| Literature DB >> 31391958 |
Cemile Baydere1, Merve Taşçı2, Necmi Dege1, Mustafa Arslan2, Yusuf Atalay2, Irina A Golenya3.
Abstract
A novel chalcone, C20H20O, derived from benzyl-idene-tetra-lone, was synthesized via Claissen-Schmidt condensation between tetra-lone and 2,4,6-tri-methyl-benzaldehyde. In the crystal, mol-ecules are linked by C-H⋯O hydrogen bonds, producing R 2 2(20) and R 2 4(12) ring motifs. In addition, weak C-H⋯π and π-stacking inter-actions are observed. The inter-molecular inter-actions were investigated using Hirshfeld surface analysis and two-dimensional fingerprint plots, revealing that the most important contributions for the crystal packing are from H⋯H (66.0%), H⋯C/ C⋯H (22.3%), H⋯O/O⋯H (9.3%), and C⋯C (2.4%) inter-actions. Shape-index plots show π-π stacking inter-actions and the curvedness plots show flat surface patches characteristic of planar stacking.Entities:
Keywords: Hirshfeld surface analysis; chalcone; crystal structure; hydrogen bond
Year: 2019 PMID: 31391958 PMCID: PMC6658959 DOI: 10.1107/S2056989019006182
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of the title compound, with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °)
Cg2 is the centroid of the C2–C7 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C16—H16⋯O1i | 0.93 | 2.69 | 3.493 (5) | 145 |
| C20—H20 | 0.96 | 2.60 | 3.535 (5) | 165 |
| C9—H9 | 0.97 | 2.90 | 3.865 (6) | 175 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2A view along the a axis of the title structure. Blue dashed lines denote the C—H⋯O hydrogen bonds which form (20) and (12) ring motifs. C—H⋯π interactions are shown as green dashes lines.
Experimental details
| Crystal data | |
| Chemical formula | C20H20O |
|
| 276.36 |
| Crystal system, space group | Triclinic, |
| Temperature (K) | 293 |
|
| 8.728 (2), 8.757 (2), 12.094 (3) |
| α, β, γ (°) | 77.768 (19), 80.822 (19), 61.929 (18) |
|
| 795.2 (4) |
|
| 2 |
| Radiation type | Mo |
| μ (mm−1) | 0.07 |
| Crystal size (mm) | 0.64 × 0.51 × 0.33 |
| Data collection | |
| Diffractometer | Stoe IPDS 2 |
| Absorption correction | Integration ( |
|
| 0.956, 0.982 |
| No. of measured, independent and observed [ | 8143, 2726, 1102 |
|
| 0.088 |
| (sin θ/λ)max (Å−1) | 0.595 |
| Refinement | |
|
| 0.061, 0.155, 0.91 |
| No. of reflections | 2726 |
| No. of parameters | 194 |
| H-atom treatment | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.25, −0.14 |
Computer programs: X-AREA and X-RED (Stoe & Cie, 2002 ▸), SHELXT2017 (Sheldrick, 2015a ▸), SHELXL2018 (Sheldrick, 2015b ▸), Mercury (Macrae et al., 2008 ▸), WinGX (Farrugia, 2012 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).
Figure 3(a) d mapped on Hirshfeld surfaces for visualizing the intermolecular interactions; (b) shape-index map and (c) curvedness map of the title compound.
Figure 4d mapped on Hirshfeld surfaces for visualizing the intermolecular interactions.
Figure 5(a) The overall two-dimensional fingerprint plot and (b) Hirshfeld surface representations with the function d norm plotted onto the surface for (i) H⋯H, (ii) H⋯C/C⋯H, (iii) H⋯O/O⋯H and (iv) C⋯C interactions. (c) The two-dimensional fingerprint plots for the title compound, delineated into (i) H⋯H, (ii) H⋯C/ C⋯H, (iii) H⋯O/O⋯H, (iv) C⋯C interactions.
