Literature DB >> 31396399

Primary coenzyme Q10 deficiency-7: expanded phenotypic spectrum and a founder mutation in southern Chinese.

Mullin Ho-Chung Yu1, Mandy Ho-Yin Tsang1, Sophie Lai1, Matthew Sai-Pong Ho1, Donald M L Tse2, Brooke Willis1, Anna Ka-Yee Kwong1, Yen-Yin Chou3, Shuan-Pei Lin4, Catarina M Quinzii5, Wuh-Liang Hwu6, Yin-Hsiu Chien6, Pao-Lin Kuo7, Victor Chi-Man Chan8, Cheung Tsoi9, Shuk-Ching Chong10, Richard J T Rodenburg11, Jan Smeitink11, Christopher Chun-Yu Mak1, Kit-San Yeung1, Jasmine Lee-Fong Fung1, Wendy Lam2, Joannie Hui12, Ni-Chung Lee6, Cheuk-Wing Fung1, Brian Hon-Yin Chung1.   

Abstract

Primary coenzyme Q10 deficiency-7 (COQ10D7) is a rare mitochondrial disease caused by biallelic mutations in COQ4. Here we report the largest cohort of COQ10D7 to date, with 11 southern Chinese patients confirmed with biallelic COQ4 mutations. Five of them have the classical neonatal-onset encephalo-cardiomyopathy, while the others have infantile onset with more heterogeneous clinical presentations. We also identify a founder mutation COQ4 (NM_016035.5): c.370G>A, p.(Gly124Ser) for COQ10D7, suggesting a higher chance of occurrence in the southern Chinese. This study helps improve understanding of the clinical spectrum of this disorder.

Entities:  

Keywords:  Disease genetics; Diseases

Year:  2019        PMID: 31396399      PMCID: PMC6683205          DOI: 10.1038/s41525-019-0091-x

Source DB:  PubMed          Journal:  NPJ Genom Med        ISSN: 2056-7944            Impact factor:   8.617


Introduction

Coenzyme Q10 (CoQ), also known as ubiquinone, is crucial for the function of mitochondrial respiratory chain complexes. Currently, the pathway of CoQ biosynthesis is known to involve at least 18 proteins. Primary CoQ deficiencies in humans involve genetic mutations in COQ2, PDSS1, PDSS2, COQ8A, COQ9, COQ6, COQ4, or COQ7.[1] The primary CoQ10 deficiency-7 (COQ10D7, MIM: 616276) is caused by autosomal-recessive mutations in COQ4. COQ4 is hypothesized to take part in stabilizing the CoQ complex.[2] To date, biallelic COQ4 mutations have been described in 16 patients from 11 unrelated families. They were reported in two case series (with five to six cases each) and three case reports. The patients described had common features of cardiomyopathy, encephalopathy, lactic acidosis often with a neonatal onset, and death in the neonatal or infantile period.[2-4] Two siblings of childhood onset presenting with spinocerebellar ataxia and stroke-like episodes[5] and two Chinese siblings with neonatal onset of dystonia, seizures, lactic acidosis, and cerebellar atrophy were described in recent case reports.[6] In this report, we have 11 patients (4 males and 7 females) from 9 unrelated families who were managed by the Medical Genetics division of the Department of Paediatrics and Adolescent Medicine at the University of Hong Kong and the Department of Medical Genetics and Pediatrics at the National Taiwan University Hospital in the period of 2014–2018. They presented with two overlapping phenotypes: the classical neonatal-onset encephalo-cardiomyopathy and infantile-onset encephalopathy with or without cardiomyopathy. They were diagnosed as COQ10D7 due to homozygous or compound heterozygous COQ4 mutations. All genetic diagnoses were made by whole-exome sequencing (WES) except Patient 4, Patient 5, and Patient 11 due to their known family history and recognizable features of COQ10D7. More importantly, we have identified a Chinese-specific COQ4 founder mutation in 10 subjects, 5 of whom are homozygous for that mutation.

Case reports

The study was approved by the institutional review board of the University of Hong Kong/Hospital Authority Hong Kong West Cluster (UW12-211) and the National Taiwan University Hospital (201703073RINB). Written informed consent was obtained from subjects or their parents. A summary of the clinical, biochemical, and radiological characteristics of the 11 patients with COQ4 mutations identified is presented in Table 1. Patients 1–5 had the classical neonatal-onset phenotype described by Brea-Calvo et al. and Chung et al.,[2,3] whereas Patients 6–11 had later onset and more heterogeneous features. The frequency of distinct phenotypes compared with previous studies is summarized in Table 2. The corresponding MRI (magnetic resonance imaging) images are presented in Fig. 1. The pedigrees of the nine families are presented in Fig. 2.
Table 1

Summary of characteristics of 11 patients with COQ4 mutations in this study and previously reported cases

