Literature DB >> 31391982

Crystal structure of zymonic acid and a redetermination of its precursor, pyruvic acid.

Dominik Heger1,2, Alexis J Eugene1, Sean R Parkin1, Marcelo I Guzman1.   

Abstract

The structure of zymonic acid (systematic name: 4-hy-droxy-2-methyl-5-oxo-2,5-di-hydro-furan-2-carb-oxy-lic acid), C6H6O5, which had previously eluded crystallographic determination, is presented here for the first time. It forms by intra-molecular condensation of parapyruvic acid, which is the product of aldol condensation of pyruvic acid. A redetermination of the crystal structure of pyruvic acid (systematic name: 2-oxo-propanoic acid), C3H4O3, at low temperature (90 K) and with increased precision, is also presented [for the previous structure, see: Harata et al. (1977 ▸). Acta Cryst. B33, 210-212]. In zymonic acid, the hy-droxy-lactone ring is close to planar (r.m.s. deviation = 0.0108 Å) and the dihedral angle between the ring and the plane formed by the bonds of the methyl and carb-oxy-lic acid carbon atoms to the ring is 88.68 (7)°. The torsion angle of the carb-oxy-lic acid group relative to the ring is 12.04 (16)°. The pyruvic acid mol-ecule is almost planar, having a dihedral angle between the carb-oxy-lic acid and methyl-ketone groups of 3.95 (6)°. Inter-molecular inter-actions in both crystal structures are dominated by hydrogen bonding. The common R 2 2(8) hydrogen-bonding motif links carb-oxy-lic acid groups on adjacent mol-ecules in both structures. In zymonic acid, this results in dimers about a crystallographic twofold of space group C2/c, which forces the carb-oxy-lic acid group to be disordered exactly 50:50, which scrambles the carbonyl and hydroxyl groups and gives an apparent equalization of the C-O bond lengths [1.2568 (16) and 1.2602 (16) Å]. The other hydrogen bonds in zymonic acid (O-H⋯O and weak C-H⋯O), link mol-ecules across a 21-screw axis, and generate an R 2 2(9) motif. These hydrogen-bonding inter-actions propagate to form extended pleated sheets in the ab plane. Stacking of these zigzag sheets along c involves only van der Waals contacts. In pyruvic acid, inversion-related mol-ecules are linked into R 2 2(8) dimers, with van der Waals inter-actions between dimers as the only other inter-molecular contacts.

Entities:  

Keywords:  crystal structure; hydrogen bonding; low temperature; pyruvic; zymonic

Year:  2019        PMID: 31391982      PMCID: PMC6658982          DOI: 10.1107/S2056989019007072

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

The Human Metabolome Database (Wishart et al., 2007 ▸, 2009 ▸, 2013 ▸, 2018 ▸) lists the compound 4-hy­droxy-2-methyl-5-oxo­furan-2-carb­oxy­lic acid (C6H6O5), commonly named zymonic acid, with the metabocard HMDB0031210. Zymonic acid is used as a flavor constituent for confectionery and tobacco products (Yannai, 2004 ▸). The generation of zymonic acid can proceed by condensation of parapyruvic acid, which itself forms by aldol condensation of pyruvic acid (IUPAC name 2-oxo­propanoic acid, C3H4O3; Bloomer et al., 1970 ▸). Therefore, zymonic acid is directly derived from pyruvic acid, and is thus related to the compounds present in the tri­carb­oxy­lic acid (Krebs) cycle (Nelson & Cox, 2004 ▸) and its reductive version (Guzman, 2011 ▸; Guzman & Martin, 2008 ▸; Zhou & Guzman, 2016 ▸). As an inter­mediate in central metabolism, zymonic acid is produced in the cytoplasm at very low concentration, from where it can be excreted to the extracellular region. The electron-impact mass spectrum (MS) and electrospray ionization fragmentation of zymonic acid following gas and liquid chromatography, respectively, have been reported (Allen et al., 2015 ▸, 2016 ▸). The use of 13C-zymonic acid has enabled mapping of pH changes, independently of concentration, in mammalian organs and tumors via hyperpolarized magnetic resonance (Düwel et al., 2017 ▸). Thus, zymonic acid is a non-invasive extracellular imaging sensor to localize and qu­antify pH in vivo (Düwel et al., 2017 ▸; Hundshammer et al., 2017 ▸), with many possible applications in medical diagnosis (Schilling et al., 2016 ▸). As part of the process resulting in the aforementioned invention, the detailed 1H and 13C NMR spectra of pure zymonic acid have been reported (Hundshammer et al., 2017 ▸). Herein, we contribute new information to characterize zymonic acid by reporting for the first time its crystal structure, along with a low-temperature redetermination of pyruvic acid.