| C20H20O | |
| Triclinic, | |
| Mo | |
| Cell parameters from 12610 reflections | |
| θ = 2.7–30.2° | |
| α = 77.768 (19)° | µ = 0.07 mm−1 |
| β = 80.822 (19)° | |
| γ = 61.929 (18)° | Prism, colorless |
| 0.64 × 0.51 × 0.33 mm |
| Stoe IPDS 2 diffractometer | 1102 reflections with |
| Detector resolution: 6.67 pixels mm-1 | |
| rotation method scans | θmax = 25.0°, θmin = 2.7° |
| Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | |
| 8143 measured reflections | |
| 2726 independent reflections |
| Refinement on | Hydrogen site location: inferred from neighbouring sites |
| Least-squares matrix: full | H-atom parameters constrained |
| (Δ/σ)max < 0.001 | |
| Δρmax = 0.25 e Å−3 | |
| 2726 reflections | Δρmin = −0.14 e Å−3 |
| 194 parameters | Extinction correction: SHELXL2018 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
| 0 restraints | Extinction coefficient: 0.016 (4) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| O1 | −1.0524 (3) | −0.2385 (4) | −0.7862 (2) | 0.0977 (9) | |
| C12 | −0.4930 (4) | −0.5186 (5) | −0.8354 (3) | 0.0635 (9) | |
| C2 | −1.0387 (4) | −0.2214 (4) | −0.5971 (3) | 0.0639 (9) | |
| C17 | −0.4278 (4) | −0.6907 (5) | −0.8516 (3) | 0.0705 (10) | |
| C1 | −0.9638 (4) | −0.2867 (5) | −0.7056 (3) | 0.0715 (10) | |
| C10 | −0.7746 (4) | −0.4083 (4) | −0.7133 (3) | 0.0695 (10) | |
| C13 | −0.3805 (5) | −0.4437 (5) | −0.8456 (3) | 0.0744 (10) | |
| C11 | −0.6837 (4) | −0.4120 (4) | −0.8119 (3) | 0.0736 (11) | |
| H11 | −0.745928 | −0.339613 | −0.873942 | 0.088* | |
| C15 | −0.1364 (4) | −0.7151 (5) | −0.8870 (3) | 0.0711 (10) | |
| C7 | −0.9379 (4) | −0.2800 (5) | −0.5040 (3) | 0.0743 (10) | |
| C16 | −0.2502 (5) | −0.7860 (5) | −0.8766 (3) | 0.0762 (11) | |
| H16 | −0.206551 | −0.902035 | −0.886559 | 0.091* | |
| C14 | −0.2038 (5) | −0.5443 (5) | −0.8704 (3) | 0.0798 (11) | |
| H14 | −0.128920 | −0.494447 | −0.875919 | 0.096* | |
| C3 | −1.2113 (4) | −0.0905 (5) | −0.5883 (3) | 0.0792 (11) | |
| H3 | −1.280000 | −0.051417 | −0.649452 | 0.095* | |
| C9 | −0.7027 (5) | −0.5193 (6) | −0.6044 (3) | 0.1051 (15) | |
| H9A | −0.745452 | −0.606334 | −0.583241 | 0.126* | |
| H9B | −0.576855 | −0.580756 | −0.615353 | 0.126* | |
| C8 | −0.7503 (4) | −0.4167 (5) | −0.5111 (3) | 0.0951 (13) | |
| H8A | −0.676588 | −0.358974 | −0.520287 | 0.114* | |
