| Literature DB >> 31391955 |
Ayat Yaseen1, Muhammad Murtaza Hassan1, Edward Lee-Ruff1, Gerald F Audette1.
Abstract
The crystal structures of an inter-mediate, C10H9ClN4O, 3-[(6-chloro-7H-purin-7-yl)meth-yl]cyclo-butan-1-one (I), and two N-7 and N-9 regioisomeric oxetanocin nucleoside analogs, C10H13ClN4O, 3-[(6-chloro-8,9-di-hydro-7H-purin-7-yl)meth-yl]cyclo-butan-1-ol (II) and C10H11ClN4O, 3-[(6-chloro-9H-purin-9-yl)meth-yl]cyclo-butan-1-ol (IV), are reported. The crystal structures of the nucleoside analogs confirmed the reduction of the N-7- and N-9-substituted cyclo-butano-nes with LiAl(OtBu)3 to occur with facial selectivity, yielding cis-nucleosides analogs similar to those found in nature. Reduction of the purine ring of the N-7 cyclo-butanone to a di-hydro-purine was observed for compound (II) but not for the purine ring of the N-9 cyclo-butanone on formation of compound (IV). In the crystal of (I), mol-ecules are linked by a weak Cl⋯O inter-action, forming a 21 helix along [010]. The helices are linked by offset π-π inter-actions [inter-centroid distance = 3.498 (1) Å], forming layers parallel to (101). In the crystal of (II), mol-ecules are linked by pairs of O-H⋯N hydrogen bonds, forming inversion dimers with an R 2 2(8) ring motif. The dimers are linked by O-H⋯N hydrogen bonds, forming chains along [001], which in turn are linked by C-H⋯π and offset π-π inter-actions [inter-centroid distance = 3.509 (1) Å], forming slabs parallel to the ac plane. In the crystal of (IV), mol-ecules are linked by O-H⋯N hydrogen bonds, forming chains along [101]. The chains are linked by C-H⋯N and C-H⋯O hydrogen bonds and C-H⋯π and offset π-π inter-actions [inter-centroid distance = 3.364 (1) Å], forming a supra-molecular framework.Entities:
Keywords: HIV; crystal structure; cyclobutanol; cyclobutanone; hydrogen bonding; offset π–π interactions; oxetonacin; supramolecular framework
Year: 2019 PMID: 31391955 PMCID: PMC6658957 DOI: 10.1107/S2056989019004432
Source DB: PubMed Journal: Acta Crystallogr E Crystallogr Commun
Figure 1The molecular structure of compound (I), with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level. The intramolecular C—H⋯Cl interaction (Table 1 ▸) is shown as a thin dashed line.
Figure 2The molecular structure of compound (II), with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level. The intramolecular C—H⋯Cl interaction (Table 2 ▸) is shown as a thin dashed line. The minor fraction of the disordered atoms C4′ and C6′, i.e. C4′B and 6′B, are shown with dashed bonds.
Figure 3The molecular structure of compound (IV), with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.
Hydrogen-bond geometry (Å, °) for (I)
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C6′—H6′ | 0.99 | 2.66 | 3.407 (2) | 132 |
Hydrogen-bond geometry (Å, °) for (II)
Cg1 is the centroid of the N1/C2/N3/C4/C5/C6 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| C6′—H6′2⋯Cl1 | 0.99 | 2.64 | 3.390 (3) | 132 |
| N9—H9⋯N3i | 0.83 (2) | 2.14 (2) | 2.952 (2) | 166 (2) |
| O1′—H1′⋯N1ii | 0.84 (3) | 2.09 (3) | 2.909 (2) | 164 (3) |
| C4′—H4′⋯ | 0.99 | 2.87 | 3.857 (3) | 170 |
Symmetry codes: (i) ; (ii) ; (iii) .
Hydrogen-bond geometry (Å, °) for (IV)
Cg1 is the centroid of the N1/C2/N3/C4/C5/C6 ring.
|
|
| H⋯ |
|
|
|---|---|---|---|---|
| O1′—H1′⋯N7i | 0.84 | 2.03 | 2.853 (3) | 168 |
| C8—H8⋯O1′ii | 0.95 | 2.27 | 3.148 (2) | 153 |
| C2—H2⋯N3iii | 0.95 | 2.48 | 3.311 (3) | 146 |
| C2′—H2′⋯ | 0.99 | 2.84 | 3.628 (2) | 136 |
Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .
Figure 4Crystal packing of compound (I), viewed normal to (101). The weak intermolecular Cl⋯O interactions are shown as dashed lines. For clarity, the C-bound H atoms have been omitted.
Figure 5Crystal packing of compound (II), viewed along the b axis. The N—H⋯N and O—H⋯N hydrogen bonds (Table 2 ▸) are shown as dashed lines. For clarity, the C-bound H atoms have been omitted. The minor components of the disordered atoms C4′ and C6′ (i.e. C4′B and 6′B) have been omitted.
Geometric parameters (Å, °) about atom C8 for compounds (I), (II) and (IV)
| Bond/angle | (I) | (II) | (IV) |
|---|---|---|---|
| C8—N7 | 1.381 (2) | 1.471 (3) | 1.362 (3) |
| C8—N9 | 1.301 (2) | 1.455 (3) | 1.321 (3) |
| N7—C8—N9 | 114.95 (15) | 103.41 (15) | 114.28 (18) |
Figure 6Crystal packing of compound (IV), viewed along the b axis. The various hydrogen bonds (Table 3 ▸) are shown as dashed lines. For clarity, only the H atoms involved in these interactions have been included.
