Literature DB >> 31391955

Crystal structures of the synthetic inter-mediate 3-[(6-chloro-7H-purin-7-yl)meth-yl]cyclo-butan-1-one, and of two oxetanocin derivatives: 3-[(6-chloro-8,9-di-hydro-7H-purin-7-yl)meth-yl]cyclo-butan-1-ol and 3-[(6-chloro-9H-purin-9-yl)meth-yl]cyclo-butan-1-ol.

Ayat Yaseen1, Muhammad Murtaza Hassan1, Edward Lee-Ruff1, Gerald F Audette1.   

Abstract

The crystal structures of an inter-mediate, C10H9ClN4O, 3-[(6-chloro-7H-purin-7-yl)meth-yl]cyclo-butan-1-one (I), and two N-7 and N-9 regioisomeric oxetanocin nucleoside analogs, C10H13ClN4O, 3-[(6-chloro-8,9-di-hydro-7H-purin-7-yl)meth-yl]cyclo-butan-1-ol (II) and C10H11ClN4O, 3-[(6-chloro-9H-purin-9-yl)meth-yl]cyclo-butan-1-ol (IV), are reported. The crystal structures of the nucleoside analogs confirmed the reduction of the N-7- and N-9-substituted cyclo-butano-nes with LiAl(OtBu)3 to occur with facial selectivity, yielding cis-nucleosides analogs similar to those found in nature. Reduction of the purine ring of the N-7 cyclo-butanone to a di-hydro-purine was observed for compound (II) but not for the purine ring of the N-9 cyclo-butanone on formation of compound (IV). In the crystal of (I), mol-ecules are linked by a weak Cl⋯O inter-action, forming a 21 helix along [010]. The helices are linked by offset π-π inter-actions [inter-centroid distance = 3.498 (1) Å], forming layers parallel to (101). In the crystal of (II), mol-ecules are linked by pairs of O-H⋯N hydrogen bonds, forming inversion dimers with an R 2 2(8) ring motif. The dimers are linked by O-H⋯N hydrogen bonds, forming chains along [001], which in turn are linked by C-H⋯π and offset π-π inter-actions [inter-centroid distance = 3.509 (1) Å], forming slabs parallel to the ac plane. In the crystal of (IV), mol-ecules are linked by O-H⋯N hydrogen bonds, forming chains along [101]. The chains are linked by C-H⋯N and C-H⋯O hydrogen bonds and C-H⋯π and offset π-π inter-actions [inter-centroid distance = 3.364 (1) Å], forming a supra-molecular framework.

Entities:  

Keywords:  HIV; crystal structure; cyclo­butanol; cyclo­butanone; hydrogen bonding; offset π–π inter­actions; oxetonacin; supra­molecular framework

Year:  2019        PMID: 31391955      PMCID: PMC6658957          DOI: 10.1107/S2056989019004432

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Chemical context

Derivatives of naturally occurring nucleotides are an emerging class of anti­viral therapeutics that are used to target tumors, herpes virus and the human immunodeficiency virus (HIV) (De Clercq, 2005 ▸). The development of new and different nucleoside analogs is important in combating drug-resistant mutants and increasing therapeutic effectivity. The naturally occurring oxetanocin A, a nucleoside analog, demonstrated efficacy against herpes and HIV (Hoshino et al., 1987 ▸). Further exploration of oxetanocin A derivatives such as cyclo­but-A and cyclo­but-B (Lobucavir) represented an increase in potency and metabolic stability (Hoshino et al., 1987 ▸; Bisacchi et al., 1991 ▸). The current study focuses on the structural characterization of two nucleoside analogs, (II) and (IV), as well as the purinyl-cyclo­butanone inter­mediate (I), prior to reduction.

Structural commentary

The mol­ecular structures of compounds (I), (II) and (IV) are illustrated in Figs. 1 ▸, 2 ▸ and 3 ▸, respectively. In compounds (I) and (II) there is a short intra­molecular C—H⋯Cl inter­action present (Tables 1 ▸ and 2 ▸, respectively).
Figure 1

The mol­ecular structure of compound (I), with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level. The intra­molecular C—H⋯Cl inter­action (Table 1 ▸) is shown as a thin dashed line.

