Literature DB >> 31423084

DNA barcode library of megadiverse Austrian Noctuoidea (Lepidoptera) - a nearly perfect match of Linnean taxonomy.

Peter Huemer1, Christian Wieser2, Wolfgang Stark3, Paul D N Hebert4, Benjamin Wiesmair1.   

Abstract

The aim of the study was to establish a nationwide barcode library for the most diverse group of Austrian Lepidoptera, the Noctuoidea, with 5 families (Erebidae, Euteliidae, Noctuidae, Nolidae, Notodontidae) and around 690 species. Altogether, 3431 DNA barcode sequences from COI gene (cytochrome c oxidase 1) belonging to 671 species were gathered, with 3223 sequences >500 bp. The intraspecific divergence with a mean of only 0.17% is low in most species whereas interspecific distances to the Nearest Neighbour are significantly higher with an average of 4.95%. Diagnostic DNA barcodes were obtained for 658 species. Only 13 species (1.9% of the Austrian Noctuoidea) cannot be reliably identified from their DNA barcode (Setina aurita/Setina irrorella, Conisania leineri/Conisania poelli, Photedes captiuncula/Photedes minima, Euxoa obelisca/Euxoa vitta/Euxoa tritici, Mesapamaea secalella/Mesapamea secalis, Amphipoea fucosa/Amphipoea lucens). A similarly high identification performance was achieved by the Barcode Index (BIN) system. 671 species of Austrian Noctuoidea, representing 3202 records with BINs, are assigned to a total of 678 BINs. The vast majority of 649 species is placed into a single BIN, with only 13 species recognised as BIN-sharing (including the barcode sharing species above). Twenty-one species were assigned to more than one BIN and have to be checked for cryptic diversity in the future.

Entities:  

Keywords:  Lepidoptera ; Noctuoidea ; Austria; COI gene; DNA barcoding; species identification

Year:  2019        PMID: 31423084      PMCID: PMC6694074          DOI: 10.3897/BDJ.7.e37734

Source DB:  PubMed          Journal:  Biodivers Data J        ISSN: 1314-2828


Introduction

With about 4070 species, Austria is one of the most diverse countries for in Europe (Huemer 2013), only exceeded by few and usually much larger, mainly Mediterranean countries, particularly Spain, France, Italy, and Greece. Early studies of the Austrian fauna of already date back to the Linnean period and include the famous „Systematisches Verzeichnis der Schmetterlinge der Wienergegend“ by Denis and Schiffermüller (1775), and continued for the last 250 years. The long lasting tradition of species delimitation in (and other insects) was traditionally based on morphological features. This approach has recently dramatically changed with molecular methods, particularly DNA barcoding (Hebert et al. 2003b). This method of species identification by means of DNA barcode sequences is essentially based on the assumption of constant inter-specific divergences between sister species, even when considering intraspecific variation. This means that a single specimen of one species is grouped closer to the next specimen of the same species than to the next species, and there is no genetic overlap between the two species. Within the last 10 years, more than 3000 species of from the Austrian territory have been barcoded and the results of extensive inventories were published in parts (Huemer and Hebert 2015, Huemer and Hebert 2016). However, a complete nationwide analysis of species-rich groups at the superfamily or family level has so far been carried out only for the butterflies (Huemer and Wiesmair 2017). We now test barcode performance of a further large and representative superfamily of Austrian , the , with altogether five families, viz. , , , and , that cover ca. 690 species (Huemer 2013).

