| Literature DB >> 31417781 |
Ganna A Senchyk1, Harald Krautscheid2, Kostiantyn V Domasevitch1.
Abstract
The heterobifunctional organic ligand, 3-(1,2,4-triazol-4-yl)adamantane-1-carboxyl-ate (tr-ad-COO- ), was employed for the synthesis of the title silver(I) coordination polymer, {[Ag(C13H16N3O2)]·2H2O} n , crystallizing in the rare ortho-rhom-bic C2221 space group. Alternation of the double μ2-1,2,4-triazole and μ2-η2:η1-COO- (chelating, bridging mode) bridges between AgI cations supports the formation of sinusoidal coordination chains. The AgI centers possess a distorted {N2O3} square-pyramidal arrangement with τ5 = 0.30. The angular organic linkers connect the chains into a tetra-gonal framework with small channels along the c-axis direction occupied by water mol-ecules of crystallization, which are inter-linked via O-H⋯O hydrogen bonds with carboxyl-ate groups, leading to right- and left-handed helical dispositions.Entities:
Keywords: 1,2,4-triazolyl carboxylate; crystal structure; hydrogen bonding; silver(I) metal-organic framework
Year: 2019 PMID: 31417781 PMCID: PMC6690449 DOI: 10.1107/S2056989019009708
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1Fragment of the crystal structure of I. The independent part of the structure is indicated with black bonds and displacement ellipsoids are drawn at the 50% probability level. [Symmetry codes: (i) − x, − + y, − z, (ii) + x, − + y, z, (iii) x, −y, 1 − z]
Figure 2Projection on the bc plane showing the interconnection of sinusoidal AgI coordination chains by means of tr-ad-COO organic ligands into a three-dimensional framework.
Figure 3View of the channels along the c axis in the structure of I.
Selected geometric parameters (Å, °)
| Ag1—N2i | 2.291 (3) | Ag1—O2 | 2.571 (4) |
| Ag1—O1 | 2.437 (3) | Ag1—O2iii | 2.703 (4) |
| Ag1—N1ii | 2.442 (3) | ||
| N2i—Ag1—O1 | 125.93 (11) | N1ii—Ag1—O2 | 121.93 (12) |
| N2i—Ag1—N1ii | 92.12 (11) | N2i—Ag1—O2iii | 101.35 (11) |
| O1—Ag1—N1ii | 106.84 (11) | O1—Ag1—O2iii | 128.04 (11) |
| N2i—Ag1—O2 | 145.74 (12) | N1ii—Ag1—O2iii | 89.79 (11) |
| O1—Ag1—O2 | 51.95 (11) | O2—Ag1—O2iii | 77.22 (13) |
Symmetry codes: (i) ; (ii) ; (iii) .
Hydrogen-bond geometry (Å, °)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O3—H1 | 0.85 | 1.97 | 2.818 (5) | 171 |
| O4—H2 | 0.85 | 1.92 | 2.746 (10) | 163 |
| O4—H3 | 0.85 | 1.81 | 2.56 (2) | 147 |
| O4—H3 | 0.85 | 2.11 | 2.83 (3) | 143 |
| C1—H1⋯O1v | 0.94 | 2.43 | 3.336 (5) | 162 |
| C2—H2⋯O4vi | 0.94 | 2.58 | 3.516 (12) | 171 |
Symmetry codes: (iv) ; (v) ; (vi) .
Figure 4Hydrogen-bonding scheme between water molecules and COO− groups showing the formation of right-handed (A) and left-handed (B) helices. Adamantyl fragments are omitted for clarity. [Symmetry codes: (iv) + x, − y, 1 − z; (v) − + x, − y, 1 − z; (vi) 1 − x, y, − z; (vii) − x, − y, + z.]
Figure 5The packing of the right- and left-handed helices in the crystal structure of I (top view). Adamantyl fragments are omitted for clarity.
