| Literature DB >> 31392111 |
Sufin Yap1, Nadine Gougeard2,3, Anthony R Hart4, Belén Barcelona2,3, Vicente Rubio2,3.
Abstract
N-carbamoyl-l-glutamate (NCG), the N-acetyl-l-glutamate analogue used to treat N-acetylglutamate synthase deficiency, has been proposed as potential therapy of carbamoyl phosphate synthetase 1 deficiency (CPS1D). Previous findings in five CPS1D patients suggest that NCG-responsiveness could be mutation-specific. We report on a patient with CPS1D, homozygous for the novel p.(Pro1211Arg) CPS1 mutation, who presented at 9 days of life with hyperammonemic coma which was successfully treated with emergency measures. He remained metabolically stable on merely oral NCG, arginine, and modest protein restriction. Ammonia scavengers were only added after poor dietary compliance following solid food intake at age 1 year. The patient received a liver transplantation at 3.9 years of age, having normal cognitive, motor, and quality of life scores despite repeated but successfully treated episodes of hyperammonemia. Studies using recombinantly produced mutant CPS1 confirmed the partial nature of the CPS1D triggered by the p.(Pro1211Arg) mutation. This mutation decreased the solubility and yield of CPS1 as expected for increased tendency to misfold, and reduced the thermal stability, maximum specific activity (V max; ~2-fold reduction), and apparent affinity (~5-fold reduction) for ATP of the purified enzyme. By increasing the saturation of the NAG site in vivo, NCG could stabilize CPS1 and minimize the decrease in the effective affinity of the enzyme for ATP. These observations, together with prior experience, support the ascertainment of clinical responsiveness to NCG in CPS1 deficient patients, particularly when decreased stability or lowered affinity for NAG of the mutant enzyme are suspected or proven.Entities:
Keywords: carbamylglutamate; carglumic acid; carglumic acid test trial; hyperammonemia; novel treatments; urea cycle disorders
Year: 2019 PMID: 31392111 PMCID: PMC6606979 DOI: 10.1002/jmd2.12034
Source DB: PubMed Journal: JIMD Rep ISSN: 2192-8304
Figure 1Patient data. NaB and NaP stand for Na benzoate and Na phenylbutyrate, respectively. A, Protein intake (top), administration of drugs (middle), and ammonia levels (bottom) until metabolic stabilization during the first hyperammonemic crisis, plotted vs days from start of intervention (day 1 corresponds to day 9 of life). B, Lifelong levels of plasma ammonia (top), glutamine (middle), and isoleucine (bottom), excluding the initial period of presentation and stabilization. The colored horizontal bands denote the addition of ammonia scavengers, as indicated, to the treatment regime of the patient. Arrows indicate febrile events associated with increased ammonia levels and very severe events that required hemofiltration, as specified. C, Corresponding boxplots for the lifelong ammonia, glutamine, and isoleucine levels including (1) or excluding (2) levels during periods of decompensation. EAA, essential amino acid
Figure 2The p.(Pro1211Arg) mutation. A, Summary of the characteristics and in silico predictions for the mutation identified in our patient. (B) and (C) SDS‐PAGE of prestained protein standards (St) of the indicated masses (given on the side in kDa) and of wild‐type (WT) and p.(Pro1211Arg) (P1211R) CPS1 mutant of (B) total crude insect cell extracts and of the postcentrifugal supernatant, as indicated, to show the decreased solubility of the mutant form relative to WT CPS1 (CPS1 band marked with arrowpoint); or (C) after enzyme purification, with yields and enzyme activities of the purified proteins given below the tracks. Significant differences (Student t test) are given with an asterisk. D, Illustration of substrate kinetics for ATP for the wild type and the mutant form. Horizontal broken lines mark apparent V max values and vertical broken lines mark apparent K m ATP. E, Summary of V max (upper panel) and K m (lower panel) values for all three substrates. The asterisks denote significant differences for the indicated P value. F, Thermal inactivation experiments (for details see Section 2). Activities are expressed as a percentage of the activities observed after incubation at 37°C (at this temperature none of the two protein forms exhibited substantial activity losses). The broken vertical lines mark the temperatures of mid‐inactivation. CPS1, carbamoyl phosphate synthetase 1; NAG, N‐acetyl‐l‐glutamate
Figure 3Human CPS1, its role in the urea cycle, and the CPS1D‐causing mutation p.(Pro1211Arg). Representations of 3‐D structures correspond to the Protein DataBank (PDB; http://www.rcsb.org/pdb/) file 5DOU for NAG‐activated, adenosine‐5′‐diphosphate (ADP)‐bound human CPS1.5 A, Top, linear scheme of the mature CPS1 polypeptide with the different domains highlighted in various colors and named as in De Cima et al.,5 giving the amino acid numbering at domain boundaries, and the functions of the domains (when known). The position of the p.Pro1211Arg mutation is marked with a red arrow. Large structure, experimental structure of human CPS1 shown in cartoon representation with the domains colored as in the linear scheme. The two nucleotide molecules involved in the reaction are shown in black backbone representation, identifying their roles in the CPS1 reaction with arrows. This reaction, with its three steps, is schematized on top and bottom of the large structure, and the carbamate tunnel that connects both phosphorylation sites has been schematized nonrealistically to symbolize the intramolecular migration of the carbamate from one site to the other. The activator NAG is also represented in black sticks and marked with an arrow. The thick curved green arrows illustrate the fact that NAG activates CPS1 by influencing both phosphorylation sites and by determining the formation of a well‐shaped carbamate tunnel. Pro1211 has been marked with a red sphere and an arrow. The carbamoyl phosphate emerging from the enzyme has been integrated into a highly schematic view of the urea cycle, where classical enzymes and intermediates are labeled (OTC, ASS, ASL, and ARG1 denote ornithine transcarbamylase, argininosuccinate synthetase, argininosuccinate lyase, and arginase 1, respectively), with compartmentation between mitochondria and cytosol symbolized by the blue straight lines. The fact that carbamoyl phosphate, when accumulating as in OTC deficiency results in outflow from the mitochondria and in excessive feeding of the pyrimidine biosynthesis pathway resulting in increased urinary orotate excretion has been schematized too. B, Close up on the site where Pro1211 is located to show that it is at the cross‐roads of both phosphorylation domains and the NAG‐binding domain (each domain in a color and labeled as L1, L3, and L4, respectively), not far from the site for the ATP molecule (ADP in the crystal structure) used in the final phosphorylation step that yields the carbamoyl phosphate, and also close to the very important for activity C‐terminal extension (L4 C‐terminus). The nearby catalytic K′ loop is also labeled. The replacement of Pro1211 (red) by Arg (white) should cause a clash with Ile1301 and Pro1302, likely introducing structural instability and a suboptimal active conformation. Individual amino acids and ADP are illustrated in sticks representation and are labeled using single‐letter code. CPS1, carbamoyl phosphate synthetase 1; CPS1D, CPS1 deficiency; NAG, N‐acetyl‐l‐glutamate