Literature DB >> 31400093

Acute Vector-Borne Viral Infection: Zika and MinION Surveillance.

Jaqueline Goes de Jesus1, Marta Giovanetti2,3, Nuno Rodrigues Faria4, Luiz Carlos Junior Alcantara2,3.   

Abstract

The MinION sequencer was launched by the Oxford Nanopore Technologies start-up as a disruptive technology for genome sequencing based on single-molecule synthesis. Its characteristics as a portable device, low cost, and simple library preparation have made it a good candidate for field researchers. MinION has been used to sequence a number of microorganisms, such as bacteria, viruses, and fungi. Based on the experience that characterized the Ebola virus genetic diversity in Guinea during the 2014-2015 outbreak, the ZiBRA (Zika in Brazil Real-time Analysis) project aimed to sequence a large number of Zika virus genomes during a mobile laboratory trip in northeast Brazil to provide important epidemiological information about the spread of this disease in this country. In response to the positive and rapid results obtained by the ZiBRA project, the Brazilian Ministry of Health and many leading institutions, such as the Pan American Health Organization and WHO, have shown interest in expanding the strategy used in this project to other countries dealing with arbovirus infection. *This article is part of a curated collection.

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Year:  2019        PMID: 31400093     DOI: 10.1128/microbiolspec.AME-0008-2019

Source DB:  PubMed          Journal:  Microbiol Spectr        ISSN: 2165-0497


  4 in total

1.  DNA Thermo-Protection Facilitates Whole-Genome Sequencing of Mycobacteria Direct from Clinical Samples.

Authors:  Sophie George; Yifei Xu; Gillian Rodger; Marcus Morgan; Nicholas D Sanderson; Sarah J Hoosdally; Samantha Thulborn; Esther Robinson; Priti Rathod; A Sarah Walker; Timothy E A Peto; Derrick W Crook; Kate E Dingle
Journal:  J Clin Microbiol       Date:  2020-09-22       Impact factor: 5.948

2.  MinoTour, real-time monitoring and analysis for nanopore sequencers.

Authors:  Rory Munro; Roberto Santos; Alexander Payne; Teri Forey; Solomon Osei; Nadine Holmes; Matthew Loose
Journal:  Bioinformatics       Date:  2021-11-15       Impact factor: 6.937

3.  Comparing Long-Read Assemblers to Explore the Potential of a Sustainable Low-Cost, Low-Infrastructure Approach to Sequence Antimicrobial Resistant Bacteria With Oxford Nanopore Sequencing.

Authors:  Ian Boostrom; Edward A R Portal; Owen B Spiller; Timothy R Walsh; Kirsty Sands
Journal:  Front Microbiol       Date:  2022-03-03       Impact factor: 5.640

4.  Whole-genome sequencing and genetic diversity of severe fever with thrombocytopenia syndrome virus using multiplex PCR-based nanopore sequencing, Republic of Korea.

Authors:  Jingyeong Lee; Kyungmin Park; Jongwoo Kim; Seung-Ho Lee; Geum-Young Lee; Seungchan Cho; Heung-Chul Kim; Terry A Klein; Jeong-Ah Kim; Jeewan Choi; Juwan Park; Dong-Hyun Song; Se Hun Gu; Hyeongseok Yun; Jung-Eun Kim; Daesang Lee; Gyeung Haeng Hur; Seong Tae Jeong; Il-Ung Hwang; Won-Keun Kim; Jin-Won Song
Journal:  PLoS Negl Trop Dis       Date:  2022-09-12
  4 in total

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