Structural commentary

Aside from the effects on the geometry of the carb­oxy­lic acid group in zymonic acid that stem from disorder about the twofold axis (see below), there are no unusual bond lengths or angles in either compound. In zymonic acid (Fig. 1 ▸), the hy­droxy­lactone ring is essentially planar (r.m.s. deviation = 0.0108 Å), with the largest deviation from planarity [0.0171 (8) Å] for the ring oxygen atom, O3. The plane defined by the ring carbon atom C4, the methyl carbon atom C6, and the carb­oxy­lic acid carbon atom C5, is almost perpendicular to the mean plane of the ring atoms [dihedral angle = 88.68 (7)°]. Lastly, the orientation of the carb­oxy­lic acid group relative to the ring, as defined by the torsion angle O4—C5—C4—O3, is 12.04 (16)°. For the carb­oxy­lic acid group, disorder about the crystallographic twofold axis effectively averages the C=O double and C—O single bonds, rendering them equivalent [the C5—O4 and C5—O5 distances are 1.2568 (16) and 1.2602 (16) Å, respectively], and requires modeling of half-occupancy hydrogens (H4O and H5O) on each.
Figure 1

The mol­ecular structure of zymonic acid, with displacement ellipsoids drawn at the 50% probability level.

In spite of increased precision resulting from much lower temperature (90 K versus 266 K) and data collection on modern equipment, the redetermined structure of pyruvic acid (Fig. 2 ▸) is largely unchanged from that reported by Harata et al. (1977 ▸). For example, the dihedral angle between the planes defined by atoms C1/C2/C3/O3 and C1/C2/O1/O2 is 3.95 (6)° at 90.00 (2) K versus 3.5° at 266 (1) K.
Figure 2

The mol­ecular structure of pyruvic acid, with displacement ellipsoids drawn at the 50% probability level.

Supra­molecular features

The main inter­molecular inter­actions in the crystals of both zymonic and pyruvic acids are hydrogen bonds. In zymonic acid, the carb­oxy­lic acid groups of adjacent mol­ecules are related by a crystallographic twofold axis to form hydrogen bonds [O4—H4O⋯O4ii and O5—H5O⋯O5ii; symmetry code: (ii) 1 − x, y,  − z] giving (8) dimer motifs (Table 1 ▸). This common supra­molecular construct in carb­oxy­lic acids usually occurs between inversion-related or symmetry-independent mol­ecules. Here, the orientation of the dimer relative to the crystallographic twofold axis forces the average structure to be statistically disordered (Fig. 3 ▸). Another pair of hydrogen bonds [O2—H2⋯O1i and C3—H3⋯O2i; symmetry code: (i)  − x,  + y,  − z], link mol­ecules related by a 21-screw axis, into (9) motifs (Fig. 4 ▸). These hydrogen-bonding inter­actions combine to form extended pleated sheets that propagate in the ab plane (Fig. 5 ▸), which in turn, stack along the c-axis direction. In pyruvic acid, inversion-related mol­ecules form the common (8) dimer motif (Fig. 6 ▸, Table 2 ▸). In accordance with the work of Harata et al. (1977 ▸), there are no other noteworthy inter­molecular inter­actions.
Table 1

Hydrogen-bond geometry (Å, °) for zymonic acid

D—H⋯A D—HH⋯A DA D—H⋯A
O2—H2⋯O1i 0.841.962.7103 (14)148
C3—H3⋯O2i 0.952.483.0720 (16)120
O4—H4O⋯O4ii 1.091.522.607 (2)176
O5—H5O⋯O5ii 0.991.632.624 (2)179

Symmetry codes: (i) ; (ii) .

Figure 3

The (8) dimer of zymonic acid. Unlabeled atoms are related to their labeled counterparts by a crystallographic twofold axis (1 − x, y,  − z). This uncommon symmetry [for an (8) dimer] forces the O—H⋯O hydrogen bonds involved to be 50:50 disordered about the twofold axis.

