Literature DB >> 31398337

Tumor Microbiome Diversity and Composition Influence Pancreatic Cancer Outcomes.

Erick Riquelme1, Yu Zhang2, Liangliang Zhang3, Maria Montiel2, Michelle Zoltan2, Wenli Dong4, Pompeyo Quesada2, Ismet Sahin5, Vidhi Chandra2, Anthony San Lucas6, Paul Scheet6, Hanwen Xu2, Samir M Hanash7, Lei Feng4, Jared K Burks8, Kim-Anh Do4, Christine B Peterson4, Deborah Nejman9, Ching-Wei D Tzeng10, Michael P Kim10, Cynthia L Sears11, Nadim Ajami12, Joseph Petrosino12, Laura D Wood13, Anirban Maitra14, Ravid Straussman9, Matthew Katz10, James Robert White15, Robert Jenq16, Jennifer Wargo17, Florencia McAllister18.   

Abstract

Most patients diagnosed with resected pancreatic adenocarcinoma (PDAC) survive less than 5 years, but a minor subset survives longer. Here, we dissect the role of the tumor microbiota and the immune system in influencing long-term survival. Using 16S rRNA gene sequencing, we analyzed the tumor microbiome composition in PDAC patients with short-term survival (STS) and long-term survival (LTS). We found higher alpha-diversity in the tumor microbiome of LTS patients and identified an intra-tumoral microbiome signature (Pseudoxanthomonas-Streptomyces-Saccharopolyspora-Bacillus clausii) highly predictive of long-term survivorship in both discovery and validation cohorts. Through human-into-mice fecal microbiota transplantation (FMT) experiments from STS, LTS, or control donors, we were able to differentially modulate the tumor microbiome and affect tumor growth as well as tumor immune infiltration. Our study demonstrates that PDAC microbiome composition, which cross-talks to the gut microbiome, influences the host immune response and natural history of the disease. Published by Elsevier Inc.

Entities:  

Keywords:  CD8; PDAC; antibiotics; cancer survivors; fecal microbial transplants; immunoactivation; microbiota; pancreatic cancer; tumor microbiome

Mesh:

Substances:

Year:  2019        PMID: 31398337      PMCID: PMC7288240          DOI: 10.1016/j.cell.2019.07.008

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  56 in total

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Journal:  Nature       Date:  2017-11-08       Impact factor: 49.962

3.  The Pancreatic Cancer Microbiome Promotes Oncogenesis by Induction of Innate and Adaptive Immune Suppression.

Authors:  Smruti Pushalkar; Mautin Hundeyin; Donnele Daley; Constantinos P Zambirinis; Emma Kurz; Ankita Mishra; Navyatha Mohan; Berk Aykut; Mykhaylo Usyk; Luisana E Torres; Gregor Werba; Kevin Zhang; Yuqi Guo; Qianhao Li; Neha Akkad; Sarah Lall; Benjamin Wadowski; Johana Gutierrez; Juan Andres Kochen Rossi; Jeremy W Herzog; Brian Diskin; Alejandro Torres-Hernandez; Josh Leinwand; Wei Wang; Pardeep S Taunk; Shivraj Savadkar; Malvin Janal; Anjana Saxena; Xin Li; Deirdre Cohen; R Balfour Sartor; Deepak Saxena; George Miller
Journal:  Cancer Discov       Date:  2018-03-22       Impact factor: 39.397

4.  Cancer treatment and survivorship statistics, 2016.

Authors:  Kimberly D Miller; Rebecca L Siegel; Chun Chieh Lin; Angela B Mariotto; Joan L Kramer; Julia H Rowland; Kevin D Stein; Rick Alteri; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2016-06-02       Impact factor: 508.702

