Literature DB >> 31391956

Crystal structure of 1-anilino-5-methyl-1H-1,2,3-triazole-4-carb-oxy-lic acid monohydrate.

Olívia B O Moreira1, Maria Clara R Freitas2, Karynne C Souza3, Alessandro K Jordão4, Jackson A L C Resende3.   

Abstract

In the mol-ecular structure of the title compound, C10H10N4O2·H2O, the angle between the triazole and arene rings is 87.39 (5)°. The water of crystallization connects the mol-ecules in the crystal packing. The crystal structure exhibits N-H⋯O, O-H⋯O and O-H⋯N inter-actions, resulting in the formation of a three-dimensional framework. The inter-molecular inter-actions were identified and qu-anti-fied using Hirshfeld surface analysis.

Entities:  

Keywords:  Hirshfeld surface analysis.; crystal packing; crystal structure; hydrogen bonding; triazole compounds

Year:  2019        PMID: 31391956      PMCID: PMC6658979          DOI: 10.1107/S2056989019005711

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Triazoles are a class of compounds that have aroused chemical inter­est because of their wide range of applications, including their biological relevance and the development of new materials. Triazoles have potent anti­fungal activity, being an important class of drugs (Peyton et al., 2015 ▸). Their anti­tubercular (Zhang et al., 2017 ▸), anti­cancer (Teixeira et al., 2019 ▸), anti­microbial (Yadav et al., 2018 ▸) and anti­viral (Jordão et al., 2009 ▸) activities have also been evaluated. This class of compounds has also aroused inter­est in materials chemistry, mainly in the development of systems with uptake capacity for both CO2 and H2 (Mukherjee et al., 2019 ▸).

Structural commentary

The title mol­ecule (Fig. 1 ▸) is formed by planar aniline and triazolic rings, which subtend a dihedral angle of 87.41 (5)°. Atoms O1 and O2 are located 0.237 (2) and 0.208 (2) Å, respectively, outside the plane of the triazole ring. The methyl group exhibits occupational disorder of the hydrogen atoms.
Figure 1

The mol­ecular structure of the title compound with anisotropic atomic displacement ellipsoids shown at the 50% probability level.

Supra­molecular features

The crystal packing is stabilized by N—H⋯O, O—H⋯N and O—H⋯O hydrogen bonds between the water mol­ecule and the organic mol­ecule. The supra­molecular arrangement is formed by four hydrogen bonds (Table 1 ▸): (A) N4—H4⋯O1W ii, (B) O1—H1⋯O1W i, (C) O1W—H1WA⋯O2iii and (D) O1W—H1WB⋯N1. Separately, these hydrogen bonds do not form nets in the structure. However, when combined, they generate inter­esting supra­molecular systems. The combination of the (A:B), (B:C) and (B:D) inter­actions result in inter­molecular rings with (18), (12) and (14) motifs, respectively. Representations of the (12) and (14) motifs are illustrated in Fig. 2 ▸). A (9) motif is observed along [10] (A:C inter­actions) (Fig. 3a ▸), a (7) motif along [010] (A:D inter­actions) (Fig. 3b ▸) and a (7) motif along [100] (C:D inter­actions).
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O1—H1⋯O1W i 0.94 (2)1.68 (3)2.6030 (19)167 (2)
N4—H4⋯O1W ii 0.91 (2)2.22 (2)3.111 (2)169.2 (19)
O1W—H1WA⋯O2iii 0.82 (3)1.99 (3)2.773 (2)159 (2)
O1W—H1WB⋯N10.92 (3)1.88 (3)2.800 (2)172 (2)

Symmetry codes: (i) ; (ii) ; (iii) .

Figure 2

A partial packing diagram showing the hydrogen-bond network along the a axis and the (12) (green) and (14) (yellow) motifs. All hydrogen atoms bonded to carbon are omitted for clarity.

Figure 3

Views along the c axis showing the layers consolidated by the hydrogen-bond network: (a) a (7) chain along the b-axis direction and (b) a (9) chain along [10]. All hydrogen atoms bonded to carbon are omitted for clarity.

