| Literature DB >> 31417790 |
Mehmet Akkurt1, Namiq Q Shikhaliyev2, Ulviyya F Askerova2, Sevinc H Mukhtarova2, Gunay Z Mammadova2, Flavien A A Toze3.
Abstract
In the title compound, C16H11Cl2N3O, the 4-meth-oxy-substituted benzene ring makes a dihedral angle of 41.86 (9)° with the benzene ring of the benzo-nitrile group. In the crystal, mol-ecules are linked into layers parallel to (020) by C-H⋯O contacts and face-to-face π-π stacking inter-actions [centroid-centroid distances = 3.9116 (14) and 3.9118 (14) Å] between symmetry-related aromatic rings along the a-axis direction. A Hirshfeld surface analysis indicates that the most important contributions to the crystal packing are from Cl⋯H/H⋯Cl (22.8%), H⋯H (21.4%), N⋯H/H⋯N (16.1%), C⋯H/H⋯C (14.7%) and C⋯C (9.1%) inter-actions.Entities:
Keywords: 4-methoxyphenyl ring; Hirshfeld surface analysis; benzonitrile; crystal structure; face-to-face π–π stacking interactions
Year: 2019 PMID: 31417790 PMCID: PMC6690439 DOI: 10.1107/S2056989019009642
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C2—H2⋯O1i | 0.95 | 2.47 | 3.391 (2) | 165 |
| C16—H16 | 0.98 | 2.59 | 3.516 (3) | 158 |
Symmetry codes: (i) ; (ii) .
Figure 2A view of the crystal packing of the title compound. The weak C—H⋯O interactions are shown as dashed lines and H atoms not involved in hydrogen bonding have been omitted for clarity.
Figure 3A packing diagram of the title compound, viewed along the a axis. The C—H⋯O interactions are shown as dashed lines.
Figure 4A view of the three-dimensional Hirshfeld surface of the title compound mapped over d norm showing the C—H⋯O interactions (dashed lines).
Summary of short interatomic contacts (Å) in the title compound
| Contact | Distance | Symmetry operation |
|---|---|---|
| Cl1⋯H5 | 3.05 | 1 + |
| Cl1⋯H10 | 2.98 |
|
| O1⋯H16 | 2.59 | 1 + |
| Cl2⋯N3 | 3.462 | 1 − |
| H16 | 2.90 | 2 − |
| O1⋯H2 | 2.47 | 1 + |
| H4⋯N3 | 2.78 | − |
| H4⋯N3 | 2.82 | 1 − |
| H13⋯H13 | 2.52 | 1 − |
Figure 5View of the three-dimensional Hirshfeld surface of the title compound plotted over electrostatic potential energy in the range −0.0500 to 0.0500 a.u. using the STO-3 G basis set at the Hartree–Fock level of theory. Hydrogen-bond donors and acceptors are shown as blue and red regions around the atoms, corresponding to positive and negative potentials, respectively.
Figure 6Hirshfeld surface of the title compound plotted over shape-index.
Percentage contributions of interatomic contacts to the Hirshfeld surface
| Contact | Percentage contribution |
|---|---|
| Cl⋯H/H⋯Cl | 22.8 |
| H⋯H | 21.4 |
| N⋯H/H⋯N | 16.1 |
| C⋯H/H⋯C | 14.7 |
| C⋯C | 9.1 |
| O⋯H/H⋯O | 5.3 |
| N⋯C/C⋯N | 4.2 |
| Cl⋯N/N⋯Cl | 2.6 |
| Cl⋯C/C⋯Cl | 1.7 |
| Cl⋯Cl | 1.6 |
| C⋯O/O⋯C | 0.4 |
| N⋯N | 0.2 |
Figure 7The Hirshfeld surface representations and two-dimensional fingerprint plots of the title compound showing all interactions, and the most significant individual types of interactions.