Material and methods

Sampling strategy

Voucher material was principally restricted to Austrian samples, with few exceptions of supplementing species known from the country but for which we failed to get sequence data. In order to study geographic variation we divided Austria in three major areas, which are concordant with political provinces and partially reflect biogeographic areas: a) North-Eastern Austria (Burgenland, Vienna, Lower Austria, Upper Austria), b) Southern Austria (Styria, Carinthia, East Tyrol), and c) Western Austria (Salzburg, North Tyrol, Vorarlberg). We then tried to obtain 4 specimens per species, with a minimum of one sample from each of the three areas. Similarly, the sought number of samples for regionally restricted species only present in one or two core areas was 4 specimens. Altogether, we selected 3431 specimens of Austrian , including 63 specimens from 9 additional countries: (647), (1), (2470), (90) and (224). Taxonomy follows Huemer (2013), Witt and Ronkay (2011). Recently collected samples were taken from various museum collections, particularly from Tiroler Landesmuseum Ferdinandeum (Innsbruck) (2000), Landesmuseum Kärnten (Klagenfurt) (523) and Niederösterreichisches Landesmuseum (St. Pölten, coll. Stark) (561), and from 23 additional institutional or private collections (348). Unfortunately, material of few species was not available in the necessary quality standards for DNA barcoding, viz. too old and likely degraded. Only in exceptional cases of very rare species we used such vouchers and tried to recover sequences with NGS protocols.

DNA barcoding

DNA barcode sequences of the mitochondrial COI gene (cytochrome c oxidase 1) were obtained from 3431 specimens. DNA samples from dried legs were prepared according to prescribed standards using the high-throughput protocol of deWaard et al. (2008). Samples were processed at the Canadian Centre for DNA Barcoding (CCDB, Biodiversity Institute of Ontario, University of Guelph) to obtain DNA barcodes. DNA sequencing resulted in a barcode fragment of >500 bp for 3223 specimens belonging to 671 species, with 3160 sequences corresponding to the criteria of barcode compliance. 2962 sequences cover the full 658 bp, exceptionally with a high amount of ambiguous bases, particularly for the few sequences recovered with NGS protocols, whereas 3206 are attached to a BIN. We did not analyse 44 samples with sequences shorter than 500 bp, and sequencing failed for 164 specimens. Details of successfully sequenced voucher specimens, including complete voucher data and images, can be accessed in the Barcode of Life Data Systems (Ratnasingham and Hebert 2007) in the public dataset "DS-LEATNOCT () of Austria" (http://dx.doi.org/10.5883/DS-LEATNOCT). Finally, sequences were submitted to GenBank.

Data analysis

Identification performance was tested using analytical tools in BOLD systems v. 4.0 (http://www.boldsystems.org). Degrees of intra- and interspecific variation in the DNA barcode fragments were calculated under the Kimura 2 parameter (K2P) model of nucleotide substitution using analytical tools. All species were tested for the presence of a barcode gap, which determines the distribution of distances within one species and to the Nearest Neighbour. We furthermore tested the congruence of Linnean taxonomy with the recently implemented Barcode Index Number (BIN) (Ratnasingham and Hebert 2013). This system clusters sequences into so-called Operational Taxonomic Units (OTUs), regardless of their previous taxonomic assignment. It is based on a two-stage algorithm that groups the sequences in a cluster and automatically assigns new sequences. All sequences >500 bp and covering some other quality requirements are recorded independently of the project origin and assigned to a BIN (Ratnasingham and Hebert 2013). Ultimately, the BIN system is a tried and tested means of checking the concordance between morpho-taxonomically based species determinations and COI sequence data. Neighbour-Joining (NJ) and Maximum-Likelihood (ML) trees were constructed using MEGA 7 (Kumar et al. 2016). Node confidences were assessed using 500 bootstrap replicates.

Results

Successfully sequenced species inventory

The most updated faunistic Catalogue of Austrian includes 686 species of (Huemer 2013), supplemented by 3 recently discovered species (, , ) (Huemer 2016, Wieser 2016). We obtained barcode sequences for 671 species of Austrian , representing around 97.8% of the currently known fauna and belonging to the following families: (478 spp.), (139 spp.), (36 spp.), (17 spp.), and (1 sp.). The 3223 sequences > 500 bp group as follows: (2341), (591), (207), (83), and (1).