Figure 2

The mol­ecular structure of compound (II), with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level. The intra­molecular C—H⋯Cl inter­action (Table 2 ▸) is shown as a thin dashed line. The minor fraction of the disordered atoms C4′ and C6′, i.e. C4′B and 6′B, are shown with dashed bonds.

Figure 3

The mol­ecular structure of compound (IV), with the atom labelling. Displacement ellipsoids are drawn at the 50% probability level.

Table 1

Hydrogen-bond geometry (Å, °) for (I)

D—H⋯A D—HH⋯A DA D—H⋯A
C6′—H6′B⋯Cl10.992.663.407 (2)132
Table 2

Hydrogen-bond geometry (Å, °) for (II)

Cg1 is the centroid of the N1/C2/N3/C4/C5/C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
C6′—H6′2⋯Cl10.992.643.390 (3)132
N9—H9⋯N3i 0.83 (2)2.14 (2)2.952 (2)166 (2)
O1′—H1′⋯N1ii 0.84 (3)2.09 (3)2.909 (2)164 (3)
C4′—H4′⋯Cg1iii 0.992.873.857 (3)170

Symmetry codes: (i) ; (ii) ; (iii) .

In compound (I) the purine ring is attached to the cyclo­butanone unit through atom N7, rendering the attachment cis to the chlorine atom bound to the aromatic ring at the C6 position. The mean plane of the cyclo­butane ring (A = C2′–C5′) is inclined to the mean plane of the purine ring system (B = N1/N37N7/N9/C2/C4/C5/C6/C8) by 52.62 (11)°, while the torsion angle N7—C5′—C4′⋯C2′ is ca 125.4°. Reduction of compound (I) with lithium tri-tert-but­oxy­aluminum hydride lead to the formation of the oxetanocin derivative compound (II). Here the the mean plane of the cyclo­butanol ring (A) is inclined to the mean plane of the purine ring system (B) by 26.37 (15)°, while the torsion angle N7—C5′—C4′⋯C2′ is ca 120.0°. Atoms C6′ and C4′ are positionally disordered and were split giving a refined occupancy ratio for C6′:C6′B and C4′:C4′B of 0.858 (4):0.142 (4) (Fig. 2 ▸). In compound (IV), the cyclo­butanol ring is attached to atom N9 of the purine ring (Fig. 3 ▸). As a result of the trans positioning of the cyclo­butanol unit, there are no intra­molecular hydrogen bonds between the chlorine atom and the cyclo­butanol or methyl­ene connector as observed in compounds (I) and (II). Here, the mean plane of the cyclo­butanol ring (A) is inclined to the mean plane of the purine ring system (B) by 71.20 (13)°, and the torsion angle N7—C5′—C4′⋯C2′ is ca 144.8°. Reduction of the purine ring of the N-7 cyclo­butanone to a di­hydro­purine was observed for compound (II) but not for the purine ring of the N-9 cyclo­butanone on formation of compound (IV). This is confirmed by the values of the bond lengths and bond angles involving atom C8; see Table 3 ▸. Similar over-reductions of purine derivatives can be found in the literature, where electron-deficient purines are dearomatized by NaBH4 to a di­hydro­purine (Aarhus et al., 2014 ▸). We speculate the reason for over-reduction of the N-7 ketone may be due to the strain associated with the system. N-7 alkyl­ation forces the chlorine of the purine ring to be oriented towards the cyclo­butanone ring, which increases the strain energy of the system. This strain energy is released when the rigid aromatic structure of the purine is reduced to a more flexible di­hydro­purine (sp 2 C8 to sp 3 C8). This strained orientation is not observed for the N-9 ketone, hence the integrity of its purine ring is preserved.
Table 3

Hydrogen-bond geometry (Å, °) for (IV)

Cg1 is the centroid of the N1/C2/N3/C4/C5/C6 ring.

D—H⋯A D—HH⋯A DA D—H⋯A
O1′—H1′⋯N7i 0.842.032.853 (3)168
C8—H8⋯O1′ii 0.952.273.148 (2)153
C2—H2⋯N3iii 0.952.483.311 (3)146
C2′—H2′⋯Cg1iv 0.992.843.628 (2)136

Symmetry codes: (i) ; (ii) ; (iii) ; (iv) .