Phenotype groupNeonatal-onset encephalo-cardiomyopathy
ReferenceThis studyBrea-Calvo et al.[2]
Family 1Family 3
Subject12345S1S2S3S4S5
SexMaleMaleFemaleFemaleFemaleMaleFemaleFemaleFemaleMale
Age at presentationNeonatalNeonatalNeonatalAt birth2 monthsNeonatalNeonatalNeonatalNeonatalInfantile
Last follow-upPassed away at 8 months (redirection of care)Passed away at 2.5 days (unknown cause)9 monthsNow 4 years 6 monthsPassed away at 1 year 1 month (respiratory failure)Passed away at 4 h after birthPassed away at 1 dayPassed away at 3 daysPassed away at 2 daysStill alive at age 18 years
CoQ4 mutationc.370G>A/c.402+1G>Cc.370G>A/c.402+1G>CHomozygous c.370G>Ac.370G>A/c.402+1G>Cc.370G>A/c.402+1G>CHomozygous c.433C>Gc.421C>T/c.718C>Tc.155T>C/c.521_523delCCAc.155T>C/c.521_523delCCAHomozygous c.190C>T
Hypotonia××××
Seizures×××
Cardiomyopathy××××
Other presented problemsSevere GDD, cortical visual impairment, bilateral severe to profound hearing impairment, myopathyApneaSevere GDDSevere DD, poor oromotor functionDD

Areflexia

Acrocyanosis

Respiratory failure

Bradycardia

Severe IUGR

Respiratory failure

Respiratory distress syndrome

Distal arthrogryposis

Neonatal respiratory distress

Progressive motor deterioration after 10 months old, spastic ataxic gait at age 3 years

Wheelchair bound by age 6 years

Progressive swallowing difficulties requiring gastrostomy

Cognitive deterioration

Polyneuropathy with slow conduction

Progressive scoliosis

Timing of MRI or other imaging3 weeks and 3 months7 weeks7 days and 9 monthsUSG brain at birthUSG brain at birthAge 12 and 17 years
MRI brain or other imaging findingsSymmetrical T1 and T2 hyperintensity with restricted diffusion at bilateral lentiform nuclei, subsequently infarcts with cystic changes. Foci of restricted diffusion also at bilateral frontal white matter. MRS: raised lactate peaks at bilateral basal ganglia and cerebral white matter. Mild cerebellar hypoplasiaMild cerebellar hypoplasia, mild thinning of corpus callosumNeonatal stage: symmetrical T1 hyperintensity at bilateral basal ganglia, mild cerebellar hypoplasia, later with generalized progressive cerebellar and cerebral atrophy with diffuse white matter loss, thinning of corpus callosum. Cystic changes within cerebral white matter, bilateral basal ganglia, thalami. MRS: raised lactate peaks at bilateral basal ganglia

USG brain: cerebellar hypoplasia

Autopsy: Severe olivopontocerebellar and thalamic hypoplasia and scattered cavitations in the white matter

USG brain: cerebellar hypoplasia

MRI at age 12 years: bilateral increased signal intensity in FLAIR and T2W sequencing in both occipital cortical and juxtacortical areas

MRI at age 17 years cerebellar atrophy, widened ventricular space, scars from cortical necrotic lesions in both occipital areas

Lactic acidosis×
Effect of CoQ10 supplementNo significant improvementNo significant improvementCardiac function stableNo significant improvementNo significant improvementNot usedNot usedNot usedNot usedNot used

MRS magnetic resonance spectroscopy, MRI magnetic resonance imaging, FLAIR fluid-attenuated inversion recovery, GDD global developmental delay, DD developmental delay, IUGR intrauterine growth restriction, USG ultrasound

Table 2

Phenotypic comparison between patients in this study and previously reported cases

This studyChung et al.[3]Brea-Calvo et al.[2]Sondheimer et al.[4]Bosch et al.[5]Lu et al.[6]
Number of subjects1165122
Female-to-male ratio7:46:03:20:11:11:1
Age of presentationBirth to 8 monthsBirth to day 1Birth to 6 h1 day4–9 years1–2 months
Neonatal onset5/11 (45%)6/6 (100%)4/5 (80%)1/1 (100%)0/2 (0%)2/2 (100%)
Infantile onset6/11 (54%)0/6 (0%)1/5 (20%)0/1 (0%)0/2 (0%)0/2 (0%)
Childhood onset0/11 (0%)0/6 (0%)0/5 (0%)0/1 (0%)2/2 (100%)0/2 (0%)
Respiratory distress5/11 (45%)6/6 (100%)a4/4 (100%)1/1 (100%)2/2 (100%)
Cardiomyopathy6/11 (54%)5/6 (83%)2/5 (40%)1/1 (100%)1/2 (50%)
Hypotonia7/11 (64%)a5/5 (100%)2/5 (40%)1/1 (100%)
Dystonia2/11 (18%)2/2 (100%)
Seizures8/11 (73%)3/6 (50%)3/5 (60%)1/1 (100%)2/2 (100%)2/2 (100%)
Lactic acidosis10/11 (91%)4/6 (67%)4/5 (80%)1/1 (100%)2/2 (100%)
Cerebellar atrophy6/11 (54%)a4/5 (80%)3/5 (60%)2/2 (100%)
Basal ganglia5/11 (45%)1/2 (50%)

aLacking information from one patient

Fig. 1

Cerebral magnetic resonance (MR) findings. a Axial T1W, b axial FLAIR, c DWI from Patient 1 at neonatal stage, and d axial T2W at follow-up; e axial T1W and f MR spectroscopy (MRS) at basal ganglia at neonate and g axial T1W at infant stages from Patient 4; h coronal T2W, i sagittal T1W, j axial T2W, k axial T1W from Patient 11. MR features include cerebellar atrophy (white arrows) (h, i) with progression (e, g); cerebral atrophy with frontal and anterior temporal lobar predominance (i–k); thinning of the corpus callosum (i); white matter loss and cystic change with frontal predominance (asterisks) (j, k); basal ganglia involvement with restricted diffusion and cystic change on follow-up (curved arrows) (a–d); lactate peak at around 1.3 ppm on MRS (arrowheads) (f)