Barcode-based species delimitation

A prerequisite for the successful genetic identification of an individual of a species is the presence of a barcoding gap to the genetically most similar species. This means that the maximum genetic distance from an individual within the species A must be smaller than the distance to the closest individual of the nearest species B. The intraspecific divergence in Austrian is low, with a mean value of only 0.17% (min. 0% to max. 2.27%) and an average maximum divergence of 0.42% (min. 0% to max. 4.63%), but unknown for 118 species with only singleton sequences. The interspecific distances to the Nearest Neighbour are significantly higher at an average of 4.95% (min. 0%, max. 14.35%). Out of 671 analysed species, only 13 species (1.9%) could not be reliably identified by their DNA barcode (, , , , , , , , , , , , ). Only 49 species (7.28%) of the species stock have an interspecific divergence to the Nearest Neighbour of less than 2%. Extensive studies in many groups assume a threshold of approximately 2-3% interspecific divergence as the critical limit to species identification (Foottit et al. 2008, Hausmann et al. 2011a, Zhu et al. 2017). However, whether a barcoding gap exists for individual species pairs has to be examined in each individual case, and for 37 of the 49 species with interspecific divergence <2% we have found a barcoding gap. In comparison, an analysis of sequences >500 bp of all species and specimens of Austrian (553 spp.) shows a mean interspecific DNA barcode distance of 10.02% (min. 2.49%, max. 21.95%), whereas in congeneric species the mean distance is 6.06% (min. 0%, max. 16.50%).

Species delimitation with BINs (Barcode Index Numbers)

671 species of Austrian representing 3202 records with BINs are assigned to a total of 678 BINs. The vast majority of 649 species is placed into a single BIN (on a national scale), including 13 barcode-sharing species, and there is little evidence of taxonomic mismatches in this group. Twenty-one species are attached to multiple BINs and should be checked for potential cryptic diversity. In this group, only three species of (, , ) and one () have three BINs, whereas 17 species are characterised by two BINs. Taking into account all known BINs at European level, the number of species with multiple BINs increases to 55 species, with the above-mentioned showing the highest amount of BINs (ranging from 4 to 9) (Table 3). All these taxa have to be further analysed in an integrative approach and likely at least some of them represent cryptic diversity (see also below).
Table 3.

Austrian species of with multiple BINs in Austria and on the European level (likely cryptic species not included).

Taxa BINs Austria BINs Europe
Setina irrorella 39
Coscinia cribaria 38
Setina aurita 34
Dryobotodes eremita 33
Acronicta megacephala 23
Agrotis vestigialis 23
Bryophila ereptricula 22
Conistra erytrocephala 22
Eilema sororcula 22
Epatolmis luctifera 22
Euchalcia modestoides 22
Euxoa decora 22
Hadena magnolii 22
Hecatera dysodea 22
Mythimna ferrago 22
Opigena polygona 22
Pachetra sagittigera 22
Parstichtis suspecta 22
Rviula sericealis 22
Sideridis lampra 22
Tholera cespitits 22
Apamea maillardi 12
Acronicta euphorbiae 13
Agrotis bigramma 13
Bryophila raptricula 13
Euchalcia variabilis 13
Ochropleura plecta 13
Orthosia cerasi 13
Peridea anceps 13
Amphipyra tetra 12
Apamea monoglypha 12
Arctia villica 12
Caradrina aspersa 12
Chelis maculosa 12
Conisania luteago 12
Diarsia mendica 12
Dichygyris forcipula 12
Drymonia dodonaea 12
Drymonia querna 12
Drymonia ruficornis 12
Eublemma parva 12
Eugnorisma depuncta 12
Furcula furcula 12
Griposia aprilina 12
Lateroligia ophiogramma 12
Notodonta tritophus 12
Omphalophana anthirrhinii 12
Schinia cardui 12
Schrankia costaestrigalis 12
Shargacucullia thapsiphaga 12
Thaeumetopoea processioneae 12
Watsonarctia deserta 12
Xestia lorezi 12(3)
Xestia ohreago 12
Xestia speciosa 12(4)
The proportion of species with multiple BINs shows a considerable variation between different families, ranging from 0% to 19.4% (on a European scale): (36 spp., 19.4%), (139 spp., 7.9%), (478 spp., 7.7%), (17 spp., 0%) and (1 sp., 0%). In particular, the high number of multiple BIN species on a continental scale in is surprising and clearly indicates a hitherto underestimated diversity. However, on a national Austrian level the genetic diversity in this family is not reflected. Sixty-three out of 125 singleton BINs in our study were previously unknown in BOLD and are so far only reported from Austria.