| H8B | −0.726257 | −0.496759 | −0.439895 | 0.114* | |
| C4 | −1.2801 (5) | −0.0192 (5) | −0.4895 (4) | 0.0909 (13) | |
| H4 | −1.394381 | 0.067973 | −0.484398 | 0.109* | |
| C6 | −1.0115 (5) | −0.2062 (6) | −0.4058 (3) | 0.0942 (13) | |
| H6 | −0.945571 | −0.244732 | −0.343260 | 0.113* | |
| C5 | −1.1799 (6) | −0.0771 (6) | −0.4000 (4) | 0.0988 (14) | |
| H5 | −1.226312 | −0.028553 | −0.333787 | 0.119* | |
| C20 | 0.0576 (4) | −0.8225 (6) | −0.9157 (3) | 0.1039 (15) | |
| H20A | 0.094884 | −0.940932 | −0.877619 | 0.156* | |
| H20B | 0.121224 | −0.772547 | −0.891430 | 0.156* | |
| H20C | 0.078722 | −0.821651 | −0.996162 | 0.156* | |
| C18 | −0.5449 (5) | −0.7765 (5) | −0.8436 (4) | 0.1077 (15) | |
| H18A | −0.589023 | −0.792507 | −0.766309 | 0.162* | |
| H18B | −0.479794 | −0.888378 | −0.868695 | 0.162* | |
| H18C | −0.640231 | −0.703345 | −0.890605 | 0.162* | |
| C19 | −0.4477 (5) | −0.2554 (5) | −0.8281 (4) | 0.1150 (16) | |
| H19A | −0.531484 | −0.178397 | −0.882365 | 0.173* | |
| H19B | −0.352349 | −0.226633 | −0.838182 | 0.173* | |
| H19C | −0.501571 | −0.241994 | −0.752796 | 0.173* |
| O1 | 0.0782 (16) | 0.112 (2) | 0.088 (2) | −0.0233 (15) | −0.0269 (14) | −0.0175 (16) |
| C12 | 0.069 (2) | 0.057 (2) | 0.060 (2) | −0.0271 (19) | −0.0034 (16) | −0.0044 (18) |
| C2 | 0.061 (2) | 0.066 (2) | 0.066 (2) | −0.0311 (19) | −0.0055 (18) | −0.0045 (19) |
| C17 | 0.079 (2) | 0.061 (3) | 0.073 (3) | −0.032 (2) | −0.0094 (18) | −0.0086 (19) |
| C1 | 0.073 (2) | 0.071 (3) | 0.069 (3) | −0.031 (2) | −0.019 (2) | −0.001 (2) |
| C10 | 0.062 (2) | 0.070 (3) | 0.062 (2) | −0.0218 (19) | −0.0091 (18) | 0.0017 (19) |
| C13 | 0.082 (3) | 0.058 (3) | 0.081 (3) | −0.032 (2) | 0.0010 (19) | −0.014 (2) |
| C11 | 0.072 (2) | 0.072 (3) | 0.072 (3) | −0.029 (2) | −0.0174 (19) | −0.001 (2) |
| C15 | 0.077 (2) | 0.070 (3) | 0.058 (2) | −0.026 (2) | −0.0030 (18) | −0.012 (2) |
| C7 | 0.071 (2) | 0.084 (3) | 0.067 (2) | −0.037 (2) | −0.005 (2) | −0.006 (2) |
| C16 | 0.095 (3) | 0.059 (3) | 0.069 (2) | −0.028 (2) | −0.010 (2) | −0.0122 (19) |
| C14 | 0.082 (3) | 0.081 (3) | 0.085 (3) | −0.045 (2) | 0.0018 (19) | −0.015 (2) |
| C3 | 0.069 (2) | 0.077 (3) | 0.091 (3) | −0.032 (2) | −0.013 (2) | −0.008 (2) |
| C9 | 0.092 (3) | 0.101 (3) | 0.079 (3) | −0.013 (2) | −0.015 (2) | 0.003 (3) |