Experimental details
| (I) | (II) | (IV) | |
|---|---|---|---|
| Crystal data | |||
| Chemical formula | C10H9ClN4O | C10H13ClN4O | C10H11ClN4O |
|
| 236.66 | 240.69 | 238.68 |
| Crystal system, space group | Monoclinic, | Triclinic, | Monoclinic, |
| Temperature (K) | 110 | 110 | 110 |
|
| 11.9736 (5), 6.8854 (4), 12.2746 (5) | 6.1101 (4), 8.6075 (5), 11.0083 (7) | 12.7276 (8), 5.9725 (4), 14.819 (1) |
| α, β, γ (°) | 90, 92.938 (4), 90 | 68.957 (6), 83.799 (5), 87.189 (5) | 90, 108.250 (3), 90 |
|
| 1010.63 (8) | 537.15 (6) | 1069.81 (12) |
|
| 4 | 2 | 4 |
| Radiation type | Mo | Cu | Cu |
| μ (mm−1) | 0.36 | 3.03 | 3.04 |
| Crystal size (mm) | 0.43 × 0.21 × 0.04 | 0.44 × 0.30 × 0.12 | 0.50 × 0.21 × 0.07 |
| Data collection | |||
| Diffractometer | Bruker APEXII CCD | Bruker–Nonius Kappa CCD | Bruker APEXII CCD |
| Absorption correction | Multi-scan ( | Multi-scan ( | Numerical ( |
|
| 0.661, 1.000 | 0.771, 1.000 | 0.043, 0.741 |
| No. of measured, independent and observed [ | 35539, 2508, 2217 | 9261, 1793, 1681 | 7078, 1732, 1569 |
|
| 0.046 | 0.028 | 0.045 |
| (sin θ/λ)max (Å−1) | 0.667 | 0.592 | 0.587 |
| Refinement | |||
|
| 0.043, 0.111, 1.07 | 0.037, 0.098, 1.07 | 0.038, 0.103, 0.94 |
| No. of reflections | 2508 | 1793 | 1732 |
| No. of parameters | 145 | 160 | 146 |
| No. of restraints | 0 | 1 | 0 |
| H-atom treatment | H-atom parameters constrained | H atoms treated by a mixture of independent and constrained refinement | H-atom parameters constrained |
| Δρmax, Δρmin (e Å−3) | 0.60, −0.28 | 0.71, −0.27 | 0.35, −0.31 |
Computer programs: CrysAlis PRO (Rigaku OD, 2018 ▸), SHELXS (Sheldrick, 2008 ▸), SHELXL (Sheldrick, 2015 ▸), PLATON (Spek, 2009 ▸) and Mercury (Macrae et al., 2008 ▸), OLEX2 (Dolomanov et al., 2009 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).
| C10H9ClN4O | |
| Monoclinic, | Mo |
| Cell parameters from 9903 reflections | |
| θ = 3.3–32.6° | |
| µ = 0.36 mm−1 | |
| β = 92.938 (4)° | |
| Plate, pale_yellow | |
| 0.43 × 0.21 × 0.04 mm |
| Bruker APEXII CCD diffractometer | 2508 independent reflections |
| Radiation source: sealed X-ray tube | 2217 reflections with |
| Graphite monochromator | |
| ω scans | θmax = 28.3°, θmin = 3.3° |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2018) | |
| 35539 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 2508 reflections | (Δ/σ)max < 0.001 |
| 145 parameters | Δρmax = 0.60 e Å−3 |
| 0 restraints | Δρmin = −0.28 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Cl1 | 0.70136 (4) | 0.21385 (7) | 0.52904 (4) | 0.02685 (14) | |
| N1 | 0.81306 (13) | 0.2530 (2) | 0.35301 (12) | 0.0230 (3) | |
| N3 | 0.93051 (12) | 0.5196 (2) | 0.30500 (11) | 0.0219 (3) | |
| N7 | 0.84068 (11) | 0.6388 (2) | 0.56456 (11) | 0.0183 (3) | |
| N9 | 0.95030 (12) | 0.7744 (2) | 0.44062 (12) | 0.0216 (3) | |
| O1' | 0.43878 (13) | 0.6449 (3) | 0.76126 (16) | 0.0503 (5) | |
| C2' | 0.53242 (16) | 0.6753 (3) | 0.73657 (17) | 0.0303 (4) | |
| C3' | 0.64220 (16) | 0.7042 (3) | 0.80129 (15) | 0.0297 (4) | |
| H3'A | 0.670598 | 0.585740 | 0.839075 | 0.036* | |
| H3'B | 0.642461 | 0.816481 | 0.851695 | 0.036* | |
| C4' | 0.69801 (14) | 0.7464 (3) | 0.69174 (14) | 0.0215 (4) | |
| H4' | 0.720328 | 0.885805 | 0.685533 | 0.026* | |
| C5' | 0.58520 (15) | 0.7032 (3) | 0.62724 (16) | 0.0297 (4) | |
| H5'A | 0.554763 | 0.814870 | 0.584483 | 0.036* | |
