mauro Papotti
Journal:  Endocr Pathol       Date:  2021-01-12       Impact factor: 3.943

4.  A molecular map of lung neuroendocrine neoplasms.

Authors:  Aurélie A G Gabriel; Emilie Mathian; Lise Mangiante; Catherine Voegele; Vincent Cahais; Akram Ghantous; James D McKay; Nicolas Alcala; Lynnette Fernandez-Cuesta; Matthieu Foll
Journal:  Gigascience       Date:  2020-10-30       Impact factor: 6.524

5.  Genomic Profiling and Clinicopathological Characteristics of Neuroendocrine Tumors of the Lung in East Asian Patients.

Authors:  Moonsik Kim; Yeon Seung Chung; Kyoung A Kim; Hyo Sup Shim
Journal:  In Vivo       Date:  2020 Nov-Dec       Impact factor: 2.155

6.  Therapeutic targeting of ATR yields durable regressions in small cell lung cancers with high replication stress.

Authors:  Anish Thomas; Nobuyuki Takahashi; Vinodh N Rajapakse; Xiaohu Zhang; Yilun Sun; Michele Ceribelli; Kelli M Wilson; Yang Zhang; Erin Beck; Linda Sciuto; Samantha Nichols; Brian Elenbaas; Janusz Puc; Heike Dahmen; Astrid Zimmermann; Jillian Varonin; Christopher W Schultz; Sehyun Kim; Hirity Shimellis; Parth Desai; Carleen Klumpp-Thomas; Lu Chen; Jameson Travers; Crystal McKnight; Sam Michael; Zina Itkin; Sunmin Lee; Akira Yuno; Min-Jung Lee; Christophe E Redon; Jessica D Kindrick; Cody J Peer; Jun S Wei; Mirit I Aladjem; William Douglas Figg; Seth M Steinberg; Jane B Trepel; Frank T Zenke; Yves Pommier; Javed Khan; Craig J Thomas
Journal:  Cancer Cell       Date:  2021-04-12       Impact factor: 31.743

Review 7.  Pituitary neuroendocrine tumors: a model for neuroendocrine tumor classification.

Authors:  Ashley B Grossman; Shereen Ezzat; Sylvia L Asa; Ozgur Mete; Michael D Cusimano; Ian E McCutcheon; Arie Perry; Shozo Yamada; Hiroshi Nishioka; Olivera Casar-Borota; Silvia Uccella; Stefano La Rosa
Journal:  Mod Pathol       Date:  2021-05-21       Impact factor: 7.842

Review 8.  Molecular Pathology of Pulmonary Large Cell Neuroendocrine Carcinoma: Novel Concepts and Treatments.

Authors:  Masayo Yoshimura; Kurumi Seki; Andrey Bychkov; Junya Fukuoka
Journal:  Front Oncol       Date:  2021-04-22       Impact factor: 6.244

Review 9.  Diagnosis and Molecular Profiles of Large Cell Neuroendocrine Carcinoma With Potential Targets for Therapy.

Authors:  Helmut Popper; Luka Brcic
Journal:  Front Oncol       Date:  2021-07-07       Impact factor: 6.244

10.  Subtype-Based Analysis of Cell-in-Cell Structures in Esophageal Squamous Cell Carcinoma.

Authors:  Yuqi Wang; Zubiao Niu; Lulin Zhou; Yongan Zhou; Qunfeng Ma; Yichao Zhu; Mengzhe Liu; Yinan Shi; Yanhong Tai; Qiuju Shao; Jianlin Ge; Jilei Hua; Lihua Gao; Hongyan Huang; Hong Jiang; Qiang Sun
Journal:  Front Oncol       Date:  2021-06-11       Impact factor: 6.244

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