Experimental details
| Crystal data | |
| Chemical formula | C16H11Cl2N3O |
|
| 332.18 |
| Crystal system, space group | Monoclinic, |
| Temperature (K) | 100 |
|
| 3.9117 (8), 25.109 (5), 14.968 (3) |
| β (°) | 97.07 (3) |
|
| 1459.0 (5) |
|
| 4 |
| Radiation type | Synchrotron, λ = 0.80246 Å |
| μ (mm−1) | 0.63 |
| Crystal size (mm) | 0.25 × 0.05 × 0.03 |
| Data collection | |
| Diffractometer | Rayonix SX165 CCD |
| Absorption correction | Multi-scan ( |
|
| 0.850, 0.975 |
| No. of measured, independent and observed [ | 22750, 3144, 2978 |
|
| 0.068 |
| (sin θ/λ)max (Å−1) | 0.639 |
| Refinement | |
|
| 0.045, 0.123, 1.07 |
| No. of reflections | 3144 |
| No. of parameters | 201 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.30, −0.46 |
Computer programs: Marccd (Doyle, 2011 ▸), iMosflm (Battye et al., 2011 ▸), SHELXLS97 (Sheldrick, 2008 ▸), SHELXL2016 (Sheldrick, 2015 ▸), ORTEP-3 for Windows (Farrugia, 2012 ▸) and PLATON (Spek, 2009 ▸).
| C16H11Cl2N3O | |
| Monoclinic, | Synchrotron radiation, λ = 0.80246 Å |
| Cell parameters from 600 reflections | |
| θ = 1.8–30.0° | |
| µ = 0.63 mm−1 | |
| β = 97.07 (3)° | |
| Needle, orange | |
| 0.25 × 0.05 × 0.03 mm |
| Rayonix SX165 CCD diffractometer | 2978 reflections with |
| /f scan | |
| Absorption correction: multi-scan (Scala; Evans, 2006) | θmax = 30.9°, θmin = 1.8° |
| 22750 measured reflections | |
| 3144 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.30 e Å−3 | |
| 3144 reflections | Δρmin = −0.46 e Å−3 |
| 201 parameters | Extinction correction: SHELXL2018 (Sheldrick, 2015), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.049 (5) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| C1 | 0.4566 (5) | 0.66476 (7) | 0.67302 (12) | 0.0215 (4) | |
| H1 | 0.463381 | 0.687885 | 0.723440 | 0.026* | |
| C2 | 0.3294 (5) | 0.61359 (7) | 0.67752 (13) | 0.0221 (4) | |
| H2 | 0.244963 | 0.601450 | 0.730780 | 0.026* | |
| C3 | 0.3261 (5) | 0.57981 (7) | 0.60312 (13) | 0.0215 (4) | |
| C4 | 0.4409 (5) | 0.59720 (7) | 0.52351 (12) | 0.0228 (4) | |
| H4 | 0.436434 | 0.574023 | 0.473208 | 0.027* | |
| C5 | 0.5621 (5) | 0.64912 (7) | 0.51906 (12) | 0.0214 (4) | |