| H5'B | 0.586295 | 0.584132 | 0.582080 | 0.036* | |
| C6' | 0.79428 (14) | 0.6106 (3) | 0.67259 (12) | 0.0198 (3) | |
| H6'A | 0.854160 | 0.632156 | 0.729957 | 0.024* | |
| H6'B | 0.768262 | 0.474799 | 0.678746 | 0.024* | |
| C2 | 0.88240 (14) | 0.3491 (3) | 0.28787 (13) | 0.0230 (4) | |
| H2 | 0.898377 | 0.285913 | 0.221649 | 0.028* | |
| C4 | 0.90857 (13) | 0.6006 (3) | 0.40103 (13) | 0.0183 (3) | |
| C5 | 0.83895 (13) | 0.5123 (2) | 0.47653 (12) | 0.0176 (3) | |
| C6 | 0.79181 (14) | 0.3358 (3) | 0.44645 (13) | 0.0198 (3) | |
| C8 | 0.90917 (14) | 0.7900 (3) | 0.53629 (14) | 0.0205 (3) | |
| H8 | 0.925073 | 0.897356 | 0.583167 | 0.025* |
| Cl1 | 0.0305 (2) | 0.0264 (2) | 0.0241 (2) | −0.00833 (17) | 0.00535 (16) | 0.00170 (17) |
| N1 | 0.0231 (7) | 0.0246 (8) | 0.0213 (7) | 0.0002 (6) | 0.0002 (6) | −0.0029 (6) |
| N3 | 0.0215 (7) | 0.0272 (8) | 0.0173 (7) | 0.0026 (6) | 0.0046 (5) | 0.0014 (6) |
| N7 | 0.0202 (7) | 0.0202 (7) | 0.0146 (6) | 0.0007 (5) | 0.0030 (5) | 0.0009 (5) |
| N9 | 0.0213 (7) | 0.0210 (7) | 0.0229 (7) | −0.0006 (6) | 0.0036 (5) | 0.0027 (6) |
| O1' | 0.0302 (8) | 0.0585 (12) | 0.0639 (11) | −0.0075 (8) | 0.0186 (8) | 0.0010 (9) |
| C2' | 0.0257 (9) | 0.0282 (10) | 0.0377 (10) | 0.0011 (7) | 0.0102 (8) | −0.0006 (8) |
| C3' | 0.0284 (9) | 0.0409 (12) | 0.0207 (8) | 0.0025 (8) | 0.0091 (7) | 0.0002 (8) |
| C4' | 0.0198 (8) | 0.0263 (9) | 0.0187 (8) | 0.0019 (6) | 0.0046 (6) | 0.0022 (6) |
| C5' | 0.0215 (8) | 0.0425 (12) | 0.0251 (9) | 0.0037 (8) | 0.0000 (7) | −0.0010 (8) |
| C6' | 0.0228 (8) | 0.0253 (9) | 0.0116 (7) | 0.0016 (7) | 0.0033 (6) | 0.0011 (6) |
| C2 | 0.0229 (8) | 0.0301 (9) | 0.0162 (7) | 0.0041 (7) | 0.0021 (6) | −0.0038 (7) |
| C4 | 0.0177 (7) | 0.0204 (8) | 0.0168 (7) | 0.0022 (6) | 0.0003 (6) | 0.0037 (6) |
| C5 | 0.0179 (7) | 0.0213 (8) | 0.0135 (7) | 0.0035 (6) | 0.0004 (6) | 0.0011 (6) |
| C6 | 0.0195 (7) | 0.0223 (8) | 0.0175 (7) | 0.0007 (6) | 0.0015 (6) | 0.0039 (6) |
| C8 | 0.0205 (7) | 0.0176 (8) | 0.0232 (8) | 0.0009 (6) | −0.0014 (6) | −0.0022 (6) |
| Cl1—C6 | 1.7372 (17) | C3'—H3'A | 0.9900 |
| N1—C6 | 1.317 (2) | C3'—H3'B | 0.9900 |
| N1—C2 | 1.354 (2) | C4'—C6' | 1.512 (2) |
| N3—C2 | 1.320 (2) | C4'—C5' | 1.559 (2) |
| N3—C4 | 1.342 (2) | C4'—H4' | 1.0000 |
| N7—C8 | 1.381 (2) | C5'—H5'A | 0.9900 |
| N7—C5 | 1.387 (2) | C5'—H5'B | 0.9900 |
| N7—C6' | 1.4765 (19) | C6'—H6'A | 0.9900 |
| N9—C8 | 1.301 (2) | C6'—H6'B | 0.9900 |
| N9—C4 | 1.376 (2) | C2—H2 | 0.9500 |
| O1'—C2' | 1.195 (2) | C4—C5 | 1.415 (2) |
| C2'—C3' | 1.514 (3) | C5—C6 | 1.382 (2) |
| C2'—C5' | 1.524 (3) | C8—H8 | 0.9500 |
| C3'—C4' | 1.559 (2) | ||
| C6—N1—C2 | 117.04 (16) | C2'—C5'—H5'B | 114.0 |
| C2—N3—C4 | 113.96 (15) | C4'—C5'—H5'B | 114.0 |
| C8—N7—C5 | 105.24 (13) | H5'A—C5'—H5'B | 111.2 |
| C8—N7—C6' | 125.49 (14) | N7—C6'—C4' | 112.54 (14) |
| C5—N7—C6' | 128.74 (15) | N7—C6'—H6'A | 109.1 |
| C8—N9—C4 | 104.09 (14) | C4'—C6'—H6'A | 109.1 |
| O1'—C2'—C3' | 133.7 (2) | N7—C6'—H6'B | 109.1 |
| O1'—C2'—C5' | 133.0 (2) | C4'—C6'—H6'B | 109.1 |
| C3'—C2'—C5' | 93.29 (14) | H6'A—C6'—H6'B | 107.8 |
| C2'—C3'—C4' | 88.33 (14) | N3—C2—N1 | 128.03 (16) |
| C2'—C3'—H3'A | 113.9 | N3—C2—H2 | 116.0 |
| C4'—C3'—H3'A | 113.9 | N1—C2—H2 | 116.0 |
| C2'—C3'—H3'B | 113.9 | N3—C4—N9 | 126.01 (15) |
| C4'—C3'—H3'B | 113.9 | N3—C4—C5 | 123.02 (16) |
| H3'A—C3'—H3'B | 111.1 | N9—C4—C5 | 110.96 (14) |