Discordance of morphology and DNA barcodes

Genetic discrimination with DNA barcodes failed for 6 Austrian species pairs/triplets (including 13 species) due to barcode sharing or overlap. and are well documented examples of widespread introgressive hybridization (Trawöger 1991) and cannot be separated by DNA barcodes. In contrast, Ortiz et al. (2017) reported barcode divergences for the species and based on a limited number of sequences from Spain. On a European scale, however, these results are incomprehensible and the different species cluster without specific grouping, thus indicating a much more widespread hybridization scenario. The species pair is easily separated by structures of the male and female genitalia (Zilli et al. 2005). Interestingly, DNA barcode sharing in the genus is not an isolated case and, e.g., is also observed in the morphologically well separated species pair and (pers. data). The taxonomy of both taxa was disputed for a long time. Depending on the author, was treated either as a subspecies of or as a distinct species. Varga and Ronkay (1991) separated both on species level and described subtle differences in the male as well as in the female genitalia. Hacker et al. (2001) also shared thisopinion. The aforementioned authors furthermore distinguished several subspecies in both taxa, which were mainly defined by phenotype combined with allopatric distribution patterns. The small differences in the genitalia and the distinct coloration of the different subspecies could be an indication for a single, widespread species with fragmented distribution and polymorphy in wing coloration, which could depend on different climatic and habitat characteristics. Summarising, the subtle differences in morphology and completely identical barcodes on species level indicate possible taxonomic oversplitting and we suggest further integrative studies to solve this problem. – – These three taxonomically undisputed species of a notoriously difficult genus are well separated by phenotypical appearance. However, interspecific divergence in DNA barcodes is very low with 0.15%, similar to intraspecific variation with at most 0.17%, and identification with DNA barcodes consequently fails. The species pair is easily recognizable by external morphology and, according to Hausmann et al. (2011b), also shows a minimum pairwise distance of 0.64% in DNA barcodes. However, based on supplementing sequences, both species are not unequivocally separated by their barcodes, which can partially overlap. This species pair is usually easily separated by genitalia morphology (Zilli et al. 2005). Analysis of 15 and 5 resulted in a very low minimum pairwise distance of 0.31% in DNA barcodes between both species. However, diagnostic substitutions in the barcode region, as stated by Hausmann et al. (2011b) for German samples, could not be confirmed. BOLD analytical tools only fixed 3 partial characters for and 73 for . Considering the comparatively large intraspecific divergence of maximum 0.81% in and 0.62% in in our sample and the DNA barcode overlap in further yet unverified samples from BOLD, we consider supplementing studies necessary. A third taxon, viz. , is currently considered as a likely hybrid (Hausmann et al. 2011b). A similar case is found in the genus , with considered as a hybrid of and and barcode sharing with the latter (Fibiger et al. 2010). On a European scale, several additional taxa cannot be identified from COI sequences (Table 2). However, these genetically cryptic species pairs/triplets are so far only known from a single species in Austria.
Table 2.

BIN-sharing Austrian species of with multiple BINs on the European level and barcode sharing/overlap (alphabetical arrangement; *species not reported from Austria).