| H5 | 0.636172 | 0.661965 | 0.464913 | 0.026* | |
| C6 | 0.5748 (5) | 0.68213 (7) | 0.59378 (12) | 0.0197 (4) | |
| C7 | 0.9517 (5) | 0.80678 (7) | 0.65882 (12) | 0.0199 (4) | |
| C8 | 1.0851 (5) | 0.82299 (7) | 0.74254 (13) | 0.0218 (4) | |
| C9 | 0.9344 (5) | 0.84019 (7) | 0.57700 (12) | 0.0199 (4) | |
| C10 | 1.0545 (5) | 0.82125 (7) | 0.49838 (13) | 0.0210 (4) | |
| H10 | 1.155098 | 0.786823 | 0.498109 | 0.025* | |
| C11 | 1.0283 (5) | 0.85197 (7) | 0.42152 (12) | 0.0213 (4) | |
| H11 | 1.108147 | 0.838403 | 0.368576 | 0.026* | |
| C12 | 0.8849 (5) | 0.90295 (7) | 0.42105 (12) | 0.0198 (4) | |
| C13 | 0.7626 (5) | 0.92238 (7) | 0.49813 (13) | 0.0208 (4) | |
| H13 | 0.662374 | 0.956840 | 0.498230 | 0.025* | |
| C14 | 0.7886 (5) | 0.89082 (7) | 0.57518 (13) | 0.0210 (4) | |
| H14 | 0.704725 | 0.904154 | 0.627752 | 0.025* | |
| C15 | 0.1992 (5) | 0.52632 (8) | 0.61044 (13) | 0.0249 (4) | |
| C16 | 0.7123 (5) | 0.98149 (7) | 0.33590 (13) | 0.0246 (4) | |
| H16A | 0.731494 | 0.997143 | 0.276745 | 0.037* | |
| H16B | 0.823240 | 1.005003 | 0.383095 | 0.037* | |
| H16C | 0.468596 | 0.977180 | 0.343527 | 0.037* | |
| N1 | 0.7074 (4) | 0.73473 (6) | 0.58427 (10) | 0.0207 (3) | |
| N2 | 0.8218 (4) | 0.75417 (6) | 0.65946 (10) | 0.0212 (3) | |
| N3 | 0.1007 (5) | 0.48385 (7) | 0.61986 (13) | 0.0345 (4) | |
| O1 | 0.8781 (4) | 0.93062 (5) | 0.34222 (9) | 0.0233 (3) | |
| Cl1 | 1.07739 (13) | 0.78390 (2) | 0.83659 (3) | 0.02703 (18) | |
| Cl2 | 1.27416 (13) | 0.88356 (2) | 0.76669 (3) | 0.02496 (18) |
| C1 | 0.0237 (9) | 0.0195 (9) | 0.0207 (9) | 0.0005 (7) | −0.0001 (7) | 0.0001 (7) |
| C2 | 0.0246 (9) | 0.0192 (9) | 0.0220 (9) | 0.0002 (7) | 0.0009 (7) | 0.0028 (7) |
| C3 | 0.0234 (9) | 0.0166 (8) | 0.0234 (9) | −0.0005 (7) | −0.0012 (7) | 0.0016 (7) |
| C4 | 0.0285 (10) | 0.0197 (9) | 0.0193 (9) | −0.0018 (7) | −0.0009 (7) | −0.0006 (7) |
| C5 | 0.0242 (9) | 0.0195 (8) | 0.0193 (8) | −0.0005 (7) | −0.0021 (7) | 0.0024 (7) |
| C6 | 0.0207 (9) | 0.0154 (8) | 0.0218 (9) | 0.0007 (7) | −0.0020 (7) | 0.0027 (6) |
| C7 | 0.0223 (9) | 0.0159 (8) | 0.0211 (9) | 0.0008 (7) | 0.0016 (7) | −0.0007 (6) |
| C8 | 0.0257 (9) | 0.0173 (8) | 0.0223 (9) | 0.0005 (7) | 0.0025 (7) | −0.0010 (7) |
