Literature DB >> 31423653

KEGG Mapper for inferring cellular functions from protein sequences.

Minoru Kanehisa1, Yoko Sato2.   

Abstract

KEGG is a reference knowledge base for biological interpretation of large-scale molecular datasets, such as genome and metagenome sequences. It accumulates experimental knowledge about high-level functions of the cell and the organism represented in terms of KEGG molecular networks, including KEGG pathway maps, BRITE hierarchies, and KEGG modules. By the process called KEGG mapping, a set of protein coding genes in the genome, for example, can be converted to KEGG molecular networks enabling interpretation of cellular functions and other high-level features. Here we report a new version of KEGG Mapper, a suite of KEGG mapping tools available at the KEGG website (https://www.kegg.jp/ or https://www.genome.jp/kegg/), together with the KOALA family tools for automatic assignment of KO (KEGG Orthology) identifiers used in the mapping.
© 2019 The Protein Society.

Entities:  

Keywords:  KEGG; KEGG Mapper; KEGG Orthology; KEGG module; genome annotation; pathway analysis

Mesh:

Substances:

Year:  2019        PMID: 31423653      PMCID: PMC6933857          DOI: 10.1002/pro.3711

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  12 in total

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Review 5.  BlastKOALA and GhostKOALA: KEGG Tools for Functional Characterization of Genome and Metagenome Sequences.

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8.  New approach for understanding genome variations in KEGG.

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