Experimental details
| Crystal data | |
| Chemical formula | [Ag(C13H16N3O2)]·2H2O |
|
| 390.19 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 213 |
|
| 12.9321 (9), 17.9056 (10), 12.9695 (9) |
|
| 3003.2 (3) |
|
| 8 |
| Radiation type | Mo |
| μ (mm−1) | 1.36 |
| Crystal size (mm) | 0.22 × 0.18 × 0.16 |
| Data collection | |
| Diffractometer | Stoe Image plate diffraction system |
| Absorption correction | Numerical [ |
|
| 0.649, 0.689 |
| No. of measured, independent and observed [ | 13596, 3617, 3135 |
|
| 0.028 |
| (sin θ/λ)max (Å−1) | 0.661 |
| Refinement | |
|
| 0.025, 0.058, 0.97 |
| No. of reflections | 3617 |
| No. of parameters | 204 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.89, −0.94 |
| Absolute structure | Flack |
| Absolute structure parameter | −0.060 (9) |
Computer programs: IPDS Software (Stoe & Cie, 2000 ▸), SHELXS97 (Sheldrick, 2008 ▸), SHELXL2014 (Sheldrick, 2015 ▸), DIAMOND (Brandenburg, 1999 ▸) and WinGX (Farrugia, 2012 ▸).
| [Ag(C13H16N3O2)]·2H2O | |
| Mo | |
| Orthorhombic, | Cell parameters from 13596 reflections |
| θ = 2.8–28.0° | |
| µ = 1.36 mm−1 | |
| Needle, colourless | |
| 0.22 × 0.18 × 0.16 mm | |
| Stoe Image plate diffraction system diffractometer | 3135 reflections with |
| φ oscillation scans | |
| Absorption correction: numerical [X-RED (Stoe & Cie, 2001) and X-SHAPE (Stoe & Cie, 1999)] | θmax = 28.0°, θmin = 2.8° |
| 13596 measured reflections | |
| 3617 independent reflections |
| Refinement on | Hydrogen site location: mixed |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max = 0.001 | |
| Δρmax = 0.89 e Å−3 | |
| 3617 reflections | Δρmin = −0.94 e Å−3 |
| 204 parameters | Absolute structure: Flack |
| 0 restraints | Absolute structure parameter: −0.060 (9) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| Ag1 | 0.39032 (3) | 0.01581 (2) | 0.35981 (2) | 0.04198 (10) | |
| O1 | 0.4141 (3) | 0.14822 (17) | 0.3962 (2) | 0.0474 (8) | |
| O2 | 0.3185 (3) | 0.09152 (19) | 0.5123 (3) | 0.0581 (9) | |
| N1 | 0.0616 (2) | 0.45845 (17) | 0.3648 (3) | 0.0318 (6) | |
| N2 | 0.1451 (2) | 0.46474 (17) | 0.2982 (2) | 0.0316 (7) | |
| N3 | 0.1946 (2) | 0.39903 (16) | 0.4325 (2) | 0.0231 (6) | |
| C1 | 0.0930 (3) | 0.4190 (2) | 0.4435 (3) | 0.0282 (8) | |
| H1 | 0.0514 | 0.4060 | 0.5001 | 0.034* | |