| C9 | 0.0215 (9) | 0.0167 (8) | 0.0207 (9) | −0.0021 (7) | −0.0003 (7) | −0.0006 (6) |
| C10 | 0.0244 (9) | 0.0159 (8) | 0.0221 (9) | 0.0002 (7) | 0.0000 (7) | −0.0026 (7) |
| C11 | 0.0244 (9) | 0.0181 (8) | 0.0211 (9) | −0.0005 (7) | 0.0016 (7) | −0.0021 (7) |
| C12 | 0.0221 (9) | 0.0186 (8) | 0.0179 (8) | −0.0029 (7) | −0.0007 (7) | 0.0012 (6) |
| C13 | 0.0237 (9) | 0.0150 (8) | 0.0231 (9) | −0.0004 (7) | 0.0006 (7) | −0.0003 (7) |
| C14 | 0.0247 (9) | 0.0178 (8) | 0.0201 (9) | −0.0004 (7) | 0.0017 (7) | −0.0018 (6) |
| C15 | 0.0294 (10) | 0.0231 (10) | 0.0217 (9) | −0.0028 (8) | 0.0011 (7) | −0.0002 (7) |
| C16 | 0.0290 (10) | 0.0182 (9) | 0.0254 (10) | 0.0013 (7) | −0.0015 (7) | 0.0030 (7) |
| N1 | 0.0225 (8) | 0.0161 (7) | 0.0227 (8) | 0.0004 (6) | −0.0004 (6) | 0.0013 (6) |
| N2 | 0.0251 (8) | 0.0164 (7) | 0.0212 (8) | −0.0003 (6) | −0.0007 (6) | −0.0006 (6) |
| N3 | 0.0490 (12) | 0.0242 (9) | 0.0304 (9) | −0.0092 (8) | 0.0046 (8) | −0.0008 (7) |
| O1 | 0.0307 (7) | 0.0186 (6) | 0.0203 (7) | 0.0020 (5) | 0.0018 (5) | 0.0023 (5) |
| Cl1 | 0.0386 (3) | 0.0223 (3) | 0.0191 (3) | −0.00365 (18) | −0.00068 (19) | 0.00226 (16) |
| Cl2 | 0.0343 (3) | 0.0185 (3) | 0.0213 (3) | −0.00454 (17) | 0.00074 (18) | −0.00278 (15) |
| C1—C2 | 1.382 (3) | C9—C14 | 1.392 (2) |
| C1—C6 | 1.395 (3) | C9—C10 | 1.403 (3) |
| C1—H1 | 0.9500 | C10—C11 | 1.378 (3) |
| C2—C3 | 1.399 (3) | C10—H10 | 0.9500 |
| C2—H2 | 0.9500 | C11—C12 | 1.397 (3) |
| C3—C4 | 1.394 (3) | C11—H11 | 0.9500 |
| C3—C15 | 1.441 (3) | C12—O1 | 1.367 (2) |
| C4—C5 | 1.392 (3) | C12—C13 | 1.391 (3) |
| C4—H4 | 0.9500 | C13—C14 | 1.393 (3) |
| C5—C6 | 1.388 (3) | C13—H13 | 0.9500 |
| C5—H5 | 0.9500 | C14—H14 | 0.9500 |
| C6—N1 | 1.433 (2) | C15—N3 | 1.149 (3) |
| C7—C8 | 1.359 (3) | C16—O1 | 1.430 (2) |
| C7—N2 | 1.416 (2) | C16—H16A | 0.9800 |
| C7—C9 | 1.479 (2) | C16—H16B | 0.9800 |
| C8—Cl2 | 1.7103 (19) | C16—H16C | 0.9800 |
| C8—Cl1 | 1.7196 (19) | N1—N2 | 1.257 (2) |
| C2—C1—C6 | 119.40 (17) | C10—C9—C7 | 121.08 (16) |
| C2—C1—H1 | 120.3 | C11—C10—C9 | 120.81 (17) |
| C6—C1—H1 | 120.3 | C11—C10—H10 | 119.6 |
| C1—C2—C3 | 119.55 (18) | C9—C10—H10 | 119.6 |
| C1—C2—H2 | 120.2 | C10—C11—C12 | 120.36 (17) |