Hirshfeld surface analysis

For an unequivocal description of the supra­molecular system, Hirshfeld Surface (HS) analysis was performed. The isosurface was plotted for the weight function equal to 0.5. The red areas in Fig. 4 ▸ correspond to short contacts between atoms inside and outside the surface atom, d i and d e. There are three spots on the surface, and in the corresponding fingerprint plot (FPP; Fig. 5 ▸), they are represented as sharp spikes. Chemically, they correspond to classical hydrogen bonds. Two of these involve inter­actions between the carboxyl group and the water mol­ecule while the third is the inter­action between N-triazole and the water mol­ecule. These hydrogen bonds are the shortest contacts, assigned in the FPP as O⋯H and N⋯H. The N⋯H inter­action contributes 15.8% to the HS, while the O⋯H inter­action corresponds to 18.1%. The majority of the inter­actions are H⋯H, being equal to 36.0%.
Figure 4

Hirshfeld surface mapped with d norm.

Figure 5

The fingerprint plots for the title compound.

Database survey

A research of the Cambridge Structural Database (CSD version 5.40, update of November 2018; Groom et al., 2016 ▸) for N-phenyl-1H-1,2,3-triazol-1-amine derivatives gave 18 hits for structures that include atomic coordinates. These results include alcohols, esters and a carbohydrazide. The mol­ecular structures of these compounds show dihedral angles between the triazole and aniline rings in the range 76 to 89°. These values are affected by the hydrogen bonds in the crystal packing. In addition, in studies of halogenated phenyl derivatives, differences in C—H⋯π inter­actions were shown to result in changes in the crystal packing (Jordão et al., 2012 ▸).

Vibrational spectrum

Fig. 6 ▸ shows the IR spectrum measured in ATR mode (νmax, cm−1) which exhibits the following characteristic bands: 3205 (N—H stretching); 2984 (methyl C—H stretching); 1725 (C=O stretching); 1600 (>C=N stretching); 1496 (aromatic C=C stretching); 1348 (C—N stretching of triazole); 1208 (C—O stretching) for the esther and 3431 (OH stretching); 3268 (N—H stretching); 1695 (C=O stretching); 1589 (>C=N stretching); 1496 (aromatic C=C stretching); 1381 (C—N stretching of triazole); 1259 (C—O stretching) for the acid.
Figure 6

IR spectrum of the title compound.

Synthesis and crystallization

The title compound was synthesized by the alkaline hydrolysis of 5-methyl-1-(phenyl­amino)-1H-[1,2,3]-triazole-4-carb­oxy­lic acid ethyl ester (Jordão et al., 2009 ▸), 1. 3.6 mmol of 1 were dissolved in 30.0 ml of a sodium hydroxide solution (0.1 mol L−1) (NaOH, VETEC). This mixture was refluxed at 373 K for about 48 h. The product was neutralized using dilute hydro­chloric acid (HCl, VETEC), filtered and dried in vacuo. The title compound was dissolved in methanol and kept at room temperature. After a few days, colourless block-shaped crystals, suitable for X-ray analysis, were obtained by slow evaporation (yield 83%). 1H NMR (500 MHz, C2D6OS): 10.218 (1H, s), 9.887 (1H, s), 7.215 (2H, m), 6.872 (1H, m), 6.390(2H, d, J = 3Hz), 3.295 (1H, s).

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▸. All H atoms were located in a difference-Fourier map and freely refined except for hydrogen atoms bound to C10 which are disordered (occupancy 0.5) and were refined using a riding model with C—H = 0.96 Å and U iso(H) = 1.5U eq(C).
Table 2

Experimental details

Crystal data
Chemical formulaC10H10N4O2·H2O
M r 236.24
Crystal system, space groupMonoclinic, P21/c
Temperature (K)298
a, b, c (Å)7.2288 (14), 6.8265 (14), 23.922 (5)
β (°)98.69 (3)
V3)1167.0 (4)
Z 4
Radiation typeMo Kα
μ (mm−1)0.10
Crystal size (mm)0.24 × 0.20 × 0.06
 