| C2 | 0.2230 (3) | 0.4290 (2) | 0.3398 (2) | 0.0276 (7) | |
| H2 | 0.2890 | 0.4245 | 0.3102 | 0.033* | |
| C3 | 0.3583 (3) | 0.1495 (2) | 0.4758 (3) | 0.0339 (9) | |
| C4 | 0.2574 (2) | 0.3521 (2) | 0.5055 (3) | 0.0219 (7) | |
| C5 | 0.2762 (3) | 0.27539 (19) | 0.4550 (3) | 0.0234 (7) | |
| H5A | 0.3139 | 0.2819 | 0.3900 | 0.028* | |
| H5B | 0.2098 | 0.2515 | 0.4396 | 0.028* | |
| C6 | 0.3398 (3) | 0.2253 (2) | 0.5293 (3) | 0.0260 (7) | |
| C7 | 0.2807 (3) | 0.2174 (2) | 0.6319 (3) | 0.0333 (8) | |
| H7A | 0.2140 | 0.1929 | 0.6196 | 0.040* | |
| H7B | 0.3206 | 0.1862 | 0.6796 | 0.040* | |
| C8 | 0.2626 (3) | 0.2948 (2) | 0.6802 (3) | 0.0333 (9) | |
| H8 | 0.2247 | 0.2887 | 0.7460 | 0.040* | |
| C9 | 0.1977 (3) | 0.3427 (2) | 0.6064 (3) | 0.0278 (8) | |
| H9A | 0.1311 | 0.3184 | 0.5931 | 0.033* | |
| H9B | 0.1843 | 0.3917 | 0.6374 | 0.033* | |
| C10 | 0.3616 (3) | 0.3907 (2) | 0.5253 (3) | 0.0287 (8) | |
| H10A | 0.3502 | 0.4401 | 0.5556 | 0.034* | |
| H10B | 0.3990 | 0.3970 | 0.4601 | 0.034* | |
| C11 | 0.4256 (3) | 0.3416 (2) | 0.5999 (3) | 0.0326 (8) | |
| H11 | 0.4930 | 0.3659 | 0.6135 | 0.039* | |
| C12 | 0.4439 (3) | 0.2646 (2) | 0.5505 (3) | 0.0294 (8) | |
| H12A | 0.4859 | 0.2338 | 0.5968 | 0.035* | |
| H12B | 0.4819 | 0.2707 | 0.4857 | 0.035* | |
| C13 | 0.3663 (3) | 0.3327 (2) | 0.7016 (3) | 0.0384 (10) | |
| H13A | 0.4069 | 0.3025 | 0.7499 | 0.046* | |
| H13B | 0.3547 | 0.3818 | 0.7328 | 0.046* | |
| O3 | 0.5000 | 0.2468 (3) | 0.2500 | 0.0630 (13) | |
| H1W | 0.4787 | 0.2190 | 0.2988 | 0.094* | |
| O4 | 0.5231 (6) | 0.3992 (4) | 0.2479 (18) | 0.068 (3) | 0.5 |
| H2W | 0.5153 | 0.3530 | 0.2348 | 0.102* | 0.5 |
| H3W | 0.5724 | 0.4038 | 0.2909 | 0.102* | 0.5 |
| O5A | 0.1318 (13) | 0.0398 (10) | 0.6097 (11) | 0.096 (4) | 0.5 |
| O5B | 0.1073 (12) | 0.0560 (11) | 0.5604 (12) | 0.100 (5) | 0.5 |
| Ag1 | 0.04963 (17) | 0.03609 (16) | 0.04023 (15) | 0.01122 (15) | −0.00959 (15) | −0.01749 (13) |
| O1 | 0.063 (2) | 0.0348 (16) | 0.0446 (17) | 0.0145 (14) | −0.0012 (14) | −0.0141 (12) |
| O2 | 0.064 (2) | 0.0231 (18) | 0.087 (3) | 0.0013 (17) | 0.005 (2) | −0.0047 (15) |
| N1 | 0.0325 (15) | 0.0318 (15) | 0.0311 (14) | 0.0098 (12) | −0.0019 (15) | −0.0012 (14) |