| C6'—C4'—C5' | 116.77 (16) | C6—C5—N7 | 138.56 (15) |
| C6'—C4'—C3' | 112.49 (15) | C6—C5—C4 | 116.68 (15) |
| C5'—C4'—C3' | 90.22 (14) | N7—C5—C4 | 104.75 (14) |
| C6'—C4'—H4' | 111.9 | N1—C6—C5 | 121.22 (16) |
| C5'—C4'—H4' | 111.9 | N1—C6—Cl1 | 116.95 (14) |
| C3'—C4'—H4' | 111.9 | C5—C6—Cl1 | 121.83 (13) |
| C2'—C5'—C4' | 87.96 (14) | N9—C8—N7 | 114.95 (15) |
| C2'—C5'—H5'A | 114.0 | N9—C8—H8 | 122.5 |
| C4'—C5'—H5'A | 114.0 | N7—C8—H8 | 122.5 |
| O1'—C2'—C3'—C4' | −175.7 (3) | C8—N7—C5—C6 | 179.2 (2) |
| C5'—C2'—C3'—C4' | 3.32 (16) | C6'—N7—C5—C6 | 7.2 (3) |
| C2'—C3'—C4'—C6' | −122.53 (16) | C8—N7—C5—C4 | 0.10 (17) |
| C2'—C3'—C4'—C5' | −3.24 (16) | C6'—N7—C5—C4 | −171.83 (15) |
| O1'—C2'—C5'—C4' | 175.7 (3) | N3—C4—C5—C6 | −0.8 (2) |
| C3'—C2'—C5'—C4' | −3.32 (16) | N9—C4—C5—C6 | −179.83 (14) |
| C6'—C4'—C5'—C2' | 118.72 (16) | N3—C4—C5—N7 | 178.47 (15) |
| C3'—C4'—C5'—C2' | 3.22 (15) | N9—C4—C5—N7 | −0.52 (18) |
| C8—N7—C6'—C4' | 76.0 (2) | C2—N1—C6—C5 | −0.4 (2) |
| C5—N7—C6'—C4' | −113.61 (19) | C2—N1—C6—Cl1 | 179.16 (13) |
| C5'—C4'—C6'—N7 | 72.5 (2) | N7—C5—C6—N1 | −177.58 (18) |
| C3'—C4'—C6'—N7 | 174.86 (15) | C4—C5—C6—N1 | 1.4 (2) |
| C4—N3—C2—N1 | 2.1 (3) | N7—C5—C6—Cl1 | 2.9 (3) |
| C6—N1—C2—N3 | −1.5 (3) | C4—C5—C6—Cl1 | −178.08 (12) |
| C2—N3—C4—N9 | 178.09 (16) | C4—N9—C8—N7 | −0.70 (19) |
| C2—N3—C4—C5 | −0.8 (2) | C5—N7—C8—N9 | 0.4 (2) |
| C8—N9—C4—N3 | −178.22 (16) | C6'—N7—C8—N9 | 172.66 (15) |
| C8—N9—C4—C5 | 0.74 (18) |
| H··· | ||||
| C6′—H6′ | 0.99 | 2.66 | 3.407 (2) | 132 |
| C4′—H4′···Cl1i | 1.00 | 2.97 | 3.7889 (19) | 140 |
| C6′—H6′ | 0.99 | 2.68 | 3.343 (2) | 124 |
| C10H13ClN4O | |
| Triclinic, | |
| Cu | |
| Cell parameters from 8605 reflections | |
| θ = 4.3–65.4° | |
| α = 68.957 (6)° | µ = 3.03 mm−1 |
| β = 83.799 (5)° | |
| γ = 87.189 (5)° | Plate, colorless |
| 0.44 × 0.30 × 0.12 mm |
| Bruker–Nonius Kappa CCD diffractometer | 1793 independent reflections |
| Radiation source: sealed X-ray tube, Enhance (Cu) X-ray Source | 1681 reflections with |
| Detector resolution: 7.9 pixels mm-1 | |
| ω scans | θmax = 66.0°, θmin = 4.3° |
| Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2018) | |
| 9261 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: mixed | |
| H atoms treated by a mixture of independent and constrained refinement | |
| 1793 reflections | (Δ/σ)max < 0.001 |
| 160 parameters | Δρmax = 0.71 e Å−3 |
| 1 restraint | Δρmin = −0.27 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Occ. (<1) | |||||
| Cl1 | 0.16834 (8) | 0.41808 (6) | 0.40624 (5) | 0.02598 (19) | |
| N1 | 0.4817 (3) | 0.2850 (2) | 0.28999 (16) | 0.0208 (4) | |
| C2 | 0.6669 (3) | 0.2012 (3) | 0.28642 (19) | 0.0208 (4) | |
| H2 | 0.719070 | 0.193795 | 0.204161 | 0.025* | |
| N3 | 0.7920 (3) | 0.1241 (2) | 0.38609 (16) | 0.0201 (4) | |
| C4 | 0.7122 (3) | 0.1387 (2) | 0.49898 (19) | 0.0181 (4) | |
| C5 | 0.5139 (3) | 0.2254 (2) | 0.51675 (19) | 0.0175 (4) | |
| C6 | 0.4064 (3) | 0.2984 (2) | 0.40720 (19) | 0.0185 (4) | |
| N7 | 0.4843 (3) | 0.2163 (2) | 0.64573 (16) | 0.0195 (4) | |
| C8 | 0.6671 (3) | 0.1184 (3) | 0.71453 (19) | 0.0217 (4) | |
| H8A | 0.750275 | 0.184768 | 0.750830 | 0.026* | |
| H8B | 0.612778 | 0.016417 | 0.786389 | 0.026* | |
| N9 | 0.8027 (3) | 0.0776 (2) | 0.61286 (16) | 0.0212 (4) | |
| H9 | 0.916 (3) | 0.018 (3) | 0.627 (2) | 0.021 (6)* | |