Species BIN sharing Barcode overlap
Agrochola nitida/ A. pistacinoides*/ A. dujardini*yesyes
Agrotis fatidica/ A. proverai*yesno
Agrotis vestigialis/ A. sabulosa*yesno
Amhipoea fucosa/ A. lucensyesyes
Apamea maillardi / A. schildei*yesyes
Cerura vinula/ C. iberica*yesyes
Chersotis margaritacea/ C. cyrnea*yesno
Conisania leineri/ C. poelliyesyes
Cryphia algae/ C. ochsi*/ C. pallida*yesno
Diachrysia stenochrysis/ D. chrysitisyesno
Dichagyris forcipula/ D. celsicola*yesyes
Euxoa oblisca/ E. vitta/ E. triticiyesyes
Griposia aprilina/ G. wegneri*/ G. skyvai*/ G. bouveti*yesyes
Hadena capsincola/ H. bicruris/ H. atlantica*/ H. azorica*yesyes
Lacanobia splendens/ L. oleraceayesno
Mesapama secalis/ M. secalellayesyes
Mniotype adusta/ M. bathensis*yesyes
Noctua pronuba/ N. atlantica*yesno
Nola aerugula/ N. holsatica*yesyes
Photedes captiuncula/ P. minimayesyes
Setina aurita/ S. irrorellayesyes
Shargacucullia thapsiphaga/ S. caninae*yesyes
Xestia rhaetica/ X. fennica*yesyes

Deep intraspecific splits - potential cryptic diversity

Fourteen species with a maximum intraspecific distance >2% were found, a threshold which is often used for insect species delimitation (Table 1). The cases which could include cryptic diversity are discussed additionally.
Table 1.

Species with a maximum intraspecific distance >2%.

Species Sample size Max. intraspecific distance
Parastichtis suspecta 84.63
Bryophila ereptricula 124.43
Coscinia cribraria 74.10
Mythimna ferrago 64.10
Dryobotodes eremita 83.64
Eilema sororcula 63.29
Hypenodes humidalis 62.33
Rivula sericealis 62.33
Setina aurita 92.33
Setina irrorella 52.33
Enargia paleacea 112.32
Hecatera dysodea 42.17
Sideridis lampra 42.02
Euxoa tritici 102.01
This taxon shows a particularly high maximum intraspecific distance of 4.43%. A NJ analysis results in two well-separated clusters, one with a south-eastern European distribution pattern and the other restricted to the western part of the continent. Despite the deep barcode splits, a first examination of the male genitalia shows no obvious diagnostic features supporting two separate species (Fig. 1). The eastern one (Greek population) was described as due to differences in the coloration of the wings. This subspecies was synonymised in a revision of this group (Fibiger et al. 2009).
Figure 1.

NJ-Tree of . Source: boldsystems.org.

The barcodes of this taxon are divided into three well-separated clusters: one with a large number of samples from most of Europe and Canada, one restricted to Canada and a third consisting of two samples from eastern Austria (Fig. 2). The dissection of the male genitalia of specimens from two clusters occurring in Austria did not give evidence of two different species. However, further integrative research is needed to reach a conclusion.
Figure 2.

NJ-Tree of . The scale only refers to the branches between the species. The width of the triangles represents the number of samples, the depth the relative genetic variation within the cluster (2× scale). Source: boldsystems.org.

shows two different clusters; both do not reflect a geographical pattern (Fig. 3).
Figure 3.

NJ-Tree of European species of the genus . Unresolved cases highlighted in red; abbreviations of countries follow ISO 3166-1 alpha-3. The scale only refers to the branches between the species. The width of the triangles represents the number of samples, the depth the relative genetic variation within the cluster (2x scale). Source: boldsystems.org.

In his thorough revision of Nearctic , Schmidt (2010) described as sister taxon of the European . Diagnostic characters were identified in subtle morphology, deviating DNA barcodes, and in the distribution area, Nearctic versus Palearctic. It therefore comes as a surprise that we now found two barcode clusters of in Europe (and Austria), one of which includes . We assume from this pattern that is either a species with Holarctic distribution or a synonym of , leaving the identity of specimens in the second cluster unresolved. The problem requires a revision of available names from Europe not yet or insufficiently considered and an in-depth analysis of alleged diagnostic characters of and sensu Schmidt (Fig. 4).
Figure 4.

ML-Tree of a and . Source: boldsystems.org.