| C8 | 0.080 (3) | 0.099 (3) | 0.081 (3) | −0.018 (2) | −0.024 (2) | −0.003 (3) |
| C4 | 0.076 (3) | 0.085 (3) | 0.102 (3) | −0.030 (2) | 0.008 (3) | −0.022 (3) |
| C6 | 0.095 (3) | 0.109 (3) | 0.072 (3) | −0.040 (3) | −0.010 (2) | −0.012 (3) |
| C5 | 0.101 (3) | 0.107 (4) | 0.085 (3) | −0.045 (3) | 0.008 (3) | −0.025 (3) |
| C20 | 0.076 (3) | 0.113 (4) | 0.098 (3) | −0.020 (2) | 0.003 (2) | −0.030 (3) |
| C18 | 0.114 (3) | 0.093 (3) | 0.141 (4) | −0.065 (3) | −0.010 (3) | −0.023 (3) |
| C19 | 0.107 (3) | 0.073 (3) | 0.172 (5) | −0.044 (2) | 0.007 (3) | −0.038 (3) |
| O1—C1 | 1.218 (4) | C3—C4 | 1.383 (5) |
| C12—C17 | 1.384 (4) | C3—H3 | 0.9300 |
| C12—C13 | 1.393 (4) | C9—C8 | 1.477 (5) |
| C12—C11 | 1.491 (4) | C9—H9A | 0.9700 |
| C2—C7 | 1.396 (5) | C9—H9B | 0.9700 |
| C2—C3 | 1.404 (4) | C8—H8A | 0.9700 |
| C2—C1 | 1.473 (4) | C8—H8B | 0.9700 |
| C17—C16 | 1.390 (4) | C4—C5 | 1.359 (5) |
| C17—C18 | 1.510 (5) | C4—H4 | 0.9300 |
| C1—C10 | 1.486 (4) | C6—C5 | 1.371 (5) |
| C10—C11 | 1.319 (4) | C6—H6 | 0.9300 |
| C10—C9 | 1.490 (5) | C5—H5 | 0.9300 |
| C13—C14 | 1.389 (4) | C20—H20A | 0.9600 |
| C13—C19 | 1.519 (5) | C20—H20B | 0.9600 |
| C11—H11 | 0.9300 | C20—H20C | 0.9600 |
| C15—C14 | 1.373 (5) | C18—H18A | 0.9600 |
| C15—C16 | 1.377 (5) | C18—H18B | 0.9600 |
| C15—C20 | 1.524 (4) | C18—H18C | 0.9600 |
| C7—C6 | 1.390 (5) | C19—H19A | 0.9600 |
| C7—C8 | 1.508 (5) | C19—H19B | 0.9600 |
| C16—H16 | 0.9300 | C19—H19C | 0.9600 |
| C14—H14 | 0.9300 | ||
| C17—C12—C13 | 119.7 (3) | C10—C9—H9A | 109.0 |
| C17—C12—C11 | 120.0 (3) | C8—C9—H9B | 109.0 |
| C13—C12—C11 | 120.3 (3) | C10—C9—H9B | 109.0 |
| C7—C2—C3 | 119.0 (3) | H9A—C9—H9B | 107.8 |
| C7—C2—C1 | 121.2 (3) | C9—C8—C7 | 114.6 (4) |
| C3—C2—C1 | 119.8 (4) | C9—C8—H8A | 108.6 |
| C12—C17—C16 | 119.0 (3) | C7—C8—H8A | 108.6 |
| C12—C17—C18 | 121.7 (3) | C9—C8—H8B | 108.6 |
| C16—C17—C18 | 119.3 (4) | C7—C8—H8B | 108.6 |
| O1—C1—C2 | 121.3 (3) | H8A—C8—H8B | 107.6 |
| O1—C1—C10 | 121.8 (3) | C5—C4—C3 | 119.6 (4) |
| C2—C1—C10 | 116.9 (4) | C5—C4—H4 | 120.2 |
| C11—C10—C1 | 119.9 (3) | C3—C4—H4 | 120.2 |
| C11—C10—C9 | 125.0 (3) | C5—C6—C7 | 120.9 (4) |
| C1—C10—C9 | 115.1 (3) | C5—C6—H6 | 119.6 |
| C14—C13—C12 | 119.3 (3) | C7—C6—H6 | 119.6 |
| C14—C13—C19 | 119.7 (4) | C4—C5—C6 | 121.0 (4) |
| C12—C13—C19 | 121.1 (3) | C4—C5—H5 | 119.5 |
| C10—C11—C12 | 127.7 (3) | C6—C5—H5 | 119.5 |