5.  Treg induction by a rationally selected mixture of Clostridia strains from the human microbiota.

Authors:  Koji Atarashi; Takeshi Tanoue; Kenshiro Oshima; Wataru Suda; Yuji Nagano; Hiroyoshi Nishikawa; Shinji Fukuda; Takuro Saito; Seiko Narushima; Koji Hase; Sangwan Kim; Joëlle V Fritz; Paul Wilmes; Satoshi Ueha; Kouji Matsushima; Hiroshi Ohno; Bernat Olle; Shimon Sakaguchi; Tadatsugu Taniguchi; Hidetoshi Morita; Masahira Hattori; Kenya Honda
Journal:  Nature       Date:  2013-07-10       Impact factor: 49.962

6.  Structure, function and diversity of the healthy human microbiome.

Authors: 
Journal:  Nature       Date:  2012-06-13       Impact factor: 49.962

7.  UCHIME improves sensitivity and speed of chimera detection.

Authors:  Robert C Edgar; Brian J Haas; Jose C Clemente; Christopher Quince; Rob Knight
Journal:  Bioinformatics       Date:  2011-06-23       Impact factor: 6.937

8.  Differential expression analysis for sequence count data.

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Journal:  Genome Biol       Date:  2010-10-27       Impact factor: 13.583

9.  High-resolution bacterial 16S rRNA gene profile meta-analysis and biofilm status reveal common colorectal cancer consortia.

Authors:  Julia L Drewes; James R White; Christine M Dejea; Payam Fathi; Thevambiga Iyadorai; Jamuna Vadivelu; April C Roslani; Elizabeth C Wick; Emmanuel F Mongodin; Mun Fai Loke; Kumar Thulasi; Han Ming Gan; Khean Lee Goh; Hoong Yin Chong; Sandip Kumar; Jane W Wanyiri; Cynthia L Sears
Journal:  NPJ Biofilms Microbiomes       Date:  2017-11-29       Impact factor: 7.290

10.  Genomic landscape associated with potential response to anti-CTLA-4 treatment in cancers.

Authors:  Chan-Young Ock; Jun-Eul Hwang; Bhumsuk Keam; Sang-Bae Kim; Jae-Jun Shim; Hee-Jin Jang; Sarang Park; Bo Hwa Sohn; Minse Cha; Jaffer A Ajani; Scott Kopetz; Keun-Wook Lee; Tae Min Kim; Dae Seog Heo; Ju-Seog Lee
Journal:  Nat Commun       Date:  2017-10-19       Impact factor: 14.919

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  262 in total

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3.  Can we harness the microbiota to enhance the efficacy of cancer immunotherapy?

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Review 5.  Microbiota-Propelled T Helper 17 Cells in Inflammatory Diseases and Cancer.

Authors:  Matteo Bellone; Arianna Brevi; Samuel Huber
Journal:  Microbiol Mol Biol Rev       Date:  2020-03-04       Impact factor: 11.056

6.  AI finds microbial signatures in tumours and blood across cancer types.

Authors:  Nadim J Ajami; Jennifer A Wargo
Journal:  Nature       Date:  2020-03       Impact factor: 49.962

7.  Gut microbiome, antibiotic use, and immunotherapy responsiveness in cancer.

Authors:  Jarred P Reed; Suzanne Devkota; Robert A Figlin
Journal:  Ann Transl Med       Date:  2019-12

8.  aPCoA: covariate adjusted principal coordinates analysis.

Authors:  Yushu Shi; Liangliang Zhang; Kim-Anh Do; Christine B Peterson; Robert R Jenq
Journal:  Bioinformatics       Date:  2020-07-01       Impact factor: 6.937

Review 9.  Gut Microbiome Modulates Response to Cancer Immunotherapy.

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Journal:  Dig Dis Sci       Date:  2020-03       Impact factor: 3.199

10.  STING Sensing of Murine Cytomegalovirus Alters the Tumor Microenvironment to Promote Antitumor Immunity.

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Journal:  J Immunol       Date:  2020-04-13       Impact factor: 5.422

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