| O1' | 0.1576 (3) | 0.2578 (2) | 1.12373 (14) | 0.0278 (4) | |
| H1' | 0.256 (5) | 0.284 (4) | 1.161 (3) | 0.045 (8)* | |
| C2' | 0.2169 (4) | 0.3455 (3) | 0.9900 (2) | 0.0273 (5) | |
| H2' | 0.230429 | 0.466833 | 0.973632 | 0.033* | |
| C3' | 0.4091 (4) | 0.2873 (3) | 0.9160 (2) | 0.0346 (6) | |
| H3'1 | 0.446403 | 0.167641 | 0.956402 | 0.041* | |
| H3'2 | 0.541933 | 0.356932 | 0.895749 | 0.041* | |
| C5' | 0.0629 (4) | 0.3203 (3) | 0.8985 (2) | 0.0277 (5) | |
| H5'1 | −0.044286 | 0.412524 | 0.866879 | 0.033* | |
| H5'2 | −0.011259 | 0.211215 | 0.933326 | 0.033* | |
| C4' | 0.2642 (4) | 0.3281 (3) | 0.7998 (2) | 0.0240 (6) | 0.858 (4) |
| H4' | 0.288618 | 0.445876 | 0.739504 | 0.029* | 0.858 (4) |
| C6' | 0.2716 (4) | 0.2157 (3) | 0.7213 (2) | 0.0229 (6) | 0.858 (4) |
| H6'1 | 0.239112 | 0.100518 | 0.781565 | 0.027* | 0.858 (4) |
| H6'2 | 0.155181 | 0.251106 | 0.660680 | 0.027* | 0.858 (4) |
| C4'B | 0.246 (3) | 0.216 (2) | 0.8417 (15) | 0.0240 (6) | 0.142 (4) |
| H4'B | 0.228733 | 0.092243 | 0.870206 | 0.029* | 0.142 (4) |
| C6'B | 0.332 (3) | 0.308 (2) | 0.7043 (15) | 0.0229 (6) | 0.142 (4) |
| H6'3 | 0.206224 | 0.345077 | 0.650824 | 0.027* | 0.142 (4) |
| H6'4 | 0.406521 | 0.409522 | 0.701360 | 0.027* | 0.142 (4) |
| Cl1 | 0.0222 (3) | 0.0321 (3) | 0.0240 (3) | 0.0101 (2) | −0.0049 (2) | −0.0110 (2) |
| N1 | 0.0227 (9) | 0.0239 (9) | 0.0162 (8) | 0.0000 (7) | −0.0018 (7) | −0.0078 (7) |
| C2 | 0.0227 (11) | 0.0255 (10) | 0.0158 (10) | −0.0004 (8) | 0.0012 (8) | −0.0104 (8) |
| N3 | 0.0198 (9) | 0.0244 (9) | 0.0173 (8) | 0.0013 (7) | 0.0010 (7) | −0.0100 (7) |
| C4 | 0.0171 (10) | 0.0192 (10) | 0.0186 (10) | −0.0008 (8) | −0.0003 (8) | −0.0080 (8) |
| C5 | 0.0181 (10) | 0.0193 (9) | 0.0166 (10) | −0.0025 (8) | 0.0006 (8) | −0.0087 (8) |
| C6 | 0.0168 (10) | 0.0204 (10) | 0.0192 (10) | 0.0014 (8) | −0.0004 (8) | −0.0087 (8) |
| N7 | 0.0173 (9) | 0.0277 (9) | 0.0155 (8) | 0.0057 (7) | −0.0014 (7) | −0.0109 (7) |
| C8 | 0.0212 (11) | 0.0293 (11) | 0.0176 (10) | 0.0059 (8) | −0.0036 (8) | −0.0121 (8) |
| N9 | 0.0181 (9) | 0.0294 (10) | 0.0181 (9) | 0.0094 (7) | −0.0038 (7) | −0.0114 (7) |
| O1' | 0.0275 (9) | 0.0394 (9) | 0.0177 (7) | 0.0028 (7) | −0.0043 (6) | −0.0115 (7) |
| C2' | 0.0286 (12) | 0.0371 (12) | 0.0179 (10) | −0.0017 (9) | −0.0008 (9) | −0.0119 (9) |
| C3' | 0.0257 (12) | 0.0522 (15) | 0.0340 (13) | 0.0000 (11) | −0.0030 (10) | −0.0253 (12) |
| C5' | 0.0250 (11) | 0.0400 (13) | 0.0215 (11) | 0.0119 (9) | −0.0052 (9) | −0.0157 (10) |
| C4' | 0.0258 (13) | 0.0263 (14) | 0.0205 (12) | 0.0035 (11) | 0.0002 (10) | −0.0104 (11) |
| C6' | 0.0164 (12) | 0.0341 (16) | 0.0216 (12) | 0.0011 (11) | 0.0000 (10) | −0.0147 (11) |
| C4'B | 0.0258 (13) | 0.0263 (14) | 0.0205 (12) | 0.0035 (11) | 0.0002 (10) | −0.0104 (11) |
| C6'B | 0.0164 (12) | 0.0341 (16) | 0.0216 (12) | 0.0011 (11) | 0.0000 (10) | −0.0147 (11) |
| Cl1—C6 | 1.739 (2) | C2'—C3' | 1.524 (3) |
| N1—C2 | 1.317 (3) | C2'—C5' | 1.527 (3) |
| N1—C6 | 1.365 (3) | C2'—H2' | 1.0000 |
| C2—N3 | 1.355 (3) | C3'—C4' | 1.561 (3) |
| C2—H2 | 0.9500 | C3'—C4'B | 1.626 (16) |
| N3—C4 | 1.332 (3) | C3'—H3'1 | 0.9900 |
| C4—N9 | 1.342 (3) | C3'—H3'2 | 0.9900 |
| C4—C5 | 1.424 (3) | C5'—C4' | 1.537 (3) |
| C5—C6 | 1.366 (3) | C5'—C4'B | 1.616 (15) |
| C5—N7 | 1.386 (2) | C5'—H5'1 | 0.9900 |
| N7—C6'B | 1.440 (15) | C5'—H5'2 | 0.9900 |