| C10—C11—H11 | 116.2 | C15—C20—H20A | 109.5 |
| C12—C11—H11 | 116.2 | C15—C20—H20B | 109.5 |
| C14—C15—C16 | 117.6 (3) | H20A—C20—H20B | 109.5 |
| C14—C15—C20 | 121.2 (4) | C15—C20—H20C | 109.5 |
| C16—C15—C20 | 121.2 (4) | H20A—C20—H20C | 109.5 |
| C6—C7—C2 | 118.9 (3) | H20B—C20—H20C | 109.5 |
| C6—C7—C8 | 120.4 (4) | C17—C18—H18A | 109.5 |
| C2—C7—C8 | 120.6 (3) | C17—C18—H18B | 109.5 |
| C15—C16—C17 | 122.4 (4) | H18A—C18—H18B | 109.5 |
| C15—C16—H16 | 118.8 | C17—C18—H18C | 109.5 |
| C17—C16—H16 | 118.8 | H18A—C18—H18C | 109.5 |
| C15—C14—C13 | 122.0 (4) | H18B—C18—H18C | 109.5 |
| C15—C14—H14 | 119.0 | C13—C19—H19A | 109.5 |
| C13—C14—H14 | 119.0 | C13—C19—H19B | 109.5 |
| C4—C3—C2 | 120.6 (4) | H19A—C19—H19B | 109.5 |
| C4—C3—H3 | 119.7 | C13—C19—H19C | 109.5 |
| C2—C3—H3 | 119.7 | H19A—C19—H19C | 109.5 |
| C8—C9—C10 | 112.8 (4) | H19B—C19—H19C | 109.5 |
| C8—C9—H9A | 109.0 | ||
| C13—C12—C17—C16 | 0.7 (5) | C3—C2—C7—C8 | −178.2 (3) |
| C11—C12—C17—C16 | 178.2 (3) | C1—C2—C7—C8 | −2.0 (5) |
| C13—C12—C17—C18 | −178.9 (3) | C14—C15—C16—C17 | 0.8 (5) |
| C11—C12—C17—C18 | −1.3 (5) | C20—C15—C16—C17 | −179.4 (3) |
| C7—C2—C1—O1 | 178.4 (4) | C12—C17—C16—C15 | −0.7 (5) |
| C3—C2—C1—O1 | −5.3 (5) | C18—C17—C16—C15 | 178.9 (3) |
| C7—C2—C1—C10 | −3.8 (5) | C16—C15—C14—C13 | −1.0 (5) |
| C3—C2—C1—C10 | 172.5 (3) | C20—C15—C14—C13 | 179.2 (3) |
| O1—C1—C10—C11 | 27.7 (6) | C12—C13—C14—C15 | 1.0 (5) |
| C2—C1—C10—C11 | −150.1 (3) | C19—C13—C14—C15 | −179.9 (4) |
| O1—C1—C10—C9 | −152.2 (4) | C7—C2—C3—C4 | 0.7 (5) |
| C2—C1—C10—C9 | 30.0 (5) | C1—C2—C3—C4 | −175.6 (3) |
| C17—C12—C13—C14 | −0.8 (5) | C11—C10—C9—C8 | 129.8 (4) |
| C11—C12—C13—C14 | −178.4 (3) | C1—C10—C9—C8 | −50.3 (5) |
| C17—C12—C13—C19 | −179.9 (4) | C10—C9—C8—C7 | 43.9 (5) |
| C11—C12—C13—C19 | 2.6 (5) | C6—C7—C8—C9 | 163.5 (4) |
| C1—C10—C11—C12 | 177.2 (3) | C2—C7—C8—C9 | −18.7 (6) |
| C9—C10—C11—C12 | −2.9 (7) | C2—C3—C4—C5 | −0.4 (6) |
| C17—C12—C11—C10 | 83.3 (5) | C2—C7—C6—C5 | −0.3 (6) |
| C13—C12—C11—C10 | −99.2 (5) | C8—C7—C6—C5 | 177.5 (4) |
| C3—C2—C7—C6 | −0.4 (5) | C3—C4—C5—C6 | −0.3 (7) |
| C1—C2—C7—C6 | 175.9 (3) | C7—C6—C5—C4 | 0.7 (7) |
| H··· | ||||
| C16—H16···O1i | 0.93 | 2.69 | 3.493 (5) | 145 |
| C20—H20 | 0.96 | 2.60 | 3.535 (5) | 165 |
| C9—H9 | 0.97 | 2.90 | 3.865 (6) | 175 |