Fig. 2

Pedigrees of 9 families with 11 subjects described in our study

Summary of characteristics of 11 patients with COQ4 mutations in this study and previously reported cases Areflexia Acrocyanosis Respiratory failure Bradycardia Severe IUGR Respiratory failure Respiratory distress syndrome Distal arthrogryposis Progressive motor deterioration after 10 months old, spastic ataxic gait at age 3 years Wheelchair bound by age 6 years Progressive swallowing difficulties requiring gastrostomy Cognitive deterioration Polyneuropathy with slow conduction Progressive scoliosis USG brain: cerebellar hypoplasia Autopsy: Severe olivopontocerebellar and thalamic hypoplasia and scattered cavitations in the white matter MRI at age 12 years: bilateral increased signal intensity in FLAIR and T2W sequencing in both occipital cortical and juxtacortical areas MRI at age 17 years cerebellar atrophy, widened ventricular space, scars from cortical necrotic lesions in both occipital areas IUGR Moderate cerebellar hypoplasia IUGR Moderate cerebellar hypoplasia Feeding difficulties, GDD, microcephaly Delayed speech Tremor since age 4 years Progressive motor deterioration; wheelchair bound by age 12 years, then dysarthria Spastic tetraparesis Ataxia of upper and lower limbs Abnormal cognitive development Tremor since age 10 years Moderate intellectual disability Frequent falls Right hemi-anopsia Second stroke-like episode at age 14 years Dystonia since birth Hearing impairment Feeding difficulty Progressive motor deterioration Failure to thrive Dystonia since birth Hearing impairment Feeding difficulty Progressive motor deterioration Nystagmus at 2 months Fetal MRI at 30 weeks and Day 2 10 years 13 years Small cerebellar size and diffuse T2 white matter hyperintensity MRS decreased N-acetylaspartate and a lactate peak Fetal MRI: normal intracranial anatomy, transverse cerebellar diameter 10–15th percentile MRI on Day 2: decreased cerebellar hemisphere volume First week: focal regions of cortical increased T1 signal and magnetic resonance spectroscopy identified enlarged lactate peaks Tenth week: microcephaly with volume loss and increasing prominence of lactate peaks Age 10 years: Cavernoma in the left parietal lobe Age 13 years: Lesion at left occipital lobe with clear diffusion restriction 1 month: normal 4 months: found lesions in midbrain and basal ganglia 3 years and 8 months: CT brain: symmetrical, patchy, low density shadow in bilateral basal ganglia and diffuse brain atrophy MRS magnetic resonance spectroscopy, MRI magnetic resonance imaging, FLAIR fluid-attenuated inversion recovery, GDD global developmental delay, DD developmental delay, IUGR intrauterine growth restriction, USG ultrasound Phenotypic comparison between patients in this study and previously reported cases aLacking information from one patient Cerebral magnetic resonance (MR) findings. a Axial T1W, b axial FLAIR, c DWI from Patient 1 at neonatal stage, and d axial T2W at follow-up; e axial T1W and f MR spectroscopy (MRS) at basal ganglia at neonate and g axial T1W at infant stages from Patient 4; h coronal T2W, i sagittal T1W, j axial T2W, k axial T1W from Patient 11. MR features include cerebellar atrophy (white arrows) (h, i) with progression (e, g); cerebral atrophy with frontal and anterior temporal lobar predominance (i–k); thinning of the corpus callosum (i); white matter loss and cystic change with frontal predominance (asterisks) (j, k); basal ganglia involvement with restricted diffusion and cystic change on follow-up (curved arrows) (a–d); lactate peak at around 1.3 ppm on MRS (arrowheads) (f) Pedigrees of 9 families with 11 subjects described in our study

Patient 1

Patient 1 was a male with an antenatal history of oligohydramnios and intrauterine growth restriction (IUGR). He was born at 38 weeks. At 7 days old, he developed recurrent episodes of apnea, decreased activity, and mild lactic acidemia. On day 14, he developed circulatory collapse with severe metabolic acidosis and lactic acidosis up to 28.36 mmol/L (reference range 0.5–2.20), hypotension requiring multiple inotropes, an episode of pulseless ventricular tachycardia, and respiratory failure requiring intubation and ventilator support. Thereafter, he developed recurrent convulsions controlled by phenobarbitone and levetiracetam. MRI of the brain at 3 weeks of age showed symmetrical T1 and T2 hyperintensity with restricted diffusion at bilateral lentiform nuclei. Foci of restricted diffusion were also detected at bilateral frontal white matter (Fig. 1a–c). Magnetic resonance spectroscopy (MRS) showed raised lactate peaks at bilateral basal ganglia and cerebral white matter. Subsequent follow-up MRI showed established infarcts with cystic changes at bilateral lentiform nuclei (Fig. 1d). Mild cerebellar hypoplasia was also noted. Serial echocardiography in the following months showed progressive septal and ventricular myocardial hypertrophy. WES identified compound heterozygous mutations in COQ4, a missense c.370G>A, p.(Gly124Ser) and a splicing mutation c.402+1G>C. Functional analysis of the skin fibroblasts showed ETC complex II+III deficiency due to low CoQ concentration. At 5 months of age, CoQ10 supplement up to 40 mg/kg/day. At 8 months, in view of poor neurological prognosis and poor response to CoQ10 treatment, he was diverted to comfort care and extubated. He passed away shortly from respiratory failure.