The species , , and show high intraspecific genetic diversity. In all these species, several different clusters, usually without geographic pattern, could be found in DNA barcode sequences. All species remain unexamined and have to be analysed in future in an integrative approach.

Cases of overlooked species

Three species are currently not identified on species level and belong to additional and hitherto overlooked species for the Austrian fauna, supplemented by a hitherto neglected species pair. sp. Already Huemer (2013) found deep splits in DNA barcodes of the widespread , which were interpreted as an indication of possible cryptic diversity. After extensive studies of morphology and applying state-of-the art molecular methods such as ddRadseq, this hypothesis is now well supported and an extensive review including the description of a new species is in preparation (Ronkay et al., in prep.). sp. This remarkable species is phenotypically very similar to the widespread , with which it was initially mixed up. However, DNA barcodes of three simultaneously collected specimens from easternmost Austria (Burgenland, Hackelsberg) are far distant from any of the European and species. The nearest match to its BIN (BOLD:ADF0473) in BOLD is from North America with a 5.67% distance. Unfortunately, male genitalia morphology often only shows weak or subtle diagnostic characters in the genera and and an integrative analysis of this problem seems mandatory. This species pair has subtle differences in the wing pattern as well as in the genitalia features. Therefore, the distribution and the status of these taxa is controversially discussed. Ronkay et al. (2001) separated two species, with an Antlantico-Mediterranean and with Ponto-Mediterranean distribution. Orhant (2012) found only one barcode cluster in French specimens and consequently synonymised both taxa. However, in this study, only true have been sequenced, whereas correctly identified , a species described from Lower Austria, were accidentally not taken into account. It was therefore not a surprise when Haslberger and Segerer (2016) found two separate clusters, indicating species status for and . Both these clusters are found in Austria, but further taxonomic work is needed to solve this problem. A taxonomic study focusing on these two taxa is in progress. sp. A first and preliminary analysis of morphological traits in gives no evidence of cryptic diversity, whereas further genetic analysis of nuclear genes support two different species. Further integrative taxonomic work will be needed to solve this question.

Cases of likely taxonomic oversplitting

Two widely accepted species pairs/groups with barcode sharing or overlap are considered as likely taxonomic oversplitting since neither DNA barcodes nor morphology convincingly support species status. These cases are counted as a single species in our analyses and are in strong need of thorough, integrative revisionary work (but see also spp. above). s.l. – This species complex is one of the most controversial taxonomic problems in the European , including the disputed taxa , and . Following in-depth studies of morphology and DNA barcodes Hausmann et al. (2011b), Mutanen (2005) and Behounek (2011) found no support of a species-complex and the split into three species was consequently not accepted by Huemer (2013). DNA barcoding of Austrian (nec segnilis) leads to strong doubts as to whether (at least) Austrian are not also . Separation of these two species follows subtle morphological characters and an allopatric distribution pattern (Hacker 1996, Hacker et al. 2001). However, an analysis of 46 barcode sequences in BOLD from distribution areas of both species resulted in the absence of a barcode gap between both alleged taxa, and does not support the two species hypothesis.