Figure 4

The (9) dimer of zymonic acid. Unlabeled atoms are related to their labeled counterparts by a crystallographic 21-screw axis ( − x,  + y,  − z). Disorder of the carb­oxy­lic acid H atoms is omitted to enhance clarity.

Figure 5

A packing plot of zymonic acid viewed down the b axis, showing the stacking along c of zigzag pleated assemblies of mol­ecules. Disorder of the carb­oxy­lic acid hydrogen atoms is omitted to enhance clarity.

Figure 6

The (8) dimer of pyruvic acid. Unlabeled atoms are related to their labeled counterparts by crystallographic inversion symmetry (1 − x, 1 − y, 1 − z).

Table 2

Hydrogen-bond geometry (Å, °) for pyruvic acid

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O2i 0.913 (14)1.742 (14)2.6536 (8)175.5 (12)

Symmetry code: (i) .

Database survey

A search of the Cambridge Crystal Structure Database (Version 5.40, Nov. 2018; Groom et al., 2016 ▸) for zymonic acid gave no hits for searches on either ‘zymonic’ or on the structural formula. A search on the structural formula of pyruvic acid gave two hits. CSD entry PRUVAC (Harata et al., 1977 ▸) describes the pure compound at 266 K, and is similar to the present pyruvic acid structure (after transformation to a common cell setting). CSD entry FAFGUR (Prohens et al., 2016 ▸) describes a co-crystal of pyruvic acid with the drug agomelatine. The CSD does contain structures for derivatives of both zymonic and pyruvic acids, but none of these have features that are especially relevant to the current work.

Synthesis and crystallization

Vacuum distillation of pyruvic acid (Sigma–Aldrich, 98.5%) was used for purification (Eugene & Guzman, 2017a ▸,b ▸). Freshly distilled pyruvic acid was crystallized in a closed vial in a freezer at 253 K. The tail of this distillation, a viscous yellowish residue enriched in parapyruvic and zymonic acids, was isolated in a vial, and the headspace filled with N2(g) before sealing it with a cap. Crystals of zymonic acid were produced slowly from this isolated residue kept at 275 K inside a refrigerator. The easily identifiable transparent crystals of zymonic acid appear above the level of the viscous solution within two weeks. Pyruvic acid crystals are deliquescent in air, even at 263 K (Harata et al., 1977 ▸), so they had to be kept cold, with minimal exposure to ambient air. Thus, throughout all experimental stages from initial inspection through data collection, special techniques for crystal handling at low temperature (Parkin & Hope, 1998 ▸) were employed.

Refinement

Crystal data, data collection, and structure refinement details are summarized in Table 3 ▸. Non-disordered hydrogen atoms were found in difference Fourier maps. For pyruvic acid, the hydroxyl hydrogen-atom coordinates were refined freely, while methyl hydrogen C—H distances used a riding model that allowed the C—H distance to refine. For zymonic acid, riding models were used for all hydrogen atoms apart from those disordered about the twofold axis, which were modeled in accordance with the recommendations of Fábry (2018 ▸). U iso(H) parameters of non-disordered hydrogens were set to either 1.2U eq or 1.5U eq (for the methyl and hydrox­yl groups, respectively) of the attached atom. To ensure stable refinement of disordered groups in the zymonic acid structure, constraints (SHELXL command EADP) were used to equalize displacement parameters of superimposed atoms.
Table 3

Experimental details

 zymonic acidpyruvic acid
Crystal data
Chemical formulaC6H6O5 C3H4O3
M r 158.1188.06
Crystal system, space groupMonoclinic, C2/c Monoclinic, P21/c
Temperature (K)9090
a, b, c (Å)24.145 (3), 6.6523 (7), 8.6201 (7)10.7486 (3), 5.1925 (2), 6.8302 (2)
β (°)95.169 (4)99.063 (1)
V3)1378.9 (3)376.45 (2)
Z 84
Radiation typeMo KαMo Kα
μ (mm−1)0.140.14
Crystal size (mm)0.30 × 0.25 × 0.020.26 × 0.22 × 0.18
 