Data collection
DiffractometerBruker KappaCCD
Absorption correctionMulti-scan (SADABS; Bruker, 2008)
T min, T max 0.701, 0.745
No. of measured, independent and observed [I > 2σ(I)] reflections11378, 2207, 1559
R int 0.042
(sin θ/λ)max−1)0.609
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.041, 0.100, 1.04
No. of reflections2207
No. of parameters191
H-atom treatmentH atoms treated by a mixture of independent and constrained refinement
Δρmax, Δρmin (e Å−3)0.18, −0.15

Computer programs: COLLECT (Bruker, 2004 ▸), DIRAX/LSQ (Duisenberg, 1992 ▸), EVALCCD (Duisenberg et al., 2003 ▸), SHELXT (Sheldrick, 2015a ▸), SHELXL2016 (Sheldrick, 2015b ▸), OLEX2 (Dolomanov et al., 2009 ▸) and Mercury (Macrae et al., 2008 ▸).

Crystal structure: contains datablock(s) I. DOI: 10.1107/S2056989019005711/ex2020sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989019005711/ex2020Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989019005711/ex2020Isup3.cml CCDC reference: 1912546 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H10N4O2·H2OF(000) = 496
Mr = 236.24Dx = 1.345 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 7.2288 (14) ÅCell parameters from 11378 reflections
b = 6.8265 (14) Åθ = 3.1–25.2°
c = 23.922 (5) ŵ = 0.10 mm1
β = 98.69 (3)°T = 298 K
V = 1167.0 (4) Å3Block, colourless
Z = 40.24 × 0.20 × 0.06 mm
Bruker KappaCCD diffractometer2207 independent reflections
Horizonally mounted graphite crystal monochromator1559 reflections with I > 2σ(I)
Detector resolution: 9 pixels mm-1Rint = 0.042
CCD scansθmax = 25.7°, θmin = 3.1°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −8→8
Tmin = 0.701, Tmax = 0.745k = −8→7
11378 measured reflectionsl = −28→29
Refinement on F2Hydrogen site location: mixed
Least-squares matrix: fullH atoms treated by a mixture of independent and constrained refinement
R[F2 > 2σ(F2)] = 0.041w = 1/[σ2(Fo2) + (0.0451P)2 + 0.2317P] where P = (Fo2 + 2Fc2)/3
wR(F2) = 0.100(Δ/σ)max < 0.001
S = 1.04Δρmax = 0.18 e Å3
2207 reflectionsΔρmin = −0.15 e Å3
191 parametersExtinction correction: SHELXL2016 (Sheldrick, 2015b), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
0 restraintsExtinction coefficient: 0.016 (3)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
N10.1134 (2)0.5773 (2)0.07579 (6)0.0470 (4)
N20.1952 (2)0.4253 (2)0.10201 (7)0.0490 (4)
N30.0553 (2)0.3016 (2)0.11042 (6)0.0408 (4)
N40.0956 (2)0.1211 (2)0.13675 (6)0.0456 (4)
O1−0.11452 (18)0.8386 (2)0.01606 (6)0.0548 (4)