Discussion

are the most diverse group of of Austria (Huemer 2013), and with almost 700 species or about 17% of the national fauna, are highly representative for this insect order. The successful sequencing of approximately 98% of the species inventory of Austrian is therefore per se an important contribution to Austria's national DNA barcode library. 98.2% of the successfully sequenced 671 species can be reliably distinguished from other species by their barcode. Similarly, the species differentiation with BINs results in successful delimitation of 96.7% of the species inventory, which are all attributable to a single BIN. Only 12 species cannot be reliably distinguished from the barcode while, conversely, the interspecific divergence to the Nearest Neighbour is >2% in just under 93% of the species. These astonishing similarities with classical, morphology-based Linnean taxonomic concepts are confirmed by other studies, dealing with a larger set of a regional fauna, e.g., Hausmann et al. (2011b) found diagnostic DNA barcodes for 99% of Bavaria's larger butterflies and moths. Huemer and Hebert (2016) recognised a correct identification from DNA barcodes for 97% out of ca. 2500 species from an alpine transect in South Tyrol and Tyrol. A similar high proportion of diagnostic DNA barcodes can be found in many other animal groups in Europe. Overall, most studies demonstrate a high degree of effectiveness of DNA barcoding for reliable genetic species delineation, assuming high standards of morphological determination of the samples tested. Thus, Schmid-Egger et al. (2019) were able to differentiate 99% of the species via DNA barcode divergences in several Hymenopteran families. 92.5% of more than 3500 beetle species from Germany and neighbouring regions could be unambiguously identified with DNA barcodes (Hendrich et al. 2014). Similar results are reported by Morinière et al. (2017) for aquatic insects (, , ), with 89.5% of the species assigned to a single BIN, while most of the multiple BIN species were ultimately genetically determinable due to the uniqueness of the BINs. However, in some insect orders, such as the , species delineation by means of DNA barcodes is more challenging due to, e.g., widespread introgression, which significantly reduces the effectiveness of the method (Hawlitschek et al. 2017). It is one of the shortcomings of DNA barcoding that sequences of a single mitochondrial gene fragment are unsuitable to resolve introgression of mitochondrial DNA as a result of hybridizations (Hebert et al. 2003a, Hebert et al. 2003b), incomplete lineage sorting of mitochondrial haplotypes, occurrence of nuclear mitochondrial pseudogenes, or the influence of endosymbiotic bacteria such as . However, in these problematic cases seem to be rare, which ultimately contributes to a very high success rate in genetic species discrimination. Not surprisingly, Ortiz et al. (2017) found diagnostic DNA barcodes for a complete set of 160 Iberian (). A much more comprehensive, continental study of from North America, covering 1541 species, revealed increasing problems with a higher area covered, but here too 90% of the species could be indisputably distinguished by their DNA barcodes, even 95.6% on a provincial basis (Zahiri et al. 2014). However, this high DNA barcode performance in cannot be transferred one-to-one to other groups of , and is, e.g., significantly lower in Austrian butterflies (Huemer and Wiesmair 2017). The few cases of detected discordance between DNA barcodes and Linnean taxonomy deserve special attention in future studies. Possible cases of introgression are found only as rare exceptions in 6 species pairs/triplets. Similarly, possible cryptic diversity seems to be rare and mainly includes the 15 species with relatively low DNA barcode splits <2% that require further investigations. These species set partially overlaps with the 22 species of Austrian with 2 or 3 BINs. Remarkable and obviously overlooked, possibly even undescribed species are sp. and sp. Conversely, two cases of likely taxonomic oversplitting could be identified.

Conclusions

Insect decline is currently a public issue and indeed many studies indicate that we are in the midst of a dramatic biodiversity crisis that seriously affects insects (Sánchez-Bayo and Wyckhuys 2019). However, long-term data sets on the phenomenon of insect decline are scarce and monitoring programs the exception (Segerer and Rosenkranz 2018). At the same time, a considerable decline in the number of experts in this animal class has been observed (Frobel and Schlumprecht 2016), with all the resulting risks for taxonomy, agriculture and forestry, nature conservation, etc. Genetic species identifications by means of DNA barcoding, in our opinion, can provide assistance in mitigating the feared increasing deficit of taxonomic expertise in the future. A prerequisite, however, is the reliable delineation of species by unique gene sequences and, consequently, the development of DNA barcode reference libraries. The DNA barcode study of Austrian is at the same time a contribution to a national DNA barcode library and proof of the effectiveness of genetic species delineation.
  15 in total

1.  Biological identifications through DNA barcodes.

Authors:  Paul D N Hebert; Alina Cywinska; Shelley L Ball; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-02-07       Impact factor: 5.349

2.  Barcoding animal life: cytochrome c oxidase subunit 1 divergences among closely related species.

Authors:  Paul D N Hebert; Sujeevan Ratnasingham; Jeremy R deWaard
Journal:  Proc Biol Sci       Date:  2003-08-07       Impact factor: 5.349