| N7—C6' | 1.465 (3) | C4'—C6' | 1.508 (3) |
| N7—C8 | 1.471 (3) | C4'—H4' | 1.0000 |
| C8—N9 | 1.455 (3) | C6'—H6'1 | 0.9900 |
| C8—H8A | 0.9900 | C6'—H6'2 | 0.9900 |
| C8—H8B | 0.9900 | C4'B—C6'B | 1.48 (2) |
| N9—H9 | 0.833 (17) | C4'B—H4'B | 1.0000 |
| O1'—C2' | 1.407 (3) | C6'B—H6'3 | 0.9900 |
| O1'—H1' | 0.84 (3) | C6'B—H6'4 | 0.9900 |
| C2—N1—C6 | 116.73 (17) | C2'—C3'—H3'1 | 114.0 |
| N1—C2—N3 | 127.76 (18) | C4'—C3'—H3'1 | 114.0 |
| N1—C2—H2 | 116.1 | C2'—C3'—H3'2 | 114.0 |
| N3—C2—H2 | 116.1 | C4'—C3'—H3'2 | 114.0 |
| C4—N3—C2 | 113.74 (17) | H3'1—C3'—H3'2 | 111.2 |
| N3—C4—N9 | 126.70 (19) | C2'—C5'—C4' | 88.64 (17) |
| N3—C4—C5 | 124.39 (18) | C2'—C5'—C4'B | 92.8 (6) |
| N9—C4—C5 | 108.91 (17) | C2'—C5'—H5'1 | 113.9 |
| C6—C5—N7 | 136.29 (19) | C4'—C5'—H5'1 | 113.9 |
| C6—C5—C4 | 115.33 (18) | C2'—C5'—H5'2 | 113.9 |
| N7—C5—C4 | 108.35 (17) | C4'—C5'—H5'2 | 113.9 |
| N1—C6—C5 | 122.04 (18) | H5'1—C5'—H5'2 | 111.1 |
| N1—C6—Cl1 | 115.38 (15) | C6'—C4'—C5' | 118.5 (2) |
| C5—C6—Cl1 | 122.56 (15) | C6'—C4'—C3' | 120.1 (2) |
| C5—N7—C6'B | 128.7 (6) | C5'—C4'—C3' | 87.40 (17) |
| C5—N7—C6' | 125.55 (17) | C6'—C4'—H4' | 109.7 |
| C5—N7—C8 | 108.55 (16) | C5'—C4'—H4' | 109.7 |
| C6'B—N7—C8 | 121.7 (6) | C3'—C4'—H4' | 109.7 |
| C6'—N7—C8 | 118.33 (17) | N7—C6'—C4' | 113.3 (2) |
| N9—C8—N7 | 103.41 (15) | N7—C6'—H6'1 | 108.9 |
| N9—C8—H8A | 111.1 | C4'—C6'—H6'1 | 108.9 |
| N7—C8—H8A | 111.1 | N7—C6'—H6'2 | 108.9 |
| N9—C8—H8B | 111.1 | C4'—C6'—H6'2 | 108.9 |
| N7—C8—H8B | 111.1 | H6'1—C6'—H6'2 | 107.7 |
| H8A—C8—H8B | 109.0 | C6'B—C4'B—C5' | 112.7 (13) |
| C4—N9—C8 | 110.76 (17) | C6'B—C4'B—C3' | 99.0 (12) |
| C4—N9—H9 | 125.9 (17) | C5'—C4'B—C3' | 82.6 (7) |
| C8—N9—H9 | 123.2 (17) | C6'B—C4'B—H4'B | 118.5 |
| C2'—O1'—H1' | 103 (2) | C5'—C4'B—H4'B | 118.5 |
| O1'—C2'—C3' | 121.1 (2) | C3'—C4'B—H4'B | 118.5 |
| O1'—C2'—C5' | 114.52 (18) | N7—C6'B—C4'B | 115.0 (14) |
| C3'—C2'—C5' | 89.12 (16) | N7—C6'B—H6'3 | 108.5 |
| O1'—C2'—H2' | 110.1 | C4'B—C6'B—H6'3 | 108.5 |
| C3'—C2'—H2' | 110.1 | N7—C6'B—H6'4 | 108.5 |
| C5'—C2'—H2' | 110.1 | C4'B—C6'B—H6'4 | 108.5 |
| C2'—C3'—C4' | 87.87 (18) | H6'3—C6'B—H6'4 | 107.5 |
| C2'—C3'—C4'B | 92.5 (5) | ||
| C6—N1—C2—N3 | 0.8 (3) | N7—C8—N9—C4 | −1.3 (2) |
| N1—C2—N3—C4 | −0.3 (3) | O1'—C2'—C3'—C4' | 138.2 (2) |
| C2—N3—C4—N9 | −178.94 (19) | C5'—C2'—C3'—C4' | 19.78 (18) |
| C2—N3—C4—C5 | 0.4 (3) | O1'—C2'—C3'—C4'B | 105.1 (6) |
| N3—C4—C5—C6 | −1.1 (3) | C5'—C2'—C3'—C4'B | −13.3 (6) |
| N9—C4—C5—C6 | 178.36 (17) | O1'—C2'—C5'—C4' | −144.2 (2) |
| N3—C4—C5—N7 | −179.35 (17) | C3'—C2'—C5'—C4' | −20.09 (19) |
| N9—C4—C5—N7 | 0.1 (2) | O1'—C2'—C5'—C4'B | −110.7 (6) |
| C2—N1—C6—C5 | −1.6 (3) | C3'—C2'—C5'—C4'B | 13.4 (6) |
| C2—N1—C6—Cl1 | 177.14 (14) | C2'—C5'—C4'—C6' | 142.7 (2) |
| N7—C5—C6—N1 | 179.3 (2) | C2'—C5'—C4'—C3' | 19.62 (18) |
| C4—C5—C6—N1 | 1.6 (3) | C2'—C3'—C4'—C6' | −141.4 (2) |
| N7—C5—C6—Cl1 | 0.7 (3) | C2'—C3'—C4'—C5' | −19.66 (18) |
| C4—C5—C6—Cl1 | −176.96 (14) | C5—N7—C6'—C4' | −135.6 (2) |
| C6—C5—N7—C6'B | −10.1 (10) | C8—N7—C6'—C4' | 78.4 (3) |
| C4—C5—N7—C6'B | 167.6 (10) | C5'—C4'—C6'—N7 | −171.4 (2) |
| C6—C5—N7—C6' | 32.6 (4) | C3'—C4'—C6'—N7 | −66.6 (3) |
| C4—C5—N7—C6' | −149.7 (2) | C2'—C5'—C4'B—C6'B | −109.4 (12) |
| C6—C5—N7—C8 | −178.7 (2) | C2'—C5'—C4'B—C3' | −12.7 (6) |
| C4—C5—N7—C8 | −0.9 (2) | C2'—C3'—C4'B—C6'B | 124.6 (10) |