| N2 | 0.0379 (17) | 0.0292 (17) | 0.0275 (14) | 0.0059 (13) | −0.0028 (12) | 0.0018 (12) |
| N3 | 0.0255 (15) | 0.0201 (15) | 0.0239 (14) | 0.0042 (12) | −0.0023 (11) | 0.0004 (11) |
| C1 | 0.0258 (19) | 0.0321 (19) | 0.0266 (17) | 0.0057 (15) | 0.0039 (14) | 0.0016 (13) |
| C2 | 0.0290 (17) | 0.0307 (19) | 0.0231 (17) | 0.0050 (15) | 0.0002 (13) | 0.0037 (13) |
| C3 | 0.037 (2) | 0.019 (2) | 0.045 (2) | 0.0076 (16) | −0.0134 (16) | −0.0061 (17) |
| C4 | 0.0260 (15) | 0.022 (2) | 0.0176 (13) | 0.0035 (15) | −0.0030 (14) | 0.0009 (11) |
| C5 | 0.0261 (16) | 0.0211 (17) | 0.0229 (15) | 0.0034 (14) | −0.0023 (13) | −0.0028 (13) |
| C6 | 0.0317 (18) | 0.0184 (17) | 0.0280 (17) | 0.0040 (15) | −0.0026 (13) | −0.0024 (13) |
| C7 | 0.0394 (18) | 0.0290 (19) | 0.0315 (18) | 0.0046 (15) | 0.0011 (17) | 0.0080 (16) |
| C8 | 0.042 (2) | 0.039 (2) | 0.0196 (15) | 0.0089 (17) | 0.0015 (15) | 0.0045 (14) |
| C9 | 0.0321 (19) | 0.0278 (19) | 0.0235 (16) | 0.0076 (15) | 0.0039 (13) | 0.0010 (13) |
| C10 | 0.0305 (19) | 0.0208 (19) | 0.0349 (19) | −0.0023 (14) | −0.0063 (13) | −0.0024 (15) |
| C11 | 0.0323 (19) | 0.0275 (19) | 0.0380 (19) | 0.0011 (15) | −0.0147 (15) | −0.0050 (15) |
| C12 | 0.0272 (18) | 0.029 (2) | 0.0321 (19) | 0.0056 (16) | −0.0059 (14) | −0.0003 (15) |
| C13 | 0.052 (3) | 0.037 (2) | 0.0266 (17) | 0.0087 (18) | −0.0121 (16) | −0.0052 (15) |
| O3 | 0.067 (3) | 0.060 (3) | 0.062 (3) | 0.000 | 0.001 (3) | 0.000 |
| O4 | 0.051 (9) | 0.068 (4) | 0.085 (5) | −0.008 (4) | −0.018 (10) | 0.000 (6) |
| O5A | 0.089 (10) | 0.109 (9) | 0.091 (10) | −0.005 (7) | 0.009 (7) | −0.018 (8) |
| O5B | 0.060 (7) | 0.128 (12) | 0.110 (11) | 0.003 (8) | −0.005 (8) | −0.045 (10) |
| Ag1—N2i | 2.291 (3) | C6—C12 | 1.544 (5) |
| Ag1—O1 | 2.437 (3) | C7—C8 | 1.538 (5) |
| Ag1—N1ii | 2.442 (3) | C7—H7A | 0.9800 |
| Ag1—O2 | 2.571 (4) | C7—H7B | 0.9800 |
| Ag1—O2iii | 2.703 (4) | C8—C13 | 1.529 (6) |
| O1—C3 | 1.259 (5) | C8—C9 | 1.536 (5) |
| O2—C3 | 1.251 (5) | C8—H8 | 0.9900 |
| N1—C1 | 1.305 (5) | C9—H9A | 0.9800 |
| N1—N2 | 1.387 (4) | C9—H9B | 0.9800 |
| N1—Ag1iv | 2.442 (3) | C10—C11 | 1.548 (5) |
| N2—C2 | 1.310 (5) | C10—H10A | 0.9800 |
| N2—Ag1v | 2.291 (3) | C10—H10B | 0.9800 |
| N3—C2 | 1.366 (4) | C11—C13 | 1.533 (6) |
| N3—C1 | 1.369 (5) | C11—C12 | 1.538 (5) |
| N3—C4 | 1.505 (4) | C11—H11 | 0.9900 |