Data collection
DiffractometerBruker D8 Venture dual sourceBruker D8 Venture dual source
Absorption correctionMulti-scan (SADABS; Krause et al., 2015)Multi-scan (SADABS; Krause et al., 2015)
T min, T max 0.721, 0.9590.890, 0.971
No. of measured, independent and observed [I > 2σ(I)] reflections18595, 1586, 139210479, 1425, 1242
R int 0.0620.025
(sin θ/λ)max−1)0.6500.796
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.037, 0.100, 1.090.031, 0.082, 1.08
No. of reflections15861425
No. of parameters10460
H-atom treatmentH atoms treated by a mixture of independent and constrained refinementH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.36, −0.240.40, −0.21

Computer programs: APEX3 (Bruker, 2016 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2018/3 (Sheldrick, 2015b ▸), XP in (Sheldrick, 2008 ▸), and CIFFIX (Parkin, 2013 ▸).

Crystal structure: contains datablock(s) global, pyruvic, zymonic. DOI: 10.1107/S2056989019007072/hb7818sup1.cif Structure factors: contains datablock(s) zymonic. DOI: 10.1107/S2056989019007072/hb7818zymonicsup2.hkl Structure factors: contains datablock(s) pyruvic. DOI: 10.1107/S2056989019007072/hb7818pyruvicsup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989019007072/hb7818zymonicsup4.cml Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989019007072/hb7818pyruvicsup5.cml CCDC references: 1916323, 1916322 Additional supporting information: crystallographic information; 3D view; checkCIF report
C6H6O5F(000) = 656
Mr = 158.11Dx = 1.523 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
a = 24.145 (3) ÅCell parameters from 9925 reflections
b = 6.6523 (7) Åθ = 3.2–27.5°
c = 8.6201 (7) ŵ = 0.14 mm1
β = 95.169 (4)°T = 90 K
V = 1378.9 (3) Å3Thin plate, colourless
Z = 80.30 × 0.25 × 0.02 mm
Bruker D8 Venture dual source diffractometer1586 independent reflections
Radiation source: microsource1392 reflections with I > 2σ(I)
Detector resolution: 5.6 pixels mm-1Rint = 0.062
φ and ω scansθmax = 27.5°, θmin = 3.2°
Absorption correction: multi-scan (SADABS; Krause et al., 2015)h = −31→31
Tmin = 0.721, Tmax = 0.959k = −8→8
18595 measured reflectionsl = −11→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: mixed
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.100w = 1/[σ2(Fo2) + (0.0428P)2 + 1.4377P] where P = (Fo2 + 2Fc2)/3
S = 1.09(Δ/σ)max = 0.001
1586 reflectionsΔρmax = 0.36 e Å3
104 parametersΔρmin = −0.24 e Å3
0 restraintsExtinction correction: SHELXL2018 (Sheldrick, 2015a), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0057 (13)
Experimental. The crystal was mounted using polyisobutene oil on the tip of a fine glass fibre, which was fastened in a copper mounting pin with electrical solder. It was placed directly into the cold gas stream of a liquid-nitrogen based cryostat (Hope, 1994; Parkin & Hope, 1998). Diffraction data were collected with the crystal at 90K, which is standard practice in this laboratory for the majority of flash-cooled crystals.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement progress was checked using Platon (Spek, 2009) and by an R-tensor (Parkin, 2000). The final model was further checked with the IUCr utility checkCIF.