Patient 2

Patient 2 was a term newborn male. He developed respiratory distress, hypotension, and progressive metabolic acidosis with a lactate level of 2.6 mmol/L and hyperalaninemia requiring intubation and inotropic support on day 1 of life. Echocardiogram revealed hypertrophic cardiomyopathy. Plasma amino acids revealed high alanine, proline, and tyrosine, and acylcarnitine profile was unremarkable. CoQ10 supplement at 15 mg/kg/day and carnitine at 100 mg/kg/day were tried on his second day of life but the patient succumbed. WES revealed compound heterozygous mutations in COQ4: a missense c.370G>A, p.(Gly124Ser) and a splicing mutation of c.402+1G>C.

Patient 3

Patient 3 was born full term at 37 weeks. She developed transient respiratory distress shortly after birth. On day 22 of life, she had cardiogenic shock. Echocardiogram showed poor contractility with a left ventricular ejection fraction of 20% and a moderate pericardial effusion. There was associated lactic acidemia (24 mmol/L; reference range 0.5–2.2) and hyperammonemia (139 µmol/L; reference range <100). She was empirically given CoQ10 supplementation and intravenous immunoglobulin. Her cardiac function improved gradually and normalized by day 32 of life. She developed seizures at 4 months of age requiring multiple anticonvulsants. She is severely delayed developmentally. WES revealed a homozygous COQ4 mutation c.370G>A, p.(Gly124Ser).

Patient 4 and Patient 5

Patient 4 was the younger sister of Patient 5. She had antenatal history of IUGR and was born at 38 weeks. Immediately postnatal, she developed respiratory distress with intermittent apnea and lactic acidemia (up to 10 mmol/L; reference range 0.5–2.2). MRI brain showed symmetrical T1 hyperintensity at bilateral basal ganglia, with mild cerebellar hypoplasia (Fig. 1e). MRS showed raised lactate peaks at bilateral basal ganglia (Fig. 1f). She developed treatment-resistant seizures at 2 months of age. Subsequent MRI at 9 months of age showed generalized progressive cerebellar and cerebral atrophy, with diffuse white matter loss including thinning of the corpus callosum. Cystic changes were seen within the cerebral white matter, bilateral basal ganglia, and thalami (Fig. 1g). Serial echocardiogram showed progressive moderate left ventricular hypertrophy. Owing to the recognizable clinical presentation, Sanger sequencing was performed and revealed compound heterozygous COQ4 mutation: c.370G>A, p.(Gly124Ser) and c.402+1G>C. CoQ10 supplement has been started since age of 4 years 5 months. Patient 5 was the elder sister of Patient 4. She was born at 39 weeks with an antenatal history of IUGR. She developed seizures from 2 months of age with associated lactic acidosis and respiratory failure requiring home ventilation. Chest radiograph showed cardiomegaly. CoQ10 supplementation was tried at 1 year of age but passed way from respiratory failure 1 month after. After the genetic diagnosis of her younger sister, Sanger sequencing was performed retrospectively and revealed the same compound heterozygous COQ4 mutation as her sister, c.370G>A, p.(Gly124Ser) and c.402+1G>C.

Patient 6

Patient 6 presented at 8 months of life with severe global developmental delay, microcephaly, generalized dystonia, cortical visual impairment, and oromotor dysfunction. Metabolic workup revealed lactic acidemia of 2.5–5.9 mmol/L and hyperalanemia (626 µmol/L; reference range 143–439). WES revealed compound heterozygous mutations in the COQ4 gene: c.550T>C, p.(Trp184Arg) and c.402+1G>A. Functional analysis of the skin fibroblasts showed ETC complex II+III deficiency with low CoQ concentration. There was no further follow-up because of overseas adoption.

Patient 7

Patient 7 was a girl, born full term. She had bilateral cortical visual impairment since birth and progressive oromotor dysfunction requiring gastrostomy feeding. She had severe global developmental delay. She developed generalized dystonia and spasticity around 5 months of age. Lactic acidemia of 2.4–3.2 mmol/L was present. WES revealed a homozygous variant in the COQ4 gene: c.370G>A, p.(Gly124Ser). Functional analysis of the skin fibroblast showed ETC complex II+III deficiency and low CoQ concentration. She had been on CoQ10 supplement since 2 years old. There was no clinical improvement and the patient died at 3 years and 6 months of age.

Patient 8

Patient 8 is a girl, born full term. She developed infantile spasms at 6 months of age. Metabolic workup showed lactic acidemia at 2.2–4.2 mmol/L and hyperalanemia (487 µmol/L; reference range 143–439). WES revealed compound heterozygous variants of the COQ4 gene c.371G>T, p.(Gly124Val) inherited from the mother and c.370G>A, p.(Gly124Ser) inherited from the father. Interestingly, respiratory chain enzymology of the skeletal muscle activities was normal but skin fibroblast functional analysis showed ETC complex II+III deficiency and low CoQ10 concentration. CoQ10 supplement has been given since 9 months of age, with subjective improvement in responsiveness. She is alive and has achieved fair seizure control with levetiracetam and global developmental delay.

Patient 9

Patient 9 is a boy, born full term at 40 weeks. He presented with infantile spasms at 2 months of age. CoQ10 supplementation started at 7 years of age and has remained stable. WES revealed a homozygous COQ4 mutation, c.370G>A, p.(Gly124Ser). Skin fibroblast functional analysis showed ETC complex II+III deficiency and low CoQ concentration.