O2−0.37050 (18)0.6983 (2)0.03987 (6)0.0626 (4)
C1−0.2030 (3)0.7017 (3)0.04017 (7)0.0416 (4)
C2−0.0763 (2)0.5512 (3)0.06831 (7)0.0379 (4)
C3−0.1165 (2)0.3727 (2)0.09034 (7)0.0375 (4)
C40.1777 (2)0.1351 (2)0.19481 (7)0.0387 (4)
C50.3163 (3)0.0044 (3)0.21538 (9)0.0536 (5)
C60.3937 (3)0.0088 (3)0.27196 (9)0.0608 (6)
C70.3320 (3)0.1427 (3)0.30781 (9)0.0552 (6)
C80.1928 (3)0.2721 (3)0.28731 (9)0.0575 (5)
C90.1139 (3)0.2681 (3)0.23076 (8)0.0502 (5)
C10−0.2922 (3)0.2638 (3)0.09330 (8)0.0507 (5)
H10A−0.3971460.3412380.0766480.076*0.5
H10B−0.2907880.1425840.0730460.076*0.5
H10C−0.3025750.2372470.1321100.076*0.5
H10D−0.2631930.1394740.1112210.076*0.5
H10E−0.3695520.3381290.1148230.076*0.5
H10F−0.3577640.2434660.0557600.076*0.5
O1W0.3100 (2)0.9111 (2)0.05054 (6)0.0509 (4)
H1−0.199 (3)0.926 (4)−0.0049 (10)0.081 (7)*
H90.022 (3)0.353 (3)0.2172 (8)0.058 (6)*
H50.359 (3)−0.091 (3)0.1907 (9)0.067 (6)*
H60.495 (3)−0.078 (3)0.2851 (9)0.076 (7)*
H70.388 (3)0.149 (3)0.3456 (10)0.067 (6)*
H80.139 (3)0.367 (4)0.3125 (10)0.083 (7)*
H40.170 (3)0.056 (3)0.1157 (9)0.063 (6)*
H1WA0.415 (4)0.876 (4)0.0455 (10)0.074 (8)*
H1WB0.241 (4)0.800 (4)0.0552 (10)0.089 (8)*
U11U22U33U12U13U23
N10.0395 (9)0.0483 (9)0.0530 (9)0.0066 (7)0.0060 (7)0.0148 (8)
N20.0410 (9)0.0486 (9)0.0570 (10)0.0059 (8)0.0067 (7)0.0150 (8)
N30.0423 (9)0.0390 (8)0.0404 (8)0.0054 (7)0.0043 (6)0.0064 (7)
N40.0573 (10)0.0355 (9)0.0431 (9)0.0114 (7)0.0046 (7)0.0046 (7)
O10.0467 (8)0.0527 (8)0.0641 (9)0.0101 (7)0.0057 (7)0.0233 (7)
O20.0394 (8)0.0704 (10)0.0785 (10)0.0141 (7)0.0102 (7)0.0187 (8)
C10.0426 (11)0.0450 (11)0.0374 (9)0.0082 (9)0.0068 (8)0.0011 (8)
C20.0361 (10)0.0419 (10)0.0355 (9)0.0054 (8)0.0051 (7)0.0020 (8)
C30.0407 (10)0.0403 (10)0.0313 (9)0.0053 (8)0.0053 (7)−0.0019 (8)
C40.0390 (10)0.0348 (9)0.0428 (10)0.0029 (8)0.0080 (8)0.0070 (8)
C50.0580 (13)0.0519 (12)0.0522 (12)0.0201 (10)0.0129 (10)0.0078 (10)
C60.0533 (13)0.0678 (15)0.0594 (14)0.0172 (11)0.0027 (10)0.0192 (12)
C70.0569 (13)0.0638 (14)0.0433 (11)−0.0076 (11)0.0022 (10)0.0109 (11)
C80.0658 (14)0.0566 (13)0.0506 (12)0.0041 (11)0.0107 (10)−0.0039 (11)
C90.0498 (12)0.0487 (12)0.0512 (12)0.0146 (10)0.0045 (9)0.0020 (10)
C100.0478 (11)0.0478 (11)0.0557 (12)−0.0048 (9)0.0053 (9)−0.0045 (9)
O1W0.0430 (9)0.0445 (8)0.0649 (9)0.0073 (7)0.0074 (7)0.0108 (7)
N1—N21.307 (2)C5—H50.96 (2)
N1—C21.367 (2)C6—C71.373 (3)
N2—N31.356 (2)C6—H60.96 (2)
N3—C31.352 (2)C7—C81.372 (3)
N3—N41.394 (2)C7—H70.93 (2)
N4—C41.429 (2)C8—C91.387 (3)