xyzUiso*/UeqOcc. (<1)
C10.67036 (5)0.40914 (19)0.56905 (14)0.0170 (3)
O10.68738 (4)0.24154 (14)0.54864 (11)0.0209 (2)
C20.69378 (5)0.5659 (2)0.67706 (14)0.0178 (3)
O20.74026 (4)0.51656 (15)0.76588 (12)0.0240 (3)
H20.7525570.6181620.8155740.036*
C30.66149 (5)0.7275 (2)0.66335 (15)0.0182 (3)
H30.6675020.8495540.7195740.022*
O30.62412 (4)0.48283 (13)0.48901 (11)0.0188 (2)
C40.61371 (5)0.68442 (19)0.54353 (15)0.0186 (3)
O40.54061 (4)0.51162 (15)0.66013 (12)0.0249 (3)
H4O0.5072440.5179980.7363460.109 (14)*0.5
O50.54177 (4)0.84824 (16)0.66262 (14)0.0303 (3)
H5O0.5098660.8492280.7276100.109 (14)*0.5
C50.56056 (5)0.67919 (19)0.62725 (15)0.0188 (3)
C60.60945 (7)0.8285 (2)0.40645 (17)0.0257 (3)
H6A0.6442180.8257460.3559450.039*
H6B0.6028330.9649850.4434420.039*
H6C0.5785570.7878940.3314710.039*
U11U22U33U12U13U23
C10.0184 (6)0.0180 (6)0.0151 (6)−0.0007 (5)0.0038 (5)0.0010 (5)
O10.0238 (5)0.0173 (5)0.0213 (5)0.0015 (4)0.0010 (4)−0.0013 (4)
C20.0165 (6)0.0204 (6)0.0165 (6)−0.0023 (5)0.0016 (5)−0.0020 (5)
O20.0186 (5)0.0249 (5)0.0274 (5)0.0035 (4)−0.0050 (4)−0.0073 (4)
C30.0168 (6)0.0190 (6)0.0190 (6)−0.0032 (5)0.0020 (5)−0.0036 (5)
O30.0213 (5)0.0155 (5)0.0192 (5)0.0003 (3)−0.0013 (4)−0.0027 (3)
C40.0205 (6)0.0135 (6)0.0212 (6)−0.0007 (5)−0.0012 (5)−0.0018 (5)
O40.0225 (5)0.0207 (5)0.0314 (6)−0.0031 (4)0.0027 (4)0.0013 (4)
O50.0252 (5)0.0209 (5)0.0457 (7)0.0027 (4)0.0074 (5)−0.0040 (4)
C50.0165 (6)0.0171 (6)0.0217 (6)0.0004 (5)−0.0042 (5)−0.0001 (5)
C60.0351 (8)0.0192 (7)0.0223 (7)−0.0013 (6)−0.0008 (6)0.0026 (5)
C1—O11.2067 (16)C4—C61.5179 (19)
C1—O31.3505 (15)C4—C51.5282 (19)
C1—C21.4763 (18)O4—C51.2568 (16)
C2—C31.3268 (18)O4—H4O1.0854
C2—O21.3411 (16)O5—C51.2602 (16)
O2—H20.8400O5—H5O0.9926
C3—C41.5051 (17)C6—H6A0.9800
C3—H30.9500C6—H6B0.9800
O3—C41.4505 (15)C6—H6C0.9800
O1—C1—O3122.52 (12)O3—C4—C5108.03 (10)
O1—C1—C2128.95 (12)C3—C4—C5107.73 (11)
O3—C1—C2108.53 (11)C6—C4—C5112.41 (11)
C3—C2—O2134.75 (12)C5—O4—H4O115.0
C3—C2—C1109.12 (11)C5—O5—H5O117.2
O2—C2—C1116.12 (11)O4—C5—O5125.69 (13)
C2—O2—H2109.5O4—C5—C4118.80 (11)
C2—C3—C4108.35 (11)O5—C5—C4115.45 (11)
C2—C3—H3125.8C4—C6—H6A109.5
C4—C3—H3125.8C4—C6—H6B109.5
C1—O3—C4109.24 (10)H6A—C6—H6B109.5
O3—C4—C3104.7 (1)C4—C6—H6C109.5
O3—C4—C6109.47 (11)H6A—C6—H6C109.5
C3—C4—C6114.07 (11)H6B—C6—H6C109.5
O1—C1—C2—C3−179.25 (13)C1—O3—C4—C5−112.19 (11)
O3—C1—C2—C31.17 (15)C2—C3—C4—O3−1.69 (14)
O1—C1—C2—O2−0.3 (2)C2—C3—C4—C6−121.33 (13)
O3—C1—C2—O2−179.92 (10)C2—C3—C4—C5113.14 (12)
O2—C2—C3—C4−178.23 (14)O3—C4—C5—O412.04 (16)
C1—C2—C3—C40.39 (15)C3—C4—C5—O4−100.56 (13)
O1—C1—O3—C4178.13 (12)C6—C4—C5—O4132.92 (13)
C2—C1—O3—C4−2.26 (13)O3—C4—C5—O5−170.61 (11)
C1—O3—C4—C32.43 (13)C3—C4—C5—O576.79 (14)
C1—O3—C4—C6125.11 (12)C6—C4—C5—O5−49.72 (16)
D—H···AD—HH···AD···AD—H···A
O2—H2···O1i0.841.962.7103 (14)148
C3—H3···O2i0.952.483.0720 (16)120
O4—H4O···O4ii1.091.522.607 (2)176
O5—H5O···O5ii0.991.632.624 (2)179
C3H4O3F(000) = 184
Mr = 88.06Dx = 1.554 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 10.7486 (3) ÅCell parameters from 6955 reflections