Patient 10 and Patient 11

Patient 10 is the younger sister of Patient 11. She was born at 36 weeks. She developed transient respiratory distress after birth. She was asymptomatic until 2 months of age when she developed progressive hypotonia, cortical visual impairment, severe developmental delay, and seizures requiring multiple anticonvulsants. Her echocardiogram showed progressive dilated cardiomyopathy and mitral regurgitation. WES revealed a homozygous COQ4 mutation: c.370G>A, p. (Gly124Ser). CoQ10 supplement at 30 mg/kg/day was started at 11 months of age, and her seizure control improved. Patient 11 is the elder sister of Patient 10. She was born full term. At 4 months of age, she presented with seizures, hypotonia, spasticity, oromotor dysfunction, and severe developmental delay. She also developed an episode of acute myocarditis during which her echocardiogram showed diastolic dysfunction. Brain MRI at 14 months showed mild cerebellar atrophy and cerebral atrophy, white matter cystic changes with bilateral frontal and anterior temporal predominance, and thinning of the corpus callosum. Basal ganglia and brainstem appeared preserved (Fig. 1h–k). No lactic acidosis was detected. Owing to the exome findings of her sister, Sanger sequencing was performed and revealed a homozygous COQ4 mutation: c.370G>A, p.(Gly124Ser). She was not on CoQ10 supplement and passed away at 20 months due to an episode of sepsis.

Results

Pathogenicity of the COQ4 variants

We analyzed the COQ4 variants identified in our cohort by previously reported literatures, ClinVar, population frequency in gnomAD,[7] conversation score by Combined Annotation-Dependent Depletion,[8] in silico prediction by Rare Exome Variant Ensemble Learner,[9] and protein stability change prediction by STRUM[10] (Table 3). All variants demonstrated a deleterious effect. Together with the reduced level of CoQ10 of the patients, the pathogenicity of these variants is strongly supported by the biochemical findings of the patients.
Table 3

Analysis of the four variants identified in our cohort

VariantgnomAD population frequencyReported to be disease causing?CADDREVELddG
c.370G>A, p.(Gly124Ser)1.13e−04Yes (Lu et al.[6])24.80.817−1.19
c.402+1G>C2.79e−05Yes (ClinVar)28.8N/AN/A
c.371G>T, p.(Gly124Val)3.98e−06No24.60.753−1.53
c.550T>C, p.(Trp184Arg)0No26.70.538−0.62

CADD Combined Annotation-Dependent Depletion, REVEL Rare Exome Variant Ensemble Learner, N/A not available

Analysis of the four variants identified in our cohort CADD Combined Annotation-Dependent Depletion, REVEL Rare Exome Variant Ensemble Learner, N/A not available

Founder mutation analysis

Among these 11 patients, we identified the same missense mutation c.370G>A, p.(Gly124Ser) in 10 of them. This missense mutation is a rare variant with a population frequency of 0.001118 and it is exclusively found in South East Asians in the gnomAD database.[7] Further analysis of the DNA of the five homozygous patients using Infinium OmniZhongHua-8 BeadChip SNP array showed a common haplotype of 0.464–3.290 cM implying that the mutation was inherited from a common ancestor 27 generations ago (Fig. 3). In addition, by principal component analysis), our SNP array data are clustered with Chinese and Japanese of HapMap Phase II (n = 270) and a local southern Chinese database (n = 612). Furthermore, the pathogenicity of this mutation has been established via the reduced CoQ level in the skin fibroblasts in Patients 7 and 9 who have homozygous c.370G>A mutation (Table 4). Altogether our study confirms that the missense mutation c.370G>A, p.(Gly124Ser) represents a pathogenic founder mutation in the southern Chinese population.
Fig. 3

Founder mutation analysis. Shared haplotypes among homozygous COQ4:c.370G>A. Red square indicates the location of homozygous COQ4:c.370G>A, while black square indicates the nearest heterozygous single-nucleotide polymorphism. The length of the haplotype for each subject is at the right panel. The maximum shared length is approximately 577 kb

Table 4

COQ level in the skin fibroblasts in patients with COQ4 mutation

PatientTissueCOQ levelCICI+IIICIICII+IIICIIICIV
1Skin fibroblast0.4 pmol/U COX (1.64–3.32)NormalNot doneNormal130 mU/U COX (269–781)NormalNormal
6Skin fibroblast0.63 pmol/U CS (1.04–2.92)NormalNot doneNormal183 mU/U COX (269–781)NormalNormal
7Skin fibroblast0.4 pmol/UCOX (1.64–3.32)Not doneNot doneNormal183 mU/UCOX (269–781)NormalNot done
8Muscle191 pmol/mg (140–580)NormalNot doneNormalNot doneNormalNormal
Skin fibroblast0.29 nmol/UCOX (1.64–3.32)NormalNot doneNormal135 mU/U COX (control 269–781 in the skin)NormalNormal
9Skin fibroblast16.4 ng/mg prot (46.1 ± 3)Not done64% of CS90% of CS55% of CSNot done67% of CS

Reference values are given in brackets. Experiment performed at the Radboud University Medical Centre, Nijmegen and the National Taiwan University Hospital

CI complex I, CII complex II, CIII complex III, CIV complex IV, CS citrate synthase