3.  Assembling DNA barcodes. Analytical protocols.

Authors:  Jeremy R deWaard; Natalia V Ivanova; Mehrdad Hajibabaei; Paul D N Hebert
Journal:  Methods Mol Biol       Date:  2008

4.  Species identification of aphids (Insecta: Hemiptera: Aphididae) through DNA barcodes.

Authors:  R G Foottit; H E L Maw; C D VON Dohlen; P D N Hebert
Journal:  Mol Ecol Resour       Date:  2008-11       Impact factor: 7.090

5.  A comprehensive DNA barcode database for Central European beetles with a focus on Germany: adding more than 3500 identified species to BOLD.

Authors:  Lars Hendrich; Jérôme Morinière; Gerhard Haszprunar; Paul D N Hebert; Axel Hausmann; Frank Köhler; Michael Balke
Journal:  Mol Ecol Resour       Date:  2014-12-20       Impact factor: 7.090

6.  MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Authors:  Sudhir Kumar; Glen Stecher; Koichiro Tamura
Journal:  Mol Biol Evol       Date:  2016-03-22       Impact factor: 16.240

7.  DNA barcoding the geometrid fauna of Bavaria (Lepidoptera): successes, surprises, and questions.

Authors:  Axel Hausmann; Gerhard Haszprunar; Paul D N Hebert
Journal:  PLoS One       Date:  2011-02-14       Impact factor: 3.240

8.  A DNA-based registry for all animal species: the barcode index number (BIN) system.

Authors:  Sujeevan Ratnasingham; Paul D N Hebert
Journal:  PLoS One       Date:  2013-07-08       Impact factor: 3.240

9.  bold: The Barcode of Life Data System (http://www.barcodinglife.org).

Authors:  Sujeevan Ratnasingham; Paul D N Hebert
Journal:  Mol Ecol Notes       Date:  2007-05-01

10.  A transcontinental challenge--a test of DNA barcode performance for 1,541 species of Canadian Noctuoidea (Lepidoptera).

Authors:  Reza Zahiri; J Donald Lafontaine; B Christian Schmidt; Jeremy R Dewaard; Evgeny V Zakharov; Paul D N Hebert
Journal:  PLoS One       Date:  2014-03-25       Impact factor: 3.240

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Authors:  Peter Huemer; Jean Haxaire; Kyung Min Lee; Marko Mutanen; Oleg Pekarsky; Stefano Scalercio; László Ronkay
Journal:  Zookeys       Date:  2020-04-16       Impact factor: 1.546

2.  A DNA barcode survey of insect biodiversity in Pakistan.

Authors:  Muhammad Ashfaq; Arif M Khan; Akhtar Rasool; Saleem Akhtar; Naila Nazir; Nazeer Ahmed; Farkhanda Manzoor; Jayme Sones; Kate Perez; Ghulam Sarwar; Azhar A Khan; Muhammad Akhter; Shafqat Saeed; Riffat Sultana; Hafiz Muhammad Tahir; Muhammad A Rafi; Romana Iftikhar; Muhammad Tayyib Naseem; Mariyam Masood; Muhammad Tufail; Santosh Kumar; Sabila Afzal; Jaclyn McKeown; Ahmed Ali Samejo; Imran Khaliq; Michelle L D'Souza; Shahid Mansoor; Paul D N Hebert
Journal:  PeerJ       Date:  2022-04-25       Impact factor: 3.061

3.  The genome sequence of the clay, Mythimna ferrago (Fabricius, 1787).

Authors:  Douglas Boyes; Melanie Gibbs
Journal:  Wellcome Open Res       Date:  2022-07-04

4.  DNA barcoding of Austrian snow scorpionflies (Mecoptera, Boreidae) reveals potential cryptic diversity in Boreus westwoodi.

Authors:  Lukas Zangl; Elisabeth Glatzhofer; Raphael Schmid; Susanne Randolf; Stephan Koblmüller
Journal:  PeerJ       Date:  2021-05-14       Impact factor: 2.984

  4 in total

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