b = 5.1925 (2) Åθ = 3.8–34.3°
c = 6.8302 (2) ŵ = 0.14 mm1
β = 99.063 (1)°T = 90 K
V = 376.45 (2) Å3Well-facetted block, colourless
Z = 40.26 × 0.22 × 0.18 mm
Bruker D8 Venture dual source diffractometer1425 independent reflections
Radiation source: microsource1242 reflections with I > 2σ(I)
Detector resolution: 5.6 pixels mm-1Rint = 0.025
φ and ω scansθmax = 34.5°, θmin = 3.8°
Absorption correction: multi-scan (SADABS; Krause et al., 2015)h = −16→16
Tmin = 0.890, Tmax = 0.971k = −7→8
10479 measured reflectionsl = −10→10
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.031Hydrogen site location: mixed
wR(F2) = 0.082H atoms treated by a mixture of independent and constrained refinement
S = 1.08w = 1/[σ2(Fo2) + (0.0299P)2 + 0.1264P] where P = (Fo2 + 2Fc2)/3
1425 reflections(Δ/σ)max < 0.001
60 parametersΔρmax = 0.40 e Å3
0 restraintsΔρmin = −0.21 e Å3
Experimental. The crystal was mounted using polyisobutene oil on the tip of a fine glass fibre, which was fastened in a copper mounting pin with electrical solder. It was placed directly into the cold gas stream of a liquid-nitrogen based cryostat (Parkin & Hope, 1998). Diffraction data were collected with the crystal at 90K, which is standard practice in this laboratory for the majority of flash-cooled crystals.
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement progress was checked using Platon (Spek, 2009) and by an R-tensor (Parkin, 2000). The final model was further checked with the IUCr utility checkCIF.
xyzUiso*/Ueq
O10.41673 (5)0.30370 (12)0.30191 (9)0.01968 (14)
H10.4903 (13)0.320 (3)0.3883 (19)0.030*
C10.33963 (6)0.48448 (14)0.34005 (11)0.01316 (14)
O20.36317 (5)0.65673 (11)0.46175 (8)0.01589 (13)
C20.20853 (6)0.46732 (14)0.21028 (10)0.01271 (14)
C30.11464 (7)0.65949 (15)0.25725 (11)0.01520 (15)
H3A0.1499 (3)0.8314 (12)0.255 (1)0.023*
H3B0.0940 (5)0.6245 (9)0.388 (1)0.023*
H3C0.0389 (6)0.6478 (9)0.1594 (9)0.023*
O30.18824 (5)0.30508 (11)0.08250 (9)0.01774 (14)
U11U22U33U12U13U23
O10.0132 (2)0.0218 (3)0.0222 (3)0.0041 (2)−0.0027 (2)−0.0084 (2)
C10.0121 (3)0.0138 (3)0.0136 (3)−0.0002 (2)0.0018 (2)0.0003 (2)
O20.0135 (2)0.0155 (3)0.0176 (3)−0.00038 (19)−0.00071 (19)−0.0034 (2)
C20.0119 (3)0.0139 (3)0.0121 (3)−0.0011 (2)0.0010 (2)0.0009 (2)
C30.0140 (3)0.0163 (3)0.0148 (3)0.0023 (2)0.0008 (2)−0.0013 (3)
O30.0167 (3)0.0181 (3)0.0173 (3)−0.0002 (2)−0.0008 (2)−0.0049 (2)
O1—C11.3053 (9)C2—C31.4896 (10)
O1—H10.913 (14)C3—H3A0.971 (6)
C1—O21.2201 (9)C3—H3B0.971 (6)
C1—C21.5446 (10)C3—H3C0.971 (6)
C2—O31.2079 (9)
C1—O1—H1108.4 (8)C2—C3—H3A109.5
O2—C1—O1126.37 (7)C2—C3—H3B109.5
O2—C1—C2120.38 (6)H3A—C3—H3B109.5
O1—C1—C2113.24 (6)C2—C3—H3C109.5
O3—C2—C3124.85 (7)H3A—C3—H3C109.5
O3—C2—C1119.96 (7)H3B—C3—H3C109.5
C3—C2—C1115.19 (6)
O2—C1—C2—O3175.81 (7)O2—C1—C2—C3−4.59 (10)
O1—C1—C2—O3−3.34 (10)O1—C1—C2—C3176.26 (6)
D—H···AD—HH···AD···AD—H···A
O1—H1···O2i0.913 (14)1.742 (14)2.6536 (8)175.5 (12)
  14 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Reactivity of Ketyl and Acetyl Radicals from Direct Solar Actinic Photolysis of Aqueous Pyruvic Acid.