| C5—N7—C8—N9 | 1.3 (2) | C2'—C3'—C4'B—C5' | 12.7 (6) |
| C6'B—N7—C8—N9 | −168.2 (9) | C5—N7—C6'B—C4'B | 146.2 (9) |
| C6'—N7—C8—N9 | 152.69 (18) | C8—N7—C6'B—C4'B | −46.6 (16) |
| N3—C4—N9—C8 | −179.79 (18) | C5'—C4'B—C6'B—N7 | −175.7 (10) |
| C5—C4—N9—C8 | 0.8 (2) | C3'—C4'B—C6'B—N7 | 98.5 (13) |
| H··· | ||||
| C6′—H6′2···Cl1 | 0.99 | 2.64 | 3.390 (3) | 132 |
| N9—H9···N3i | 0.83 (2) | 2.14 (2) | 2.952 (2) | 166 (2) |
| O1′—H1′···N1ii | 0.84 (3) | 2.09 (3) | 2.909 (2) | 164 (3) |
| C4′—H4′··· | 0.99 | 2.87 | 3.857 (3) | 170 |
| C10H11ClN4O | |
| Monoclinic, | Cu |
| Cell parameters from 4964 reflections | |
| θ = 4.0–64.9° | |
| µ = 3.04 mm−1 | |
| β = 108.250 (3)° | |
| Plate, colourless | |
| 0.50 × 0.21 × 0.07 mm |
| Bruker APEXII CCD diffractometer | 1732 independent reflections |
| Radiation source: sealed X-ray tube | 1569 reflections with |
| Graphite monochromator | |
| Detector resolution: 7.9 pixels mm-1 | θmax = 64.9°, θmin = 4.0° |
| ω scans | |
| Absorption correction: numerical (CrysAlisPro; Rigaku OD, 2018) | |
| 7078 measured reflections |
| Refinement on | Primary atom site location: structure-invariant direct methods |
| Least-squares matrix: full | Secondary atom site location: difference Fourier map |
| Hydrogen site location: inferred from neighbouring sites | |
| H-atom parameters constrained | |
| 1732 reflections | (Δ/σ)max < 0.001 |
| 146 parameters | Δρmax = 0.35 e Å−3 |
| 0 restraints | Δρmin = −0.31 e Å−3 |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Cl1 | 0.65978 (4) | 0.22748 (10) | 0.21719 (4) | 0.0258 (2) | |
| O1' | −0.06577 (11) | 0.5696 (3) | −0.19248 (10) | 0.0233 (4) | |
| H1' | −0.067187 | 0.456986 | −0.226798 | 0.035* | |
| N3 | 0.44729 (14) | 0.7995 (3) | 0.06539 (12) | 0.0218 (4) | |
| N1 | 0.61729 (14) | 0.5895 (3) | 0.11346 (12) | 0.0196 (4) | |
| N7 | 0.39848 (13) | 0.3289 (3) | 0.19580 (12) | 0.0199 (4) | |
| N9 | 0.30402 (13) | 0.6280 (3) | 0.11873 (11) | 0.0186 (4) | |
| C4 | 0.40817 (16) | 0.6422 (4) | 0.11001 (13) | 0.0178 (5) | |
| C5 | 0.46564 (16) | 0.4569 (4) | 0.15808 (13) | 0.0168 (5) | |
| C3' | 0.12604 (16) | 0.5194 (4) | −0.07173 (14) | 0.0201 (5) | |
| H3'A | 0.090406 | 0.436047 | −0.031431 | 0.024* | |
| H3'B | 0.179230 | 0.424010 | −0.090614 | 0.024* | |
| C6 | 0.57424 (16) | 0.4399 (4) | 0.15774 (13) | 0.0180 (5) | |
| C8 | 0.30351 (16) | 0.4385 (4) | 0.16970 (14) | 0.0192 (5) | |
| H8 | 0.240264 | 0.389301 | 0.185165 | 0.023* | |
| C2 | 0.55210 (18) | 0.7598 (4) | 0.07007 (15) | 0.0223 (5) | |
| H2 | 0.584609 | 0.865250 | 0.038801 | 0.027* | |
| C2' | 0.04431 (16) | 0.6477 (4) | −0.15487 (14) | 0.0177 (5) | |
| H2' | 0.077386 | 0.673588 | −0.206946 | 0.021* | |
| C4' | 0.17237 (18) | 0.7495 (4) | −0.03173 (15) | 0.0216 (5) | |
| H4' | 0.231950 | 0.796287 | −0.058547 | 0.026* | |
| C6' | 0.21115 (17) | 0.7800 (4) | 0.07552 (15) | 0.0208 (5) | |
| H6'A | 0.234806 | 0.936928 | 0.091463 | 0.025* | |
| H6'B | 0.149539 | 0.747512 | 0.100968 | 0.025* | |
| C5' | 0.05979 (17) | 0.8537 (4) | −0.09087 (15) | 0.0217 (5) | |
| H5'A | 0.005170 | 0.866225 | −0.056036 | 0.026* | |
| H5'B | 0.066593 | 0.996160 | −0.122717 | 0.026* |
| Cl1 | 0.0169 (3) | 0.0313 (4) | 0.0291 (3) | 0.0052 (2) | 0.0069 (2) | 0.0101 (2) |
| O1' | 0.0144 (7) | 0.0311 (10) | 0.0231 (8) | −0.0006 (6) | 0.0037 (6) | −0.0095 (7) |