Founder mutation analysis. Shared haplotypes among homozygous COQ4:c.370G>A. Red square indicates the location of homozygous COQ4:c.370G>A, while black square indicates the nearest heterozygous single-nucleotide polymorphism. The length of the haplotype for each subject is at the right panel. The maximum shared length is approximately 577 kb COQ level in the skin fibroblasts in patients with COQ4 mutation Reference values are given in brackets. Experiment performed at the Radboud University Medical Centre, Nijmegen and the National Taiwan University Hospital CI complex I, CII complex II, CIII complex III, CIV complex IV, CS citrate synthase

Discussion

To our knowledge, this is the largest case series of primary COQ10D7 reported. In the literature, primary COQ10D7 cases have been described predominantly with a neonatal onset, with only two cases of childhood onset.[2-5,8] In this study, we have expanded the phenotypic spectrum of primary COQ10D7 from neonatal to infantile onset. We have five patients exhibiting the well-described neonatal presentation of COQ10D7 as in the literature, characterized by respiratory distress, encephalopathy, seizures, hypotonia, and cardiomyopathy. Previously, it was believed that phenotypes from affected males with COQ4 mutation would be more severe and highly likely lethal.[3,6] However, in our study the male-to-female death ratio was 2:3. We have six patients with infantile-onset phenotypes. Unlike those of neonatal onset, MRI brain for those infantile-onset patients did not show characteristic basal ganglia lesions. Dystonia was observed in two out of the six patients with infantile-onset presentation in our cohort, and it was also observed in the two neonatal-onset cases reported by Lu et al.[8] but not reported in non-Chinese patient. A summary of the predominant phenotypes in the spectrum of neonatal, infantile, and childhood onset of COQ10D7 is shown in Fig. 4. The variegated symptoms and disease onsets explain the frequent delay of diagnoses of COQ10D7. This also highlights the importance of the complementarity of biochemical screening for children with unexplained neurological disturbances and the prompt application of WES in order to reach a genetic diagnosis that has an impact on patient management.
Fig. 4

Phenotypic spectrum of neonatal, infantile, and childhood onset of COQ10D7 from all the reported cases including this study. †Lactic acidosis is not mentioned in the childhood-onset cases. (The color intensity representing the percentage of patients having that clinical presentation in arbitrary form)

Phenotypic spectrum of neonatal, infantile, and childhood onset of COQ10D7 from all the reported cases including this study. †Lactic acidosis is not mentioned in the childhood-onset cases. (The color intensity representing the percentage of patients having that clinical presentation in arbitrary form) Functional analysis to demonstrate the deficiency of CoQ should be carefully examined because mitochondrial enzymology can be tissue specific. In this study, among the five patients (Patients 1, 6, 7, 8, 9) with ETC chain analysis in the skin fibroblast, all of them shown a reduced level of succinate:cytochrome c oxidoreductase (complex II+III). Measurement of CoQ level was also found significantly decreased. For Patients 7 and 8, complex II+III analysis and CoQ level measurement were also performed in the muscle. Interestingly, the CoQ level from the muscle is normal but that from skin fibroblasts was reduced. From the Genotype-Tissue Expression (GTex) data, the COQ4 median expression in the muscle is 7.58 transcripts per million (TPM) while in the skin it is 44.14 TPM, demonstrating a 6-fold lower expression in the muscle. More significantly, we have identified a common founder pathogenic COQ4 mutation associated with COD10D7. In this study, 10 out of the 11 patients carry the COQ4: c.370G>A, p.(Gly124Ser) allele. This mutation fulfills the criteria of a founder mutation: (1) all patients with the mutant alleles share a haplotype associated with the mutation; (2) the haplotype is shared among affected families with a genetic distance >1 cM; (3) the mutant allele is rare and specific to the population; and (4) all carriers are delineated to the same geographic region. It is likely that this founder mutation causes a relatively higher rate of COQ10D7 in southern Chinese individuals, and that may explain why we can present a larger cohort as compared to past studies in this field. CoQ10 oral supplementation was previously reported effective in COQ4 mutation cases.[2-4,6] Among the 10 patients who received CoQ10 supplement and with continuous follow-up, those shown with stabilized cardiac condition or seizure control are those of genotype of homozygous missense variant c.370G>A (Patients 3, 9, 10). Another patient on CoQ supplement with improved clinical condition is Patient 8 with genotype of compound heterozygous missense variants c.370G>A/c.371G>T. For those without improvement are patients with genotype in the presence of a splicing mutation c.402+1G>A (Patients 1, 2, 4, 5, 6). Among these five patients, three of them (Patients 1, 2, and 5) died from the disease. Retrospectively, Patients 1, 4, and 5 were documented IUGR antenatally. This may suggest that the presence of c.402+1G>A, a loss-of-function mutation, would cause more severe neonatal onset of phenotypes and less responsive to CoQ10 supplement. In this study, we have expanded the phenotypic spectrum of COQ4 mutation. Now COQ10D7 can range from neonatal, infantile to childhood onset. We have also identified a pathogenic COQ4 founder mutation in the southern Chinese population. The importance of complementarity of biochemical screening and prompt application of WES on patients with unexplained neurological symptoms is highlighted.
  10 in total

1.  STRUM: structure-based prediction of protein stability changes upon single-point mutation.

Authors:  Lijun Quan; Qiang Lv; Yang Zhang
Journal:  Bioinformatics       Date:  2016-06-17       Impact factor: 6.937