Authors:  Alexis J Eugene; Marcelo I Guzman
Journal:  J Phys Chem A       Date:  2017-04-06       Impact factor: 2.781

3.  Computational Prediction of Electron Ionization Mass Spectra to Assist in GC/MS Compound Identification.

Authors:  Felicity Allen; Allison Pon; Russ Greiner; David Wishart
Journal:  Anal Chem       Date:  2016-07-21       Impact factor: 6.986

4.  HMDB 3.0--The Human Metabolome Database in 2013.

Authors:  David S Wishart; Timothy Jewison; An Chi Guo; Michael Wilson; Craig Knox; Yifeng Liu; Yannick Djoumbou; Rupasri Mandal; Farid Aziat; Edison Dong; Souhaila Bouatra; Igor Sinelnikov; David Arndt; Jianguo Xia; Philip Liu; Faizath Yallou; Trent Bjorndahl; Rolando Perez-Pineiro; Roman Eisner; Felicity Allen; Vanessa Neveu; Russ Greiner; Augustin Scalbert
Journal:  Nucleic Acids Res       Date:  2012-11-17       Impact factor: 16.971

5.  HMDB: the Human Metabolome Database.

Authors:  David S Wishart; Dan Tzur; Craig Knox; Roman Eisner; An Chi Guo; Nelson Young; Dean Cheng; Kevin Jewell; David Arndt; Summit Sawhney; Chris Fung; Lisa Nikolai; Mike Lewis; Marie-Aude Coutouly; Ian Forsythe; Peter Tang; Savita Shrivastava; Kevin Jeroncic; Paul Stothard; Godwin Amegbey; David Block; David D Hau; James Wagner; Jessica Miniaci; Melisa Clements; Mulu Gebremedhin; Natalie Guo; Ying Zhang; Gavin E Duggan; Glen D Macinnis; Alim M Weljie; Reza Dowlatabadi; Fiona Bamforth; Derrick Clive; Russ Greiner; Liang Li; Tom Marrie; Brian D Sykes; Hans J Vogel; Lori Querengesser
Journal:  Nucleic Acids Res       Date:  2007-01       Impact factor: 16.971

6.  Comparison of silver and molybdenum microfocus X-ray sources for single-crystal structure determination.

Authors:  Lennard Krause; Regine Herbst-Irmer; George M Sheldrick; Dietmar Stalke
Journal:  J Appl Crystallogr       Date:  2015-01-30       Impact factor: 3.304

7.  SHELXT - integrated space-group and crystal-structure determination.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A Found Adv       Date:  2015-01-01       Impact factor: 2.290

8.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

9.  HMDB: a knowledgebase for the human metabolome.

Authors:  David S Wishart; Craig Knox; An Chi Guo; Roman Eisner; Nelson Young; Bijaya Gautam; David D Hau; Nick Psychogios; Edison Dong; Souhaila Bouatra; Rupasri Mandal; Igor Sinelnikov; Jianguo Xia; Leslie Jia; Joseph A Cruz; Emilia Lim; Constance A Sobsey; Savita Shrivastava; Paul Huang; Philip Liu; Lydia Fang; Jun Peng; Ryan Fradette; Dean Cheng; Dan Tzur; Melisa Clements; Avalyn Lewis; Andrea De Souza; Azaret Zuniga; Margot Dawe; Yeping Xiong; Derrick Clive; Russ Greiner; Alsu Nazyrova; Rustem Shaykhutdinov; Liang Li; Hans J Vogel; Ian Forsythe
Journal:  Nucleic Acids Res       Date:  2008-10-25       Impact factor: 16.971

10.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
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