| N3 | 0.0217 (9) | 0.0229 (11) | 0.0184 (9) | −0.0037 (8) | 0.0027 (7) | 0.0013 (8) |
| N1 | 0.0194 (9) | 0.0206 (10) | 0.0183 (8) | −0.0042 (8) | 0.0051 (7) | −0.0005 (8) |
| N7 | 0.0155 (9) | 0.0260 (11) | 0.0177 (8) | −0.0011 (8) | 0.0045 (7) | 0.0024 (8) |
| N9 | 0.0142 (8) | 0.0232 (11) | 0.0160 (8) | 0.0021 (8) | 0.0013 (7) | −0.0017 (8) |
| C4 | 0.0169 (10) | 0.0206 (12) | 0.0129 (9) | −0.0030 (9) | 0.0004 (8) | −0.0016 (8) |
| C5 | 0.0156 (9) | 0.0207 (12) | 0.0121 (9) | −0.0022 (8) | 0.0014 (7) | −0.0014 (8) |
| C3' | 0.0188 (10) | 0.0231 (12) | 0.0177 (10) | 0.0034 (9) | 0.0045 (8) | −0.0013 (9) |
| C6 | 0.0160 (10) | 0.0219 (12) | 0.0134 (9) | −0.0010 (9) | 0.0006 (8) | −0.0002 (9) |
| C8 | 0.0159 (10) | 0.0234 (13) | 0.0177 (9) | −0.0013 (9) | 0.0045 (8) | 0.0003 (9) |
| C2 | 0.0230 (11) | 0.0232 (13) | 0.0193 (10) | −0.0064 (9) | 0.0047 (9) | 0.0015 (9) |
| C2' | 0.0134 (9) | 0.0220 (12) | 0.0165 (10) | 0.0005 (9) | 0.0031 (8) | −0.0007 (9) |
| C4' | 0.0186 (11) | 0.0249 (13) | 0.0194 (11) | 0.0010 (9) | 0.0035 (9) | 0.0009 (9) |
| C6' | 0.0193 (11) | 0.0209 (12) | 0.0194 (10) | 0.0043 (9) | 0.0021 (8) | 0.0000 (9) |
| C5' | 0.0206 (10) | 0.0223 (13) | 0.0185 (10) | 0.0032 (9) | 0.0011 (8) | 0.0001 (9) |
| Cl1—C6 | 1.723 (2) | C3'—C2' | 1.544 (3) |
| O1'—C2' | 1.415 (2) | C3'—H3'A | 0.9900 |
| O1'—H1' | 0.8400 | C3'—H3'B | 0.9900 |
| N3—C4 | 1.332 (3) | C8—H8 | 0.9500 |
| N3—C2 | 1.335 (3) | C2—H2 | 0.9500 |
| N1—C6 | 1.325 (3) | C2'—C5' | 1.528 (3) |
| N1—C2 | 1.342 (3) | C2'—H2' | 1.0000 |
| N7—C8 | 1.321 (3) | C4'—C6' | 1.520 (3) |
| N7—C5 | 1.388 (3) | C4'—C5' | 1.556 (3) |
| N9—C8 | 1.362 (3) | C4'—H4' | 1.0000 |
| N9—C4 | 1.374 (3) | C6'—H6'A | 0.9900 |
| N9—C6' | 1.469 (3) | C6'—H6'B | 0.9900 |
| C4—C5 | 1.393 (3) | C5'—H5'A | 0.9900 |
| C5—C6 | 1.388 (3) | C5'—H5'B | 0.9900 |
| C3'—C4' | 1.539 (3) | ||
| C2'—O1'—H1' | 109.5 | N3—C2—H2 | 116.0 |
| C4—N3—C2 | 111.81 (19) | N1—C2—H2 | 116.0 |
| C6—N1—C2 | 117.32 (17) | O1'—C2'—C5' | 115.42 (17) |
| C8—N7—C5 | 103.39 (18) | O1'—C2'—C3' | 119.16 (18) |
| C8—N9—C4 | 106.00 (17) | C5'—C2'—C3' | 88.88 (16) |
| C8—N9—C6' | 127.78 (17) | O1'—C2'—H2' | 110.6 |
| C4—N9—C6' | 126.10 (18) | C5'—C2'—H2' | 110.6 |
| N3—C4—N9 | 127.7 (2) | C3'—C2'—H2' | 110.6 |
| N3—C4—C5 | 126.60 (19) | C6'—C4'—C3' | 118.02 (19) |
| N9—C4—C5 | 105.69 (18) | C6'—C4'—C5' | 118.75 (18) |
| C6—C5—N7 | 134.5 (2) | C3'—C4'—C5' | 88.05 (16) |
| C6—C5—C4 | 114.87 (19) | C6'—C4'—H4' | 110.1 |
| N7—C5—C4 | 110.64 (17) | C3'—C4'—H4' | 110.1 |
| C4'—C3'—C2' | 86.87 (17) | C5'—C4'—H4' | 110.1 |
| C4'—C3'—H3'A | 114.2 | N9—C6'—C4' | 109.58 (17) |
| C2'—C3'—H3'A | 114.2 | N9—C6'—H6'A | 109.8 |
| C4'—C3'—H3'B | 114.2 | C4'—C6'—H6'A | 109.8 |
| C2'—C3'—H3'B | 114.2 | N9—C6'—H6'B | 109.8 |
| H3'A—C3'—H3'B | 111.3 | C4'—C6'—H6'B | 109.8 |
| N1—C6—C5 | 121.3 (2) | H6'A—C6'—H6'B | 108.2 |
| N1—C6—Cl1 | 117.18 (15) | C2'—C5'—C4' | 86.82 (16) |
| C5—C6—Cl1 | 121.52 (16) | C2'—C5'—H5'A | 114.2 |
| N7—C8—N9 | 114.28 (18) | C4'—C5'—H5'A | 114.2 |
| N7—C8—H8 | 122.9 | C2'—C5'—H5'B | 114.2 |
| N9—C8—H8 | 122.9 | C4'—C5'—H5'B | 114.2 |
| N3—C2—N1 | 128.1 (2) | H5'A—C5'—H5'B | 111.3 |
| H··· | ||||
| O1′—H1′···N7i | 0.84 | 2.03 | 2.853 (3) | 168 |
| C8—H8···O1′ii | 0.95 | 2.27 | 3.148 (2) | 153 |
| C2—H2···N3iii | 0.95 | 2.48 | 3.311 (3) | 146 |
| C2′—H2′··· | 0.99 | 2.84 | 3.628 (2) | 136 |