2.  REVEL: An Ensemble Method for Predicting the Pathogenicity of Rare Missense Variants.

Authors:  Nilah M Ioannidis; Joseph H Rothstein; Vikas Pejaver; Sumit Middha; Shannon K McDonnell; Saurabh Baheti; Anthony Musolf; Qing Li; Emily Holzinger; Danielle Karyadi; Lisa A Cannon-Albright; Craig C Teerlink; Janet L Stanford; William B Isaacs; Jianfeng Xu; Kathleen A Cooney; Ethan M Lange; Johanna Schleutker; John D Carpten; Isaac J Powell; Olivier Cussenot; Geraldine Cancel-Tassin; Graham G Giles; Robert J MacInnis; Christiane Maier; Chih-Lin Hsieh; Fredrik Wiklund; William J Catalona; William D Foulkes; Diptasri Mandal; Rosalind A Eeles; Zsofia Kote-Jarai; Carlos D Bustamante; Daniel J Schaid; Trevor Hastie; Elaine A Ostrander; Joan E Bailey-Wilson; Predrag Radivojac; Stephen N Thibodeau; Alice S Whittemore; Weiva Sieh
Journal:  Am J Hum Genet       Date:  2016-09-22       Impact factor: 11.025

3.  Clinical phenotype, in silico and biomedical analyses, and intervention for an East Asian population-specific c.370G>A (p.G124S) COQ4 mutation in a Chinese family with CoQ10 deficiency-associated Leigh syndrome.

Authors:  Mei Lu; Yulin Zhou; Zengge Wang; Zhongmin Xia; Jun Ren; Qiwei Guo
Journal:  J Hum Genet       Date:  2019-01-18       Impact factor: 3.172

4.  Mutations in COQ4, an essential component of coenzyme Q biosynthesis, cause lethal neonatal mitochondrial encephalomyopathy.

Authors:  Wendy K Chung; Kimberly Martin; Chaim Jalas; Stephen R Braddock; Jane Juusola; Kristin G Monaghan; Barbara Warner; Samuel Franks; Marc Yudkoff; Lauren Lulis; Roy H Rhodes; Vinay Prasad; Erin Torti; Megan T Cho; Marwan Shinawi
Journal:  J Med Genet       Date:  2015-07-16       Impact factor: 6.318

Review 5.  Genetic bases and clinical manifestations of coenzyme Q10 (CoQ 10) deficiency.

Authors:  Maria Andrea Desbats; Giada Lunardi; Mara Doimo; Eva Trevisson; Leonardo Salviati
Journal:  J Inherit Metab Dis       Date:  2014-08-05       Impact factor: 4.982

6.  COQ4 mutations cause a broad spectrum of mitochondrial disorders associated with CoQ10 deficiency.

Authors:  Gloria Brea-Calvo; Tobias B Haack; Daniela Karall; Akira Ohtake; Federica Invernizzi; Rosalba Carrozzo; Laura Kremer; Sabrina Dusi; Christine Fauth; Sabine Scholl-Bürgi; Elisabeth Graf; Uwe Ahting; Nicoletta Resta; Nicola Laforgia; Daniela Verrigni; Yasushi Okazaki; Masakazu Kohda; Diego Martinelli; Peter Freisinger; Tim M Strom; Thomas Meitinger; Costanza Lamperti; Atilano Lacson; Placido Navas; Johannes A Mayr; Enrico Bertini; Kei Murayama; Massimo Zeviani; Holger Prokisch; Daniele Ghezzi
Journal:  Am J Hum Genet       Date:  2015-02-05       Impact factor: 11.025

7.  Novel recessive mutations in COQ4 cause severe infantile cardiomyopathy and encephalopathy associated with CoQ10 deficiency.

Authors:  Neal Sondheimer; Stacy Hewson; Jessie M Cameron; Gino R Somers; Jane Dunning Broadbent; Marcello Ziosi; Catarina Maria Quinzii; Ali B Naini
Journal:  Mol Genet Metab Rep       Date:  2017-05-11

8.  Analysis of protein-coding genetic variation in 60,706 humans.

Authors:  Monkol Lek; Konrad J Karczewski; Eric V Minikel; Kaitlin E Samocha; Eric Banks; Timothy Fennell; Anne H O'Donnell-Luria; James S Ware; Andrew J Hill; Beryl B Cummings; Taru Tukiainen; Daniel P Birnbaum; Jack A Kosmicki; Laramie E Duncan; Karol Estrada; Fengmei Zhao; James Zou; Emma Pierce-Hoffman; Joanne Berghout; David N Cooper; Nicole Deflaux; Mark DePristo; Ron Do; Jason Flannick; Menachem Fromer; Laura Gauthier; Jackie Goldstein; Namrata Gupta; Daniel Howrigan; Adam Kiezun; Mitja I Kurki; Ami Levy Moonshine; Pradeep Natarajan; Lorena Orozco; Gina M Peloso; Ryan Poplin; Manuel A Rivas; Valentin Ruano-Rubio; Samuel A Rose; Douglas M Ruderfer; Khalid Shakir; Peter D Stenson; Christine Stevens; Brett P Thomas; Grace Tiao; Maria T Tusie-Luna; Ben Weisburd; Hong-Hee Won; Dongmei Yu; David M Altshuler; Diego Ardissino; Michael Boehnke; John Danesh; Stacey Donnelly; Roberto Elosua; Jose C Florez; Stacey B Gabriel; Gad Getz; Stephen J Glatt; Christina M Hultman; Sekar Kathiresan; Markku Laakso; Steven McCarroll; Mark I McCarthy; Dermot McGovern; Ruth McPherson; Benjamin M Neale; Aarno Palotie; Shaun M Purcell; Danish Saleheen; Jeremiah M Scharf; Pamela Sklar; Patrick F Sullivan; Jaakko Tuomilehto; Ming T Tsuang; Hugh C Watkins; James G Wilson; Mark J Daly; Daniel G MacArthur
Journal:  Nature       Date:  2016-08-18       Impact factor: 49.962

9.  Coenzyme Q10 deficiency due to a COQ4 gene defect causes childhood-onset spinocerebellar ataxia and stroke-like episodes.