N4—H40.91 (2)C8—H81.00 (2)
O1—C11.314 (2)C9—H90.90 (2)
O1—H10.94 (2)C10—H10A0.9600
O2—C11.210 (2)C10—H10B0.9600
C1—C21.470 (2)C10—H10C0.9600
C2—C31.376 (2)C10—H10D0.9600
C3—C101.482 (2)C10—H10E0.9600
C4—C51.376 (3)C10—H10F0.9600
C4—C91.377 (3)O1W—H1WA0.82 (3)
C5—C61.385 (3)O1W—H1WB0.92 (3)
N2—N1—C2109.36 (14)C6—C7—H7120.2 (13)
N1—N2—N3105.80 (14)C7—C8—C9120.5 (2)
C3—N3—N2112.91 (14)C7—C8—H8122.1 (13)
C3—N3—N4126.55 (15)C9—C8—H8117.3 (14)
N2—N3—N4120.53 (14)C4—C9—C8119.66 (19)
N3—N4—C4114.07 (14)C4—C9—H9119.7 (13)
N3—N4—H4106.5 (13)C8—C9—H9120.6 (13)
C4—N4—H4112.3 (14)C3—C10—H10A109.5
C1—O1—H1111.4 (14)C3—C10—H10B109.5
O2—C1—O1124.32 (17)H10A—C10—H10B109.5
O2—C1—C2122.91 (17)C3—C10—H10C109.5
O1—C1—C2112.77 (15)H10A—C10—H10C109.5
N1—C2—C3109.33 (15)H10B—C10—H10C109.5
N1—C2—C1120.80 (15)C3—C10—H10D109.5
C3—C2—C1129.87 (16)H10A—C10—H10D141.1
N3—C3—C2102.58 (14)H10B—C10—H10D56.3
N3—C3—C10123.43 (16)H10C—C10—H10D56.3
C2—C3—C10133.97 (16)C3—C10—H10E109.5
C5—C4—C9119.92 (18)H10A—C10—H10E56.3
C5—C4—N4118.51 (16)H10B—C10—H10E141.1
C9—C4—N4121.46 (16)H10C—C10—H10E56.3
C4—C5—C6120.0 (2)H10D—C10—H10E109.5
C4—C5—H5120.3 (13)C3—C10—H10F109.5
C6—C5—H5119.7 (13)H10A—C10—H10F56.3
C7—C6—C5120.3 (2)H10B—C10—H10F56.3
C7—C6—H6120.8 (13)H10C—C10—H10F141.1
C5—C6—H6118.8 (13)H10D—C10—H10F109.5
C8—C7—C6119.7 (2)H10E—C10—H10F109.5
C8—C7—H7120.1 (13)H1WA—O1W—H1WB108 (2)
C2—N1—N2—N30.73 (19)N1—C2—C3—N30.32 (18)
N1—N2—N3—C3−0.55 (19)C1—C2—C3—N3−179.89 (16)
N1—N2—N3—N4178.75 (14)N1—C2—C3—C10−178.06 (18)
C3—N3—N4—C4−114.38 (18)C1—C2—C3—C101.7 (3)
N2—N3—N4—C466.4 (2)N3—N4—C4—C5−141.88 (17)
N2—N1—C2—C3−0.69 (19)N3—N4—C4—C941.9 (2)
N2—N1—C2—C1179.51 (15)C9—C4—C5—C6−1.1 (3)
O2—C1—C2—N1−168.96 (17)N4—C4—C5—C6−177.43 (18)
O1—C1—C2—N110.7 (2)C4—C5—C6—C70.3 (3)
O2—C1—C2—C311.3 (3)C5—C6—C7—C80.1 (3)
O1—C1—C2—C3−169.10 (17)C6—C7—C8—C90.2 (3)
N2—N3—C3—C20.13 (18)C5—C4—C9—C81.4 (3)
N4—N3—C3—C2−179.11 (15)N4—C4—C9—C8177.62 (18)
N2—N3—C3—C10178.74 (15)C7—C8—C9—C4−1.0 (3)
N4—N3—C3—C10−0.5 (3)
D—H···AD—HH···AD···AD—H···A
O1—H1···O1Wi0.94 (2)1.68 (3)2.6030 (19)167 (2)
N4—H4···O1Wii0.91 (2)2.22 (2)3.111 (2)169.2 (19)
O1W—H1WA···O2iii0.82 (3)1.99 (3)2.773 (2)159 (2)
O1W—H1WB···N10.92 (3)1.88 (3)2.800 (2)172 (2)
  6 in total

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Review 2.  Triazole antifungals: a review.

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6.  The Cambridge Structural Database.

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