| C3—C2—H2 | 120.2 | C10—C11—H11 | 119.8 |
| C4—C3—C2 | 121.20 (17) | C12—C11—H11 | 119.8 |
| C4—C3—C15 | 120.48 (17) | O1—C12—C13 | 124.46 (17) |
| C2—C3—C15 | 118.32 (17) | O1—C12—C11 | 115.79 (16) |
| C5—C4—C3 | 118.80 (17) | C13—C12—C11 | 119.74 (17) |
| C5—C4—H4 | 120.6 | C12—C13—C14 | 119.34 (17) |
| C3—C4—H4 | 120.6 | C12—C13—H13 | 120.3 |
| C6—C5—C4 | 119.96 (17) | C14—C13—H13 | 120.3 |
| C6—C5—H5 | 120.0 | C9—C14—C13 | 121.59 (17) |
| C4—C5—H5 | 120.0 | C9—C14—H14 | 119.2 |
| C5—C6—C1 | 121.04 (17) | C13—C14—H14 | 119.2 |
| C5—C6—N1 | 116.61 (16) | N3—C15—C3 | 177.3 (2) |
| C1—C6—N1 | 122.33 (16) | O1—C16—H16A | 109.5 |
| C8—C7—N2 | 111.75 (16) | O1—C16—H16B | 109.5 |
| C8—C7—C9 | 124.52 (17) | H16A—C16—H16B | 109.5 |
| N2—C7—C9 | 123.71 (15) | O1—C16—H16C | 109.5 |
| C7—C8—Cl2 | 124.62 (15) | H16A—C16—H16C | 109.5 |
| C7—C8—Cl1 | 122.71 (15) | H16B—C16—H16C | 109.5 |
| Cl2—C8—Cl1 | 112.66 (11) | N2—N1—C6 | 111.24 (15) |
| C14—C9—C10 | 118.16 (17) | N1—N2—C7 | 116.40 (15) |
| C14—C9—C7 | 120.73 (17) | C12—O1—C16 | 118.13 (15) |
| C6—C1—C2—C3 | 0.9 (3) | C14—C9—C10—C11 | 0.0 (3) |
| C1—C2—C3—C4 | −1.6 (3) | C7—C9—C10—C11 | 178.04 (17) |
| C1—C2—C3—C15 | 178.65 (18) | C9—C10—C11—C12 | 0.8 (3) |
| C2—C3—C4—C5 | 0.3 (3) | C10—C11—C12—O1 | 178.52 (17) |
| C15—C3—C4—C5 | −179.91 (18) | C10—C11—C12—C13 | −1.1 (3) |
| C3—C4—C5—C6 | 1.5 (3) | O1—C12—C13—C14 | −178.90 (17) |
| C4—C5—C6—C1 | −2.2 (3) | C11—C12—C13—C14 | 0.7 (3) |
| C4—C5—C6—N1 | 179.12 (16) | C10—C9—C14—C13 | −0.4 (3) |
| C2—C1—C6—C5 | 0.9 (3) | C7—C9—C14—C13 | −178.47 (17) |
| C2—C1—C6—N1 | 179.54 (17) | C12—C13—C14—C9 | 0.0 (3) |
| N2—C7—C8—Cl2 | 178.27 (14) | C5—C6—N1—N2 | −156.50 (17) |
| C9—C7—C8—Cl2 | −3.3 (3) | C1—C6—N1—N2 | 24.8 (2) |
| N2—C7—C8—Cl1 | −2.2 (2) | C6—N1—N2—C7 | −178.37 (15) |
| C9—C7—C8—Cl1 | 176.26 (14) | C8—C7—N2—N1 | −176.77 (17) |
| C8—C7—C9—C14 | −52.1 (3) | C9—C7—N2—N1 | 4.8 (3) |
| N2—C7—C9—C14 | 126.2 (2) | C13—C12—O1—C16 | −4.7 (3) |
| C8—C7—C9—C10 | 129.9 (2) | C11—C12—O1—C16 | 175.67 (16) |
| N2—C7—C9—C10 | −51.9 (3) |
| H··· | ||||
| C2—H2···O1i | 0.95 | 2.47 | 3.391 (2) | 165 |
| C16—H16 | 0.98 | 2.59 | 3.516 (3) | 158 |