Supra­molecular features

In the crystal of (I), mol­ecules are linked by a weak Cl⋯O inter­action [Cl1⋯O1′(−x + 1, y − , −z + ) = 3.180 (2) Å], forming a 21 helix along [010], see Fig. 4 ▸. The helices are linked by offset π-π- inter­actions, forming layers parallel to (101): CgB⋯CgB i = 3.498 (1) Å, CgB is the centroid of the purine ring system, α = 0.00 (5) Å, β = 21.6°, inter­planar distance = 3.252 (1) Å, offset = 1.289 Å, symmetry code (i) −x + 2, −y + 1, −z + 1.
Figure 4

Crystal packing of compound (I), viewed normal to (101). The weak inter­molecular Cl⋯O inter­actions are shown as dashed lines. For clarity, the C-bound H atoms have been omitted.

In the crystal of (II), mol­ecules are linked by pairs of N—H⋯N hydrogen bonds, forming inversion dimers with an (8) ring motif (Table 2 ▸ and Fig. 5 ▸). The dimers are linked by O—H⋯N hydrogen bonds, forming ribbons along [001], which in turn are linked by C—H⋯π (Table 2 ▸) and offset π–π inter­actions, forming slabs parallel to the ac plane. [Details of the offset π–π inter­actions: CgB⋯CgB v = 3.498 (1) Å, CgB is the centroid of the purine ring system, α = 0.00 (5) Å, β = 21.6°, inter­planar distance = 3.252 (1) Å, offset = 1.289 Å, symmetry code (v) −x + 2, −y + 1, −z + 1.]
Figure 5

Crystal packing of compound (II), viewed along the b axis. The N—H⋯N and O—H⋯N hydrogen bonds (Table 2 ▸) are shown as dashed lines. For clarity, the C-bound H atoms have been omitted. The minor components of the disordered atoms C4′ and C6′ (i.e. C4′B and 6′B) have been omitted.

In the crystal of (IV), mol­ecules are linked by O—H⋯N hydrogen bonds (Table 3 ▸), forming chains along direction [101]. The chains are linked by C—H⋯O and C—H⋯N hydrogen bonds, and C—H⋯π (Table 4 ▸) and offset π–π inter­actions, forming a supra­molecular framework (see Fig. 6 ▸). [Details of the offset π–π inter­actions: CgB⋯CgB vi = 3.534 (1) Å, CgB is the centroid of the purine ring system, α = 0.02 (10) Å, β = 17.8°, inter­planar distance = 3.364 (1) Å, offset = 1.08 Å, symmetry code (vi) −x + 1, −y + 1, −z. ]
Table 4

Geometric parameters (Å, °) about atom C8 for compounds (I), (II) and (IV)

Bond/angle(I)(II)(IV)
C8—N71.381 (2)1.471 (3)1.362 (3)
C8—N91.301 (2)1.455 (3)1.321 (3)
N7—C8—N9114.95 (15)103.41 (15)114.28 (18)
Figure 6

Crystal packing of compound (IV), viewed along the b axis. The various hydrogen bonds (Table 3 ▸) are shown as dashed lines. For clarity, only the H atoms involved in these inter­actions have been included.

Database survey

A search of the Cambridge Structural Database (CSD, Version 5.40, update February 2019; Groom et al., 2016 ▸) found two related structure, viz. 6-chloro-9-(3-hy­droxy­methyl-3-hy­droxy­cyclo­but­yl)purine (CSD refcode SOGROV; Boumchita et al., 1991 ▸)) and cis-1-bromo­methyl-3-(6-chloro-9H-purin-yl)cyclo­butanol (ZUMHAQ; Gharbaoui et al., 1995 ▸). The coordinates are not available for either structure.

Synthesis and crystallization

Synthesis of compounds (I) Potassium carbonate (12.0 mmol) was added to a solution of (3-oxo­cyclo­but­yl)methyl benzoate (10.0 mmol) in methanol (20 ml) and stirred for 1 h at room temperature. Saturated sodium bicarbonate (10.0 ml) was added and stirring continued for an additional 15 min. The solvent was evaporated under vacuum, followed by purification by flash column chromatography with ethyl acetate, resulting in 3-(hy­droxy­meth­yl)cyclo­butan-1-one in 70% yield. 3-(Hy­droxy­meth­yl)cyclo­butan-1-one (1 mmol) was dissolved in 10 ml of dry di­chloro­methane and cooled to 195 K. Hunig’s base (3.2 mmol) was added, followed by