Authors:  Annet M Bosch; Erik-Jan Kamsteeg; Richard J Rodenburg; Arend W van Deutekom; Dennis R Buis; Marc Engelen; Jan-Maarten Cobben
Journal:  Mol Genet Metab Rep       Date:  2018-09-13

10.  CADD: predicting the deleteriousness of variants throughout the human genome.

Authors:  Philipp Rentzsch; Daniela Witten; Gregory M Cooper; Jay Shendure; Martin Kircher
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

  10 in total
  9 in total

Review 1.  Neuromitochondrial Disorders : Genomic Basis and an Algorithmic Approach to Imaging Diagnostics.

Authors:  Santhakumar Senthilvelan; Sabarish S Sekar; Chandrasekharan Kesavadas; Bejoy Thomas
Journal:  Clin Neuroradiol       Date:  2021-06-09       Impact factor: 3.649

2.  A novel COQ7 mutation causing primarily neuromuscular pathology and its treatment options.

Authors:  Ying Wang; Evren Gumus; Siegfried Hekimi
Journal:  Mol Genet Metab Rep       Date:  2022-05-05

Review 3.  Coenzyme Q10 effects in neurological diseases.

Authors:  H Rauchová
Journal:  Physiol Res       Date:  2021-12-30       Impact factor: 2.139

4.  New pathogenic variants in COQ4 cause ataxia and neurodevelopmental disorder without detectable CoQ10 deficiency in muscle or skin fibroblasts.

Authors:  Serena Mero; Leonardo Salviati; Vincenzo Leuzzi; Anna Rubegni; Cristina Calderan; Francesca Nardecchia; Daniele Galatolo; Maria Andrea Desbats; Valentina Naef; Federica Gemignani; Maria Novelli; Alessandra Tessa; Roberta Battini; Filippo M Santorelli; Maria Marchese
Journal:  J Neurol       Date:  2021-03-11       Impact factor: 4.849

5.  Delineation of molecular findings by whole-exome sequencing for suspected cases of paediatric-onset mitochondrial diseases in the Southern Chinese population.

Authors:  Mandy H Y Tsang; Anna K Y Kwong; Kate L S Chan; Jasmine L F Fung; Mullin H C Yu; Christopher C Y Mak; Kit-San Yeung; Richard J T Rodenburg; Jan A M Smeitink; Rachel Chan; Thomas Tsoi; Joannie Hui; Shelia S N Wong; Shuk-Mui Tai; Victor C M Chan; Che-Kwan Ma; Sharon T H Fung; Shun-Ping Wu; W K Chak; Brian H Y Chung; Cheuk-Wing Fung
Journal:  Hum Genomics       Date:  2020-09-10       Impact factor: 4.639

6.  The KLHL40 c.1516A>C is a Chinese-specific founder mutation causing nemaline myopathy 8: Report of six patients with pre- and postnatal phenotypes.

Authors:  Kit San Yeung; Florrie N Y Yu; Cheuk Wing Fung; Sheila Wong; Hencher H C Lee; Sharon T H Fung; Genevieve P G Fung; Kwok Yin Leung; Wai Hang Chung; Yun Ting Lee; Vivian K S Ng; Mullin H C Yu; Jasmine L F Fung; Mandy H Y Tsang; Kelvin Y K Chan; Sophelia H S Chan; Anita S Y Kan; Brian H Y Chung
Journal:  Mol Genet Genomic Med       Date:  2020-04-30       Impact factor: 2.183

Review 7.  Primary Coenzyme Q10 Deficiency-7 and Pathogenic COQ4 Variants: Clinical Presentation, Biochemical Analyses, and Treatment.

Authors:  Jieqiong Xie; Jiayang Jiang; Qiwei Guo
Journal:  Front Genet       Date:  2022-01-26       Impact factor: 4.599

8.  Primary coenzyme Q10 deficiency due to COQ8A gene mutations.

Authors:  Linwei Zhang; Tetsuo Ashizawa; Dantao Peng
Journal:  Mol Genet Genomic Med       Date:  2020-08-02       Impact factor: 2.183

9.  Rapid whole-exome sequencing facilitates precision medicine in paediatric rare disease patients and reduces healthcare costs.

Authors:  Claudia C Y Chung; Gordon K C Leung; Christopher C Y Mak; Jasmine L F Fung; Mianne Lee; Steven L C Pei; Mullin H C Yu; Vivian C C Hui; Joshua C K Chan; Jeffrey F T Chau; Marcus C Y Chan; Mandy H Y Tsang; Wilfred H S Wong; Joanna Y L Tung; Kin Shing Lun; Yiu Ki Ng; Cheuk Wing Fung; Mabel S C Wong; Rosanna M S Wong; Yu Lung Lau; Godfrey C F Chan; So Lun Lee; Kit San Yeung; Brian H Y Chung
Journal:  Lancet Reg Health West Pac       Date:  2020-07-24
  9 in total

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