| C1—H1 | 0.9400 | C12—H12A | 0.9800 |
| C2—H2 | 0.9400 | C12—H12B | 0.9800 |
| C3—C6 | 1.544 (5) | C13—H13A | 0.9800 |
| C4—C9 | 1.530 (5) | C13—H13B | 0.9800 |
| C4—C10 | 1.535 (5) | O3—H1W | 0.8500 |
| C4—C5 | 1.541 (5) | O4—O4vi | 0.601 (16) |
| C5—C6 | 1.552 (5) | O4—H2W | 0.8500 |
| C5—H5A | 0.9800 | O4—H3W | 0.8500 |
| C5—H5B | 0.9800 | O5A—O5B | 0.770 (16) |
| C6—C7 | 1.542 (5) | ||
| N2i—Ag1—O1 | 125.93 (11) | C3—C6—C5 | 108.1 (3) |
| N2i—Ag1—N1ii | 92.12 (11) | C8—C7—C6 | 110.1 (3) |
| O1—Ag1—N1ii | 106.84 (11) | C8—C7—H7A | 109.6 |
| N2i—Ag1—O2 | 145.74 (12) | C6—C7—H7A | 109.6 |
| O1—Ag1—O2 | 51.95 (11) | C8—C7—H7B | 109.6 |
| N1ii—Ag1—O2 | 121.93 (12) | C6—C7—H7B | 109.6 |
| N2i—Ag1—O2iii | 101.35 (11) | H7A—C7—H7B | 108.2 |
| O1—Ag1—O2iii | 128.04 (11) | C13—C8—C9 | 110.1 (3) |
| N1ii—Ag1—O2iii | 89.79 (11) | C13—C8—C7 | 110.0 (3) |
| O2—Ag1—O2iii | 77.22 (13) | C9—C8—C7 | 109.5 (3) |
| C3—O1—Ag1 | 96.0 (3) | C13—C8—H8 | 109.1 |
| C3—O2—Ag1 | 89.9 (3) | C9—C8—H8 | 109.1 |
| C1—N1—N2 | 106.7 (3) | C7—C8—H8 | 109.1 |
| C1—N1—Ag1iv | 122.0 (2) | C4—C9—C8 | 108.5 (3) |
| N2—N1—Ag1iv | 130.9 (2) | C4—C9—H9A | 110.0 |
| C2—N2—N1 | 107.6 (3) | C8—C9—H9A | 110.0 |
| C2—N2—Ag1v | 135.8 (2) | C4—C9—H9B | 110.0 |
| N1—N2—Ag1v | 115.7 (2) | C8—C9—H9B | 110.0 |
| C2—N3—C1 | 104.3 (3) | H9A—C9—H9B | 108.4 |
| C2—N3—C4 | 128.9 (3) | C4—C10—C11 | 108.6 (3) |
| C1—N3—C4 | 126.8 (3) | C4—C10—H10A | 110.0 |
| N1—C1—N3 | 111.0 (3) | C11—C10—H10A | 110.0 |
| N1—C1—H1 | 124.5 | C4—C10—H10B | 110.0 |
| N3—C1—H1 | 124.5 | C11—C10—H10B | 110.0 |
| N2—C2—N3 | 110.3 (3) | H10A—C10—H10B | 108.4 |
| N2—C2—H2 | 124.8 | C13—C11—C12 | 110.0 (3) |
| N3—C2—H2 | 124.8 | C13—C11—C10 | 109.2 (3) |
| O2—C3—O1 | 122.1 (4) | C12—C11—C10 | 109.3 (3) |
| O2—C3—C6 | 119.7 (4) | C13—C11—H11 | 109.4 |
| O1—C3—C6 | 118.2 (4) | C12—C11—H11 | 109.4 |
| N3—C4—C9 | 109.1 (3) | C10—C11—H11 | 109.4 |
| N3—C4—C10 | 109.1 (3) | C11—C12—C6 | 110.4 (3) |
| C9—C4—C10 | 110.5 (3) | C11—C12—H12A | 109.6 |
| N3—C4—C5 | 108.4 (3) | C6—C12—H12A | 109.6 |
| C9—C4—C5 | 110.2 (3) | C11—C12—H12B | 109.6 |
| C10—C4—C5 | 109.5 (3) | C6—C12—H12B | 109.6 |
| C4—C5—C6 | 109.5 (3) | H12A—C12—H12B | 108.1 |
| C4—C5—H5A | 109.8 | C8—C13—C11 | 109.2 (3) |
| C6—C5—H5A | 109.8 | C8—C13—H13A | 109.8 |
| C4—C5—H5B | 109.8 | C11—C13—H13A | 109.8 |
| C6—C5—H5B | 109.8 | C8—C13—H13B | 109.8 |
| H5A—C5—H5B | 108.2 | C11—C13—H13B | 109.8 |
| C7—C6—C12 | 108.7 (3) | H13A—C13—H13B | 108.3 |
| C7—C6—C3 | 112.6 (3) | O4vi—O4—H2W | 84.2 |
| C12—C6—C3 | 110.2 (3) | O4vi—O4—H3W | 133.4 |
| C7—C6—C5 | 109.1 (3) | H2W—O4—H3W | 108.4 |
| C12—C6—C5 | 108.1 (3) | ||
| C1—N1—N2—C2 | −0.1 (4) | O2—C3—C6—C5 | −114.4 (4) |
| Ag1iv—N1—N2—C2 | 173.7 (3) | O1—C3—C6—C5 | 65.8 (4) |
| C1—N1—N2—Ag1v | 171.1 (2) | C4—C5—C6—C7 | 58.0 (4) |
| Ag1iv—N1—N2—Ag1v | −15.1 (4) | C4—C5—C6—C12 | −60.0 (4) |
| N2—N1—C1—N3 | 0.4 (4) | C4—C5—C6—C3 | −179.3 (3) |
| Ag1iv—N1—C1—N3 | −174.1 (2) | C12—C6—C7—C8 | 58.8 (4) |
| C2—N3—C1—N1 | −0.5 (4) | C3—C6—C7—C8 | −178.8 (3) |
| C4—N3—C1—N1 | −178.4 (3) | C5—C6—C7—C8 | −58.8 (4) |
| N1—N2—C2—N3 | −0.2 (4) | C6—C7—C8—C13 | −60.3 (4) |
| Ag1v—N2—C2—N3 | −168.8 (3) | C6—C7—C8—C9 | 60.7 (4) |
| C1—N3—C2—N2 | 0.4 (4) | N3—C4—C9—C8 | 180.0 (3) |
| C4—N3—C2—N2 | 178.3 (3) | C10—C4—C9—C8 | −60.1 (4) |
| Ag1—O2—C3—O1 | −4.0 (4) | C5—C4—C9—C8 | 61.1 (4) |
| Ag1—O2—C3—C6 | 176.3 (3) | C13—C8—C9—C4 | 59.9 (4) |
| Ag1—O1—C3—O2 | 4.2 (4) | C7—C8—C9—C4 | −61.1 (4) |
| Ag1—O1—C3—C6 | −176.0 (3) | N3—C4—C10—C11 | −179.7 (3) |
| C2—N3—C4—C9 | 170.9 (3) | C9—C4—C10—C11 | 60.4 (4) |
| C1—N3—C4—C9 | −11.7 (5) | C5—C4—C10—C11 | −61.2 (4) |
| C2—N3—C4—C10 | 50.1 (5) | C4—C10—C11—C13 | −60.1 (4) |
| C1—N3—C4—C10 | −132.5 (3) | C4—C10—C11—C12 | 60.4 (4) |
| C2—N3—C4—C5 | −69.0 (4) | C13—C11—C12—C6 | 59.3 (4) |
| C1—N3—C4—C5 | 108.3 (4) | C10—C11—C12—C6 | −60.6 (4) |
| N3—C4—C5—C6 | −179.3 (3) | C7—C6—C12—C11 | −58.4 (4) |
| C9—C4—C5—C6 | −60.0 (3) | C3—C6—C12—C11 | 177.8 (3) |
| C10—C4—C5—C6 | 61.8 (4) | C5—C6—C12—C11 | 59.8 (4) |
| O2—C3—C6—C7 | 6.2 (5) | C9—C8—C13—C11 | −60.8 (4) |
| O1—C3—C6—C7 | −173.6 (3) | C7—C8—C13—C11 | 59.9 (4) |
| O2—C3—C6—C12 | 127.7 (4) | C12—C11—C13—C8 | −59.4 (4) |
| O1—C3—C6—C12 | −52.1 (4) | C10—C11—C13—C8 | 60.5 (4) |
| H··· | ||||
| O3—H1 | 0.85 | 1.97 | 2.818 (5) | 171 |
| O4—H2 | 0.85 | 1.92 | 2.746 (10) | 163 |
| O4—H3 | 0.85 | 1.81 | 2.56 (2) | 147 |
| O4—H3 | 0.85 | 2.11 | 2.83 (3) | 143 |
| C1—H1···O1viii | 0.94 | 2.43 | 3.336 (5) | 162 |
| C2—H2···O4vi | 0.94 | 2.58 | 3.516 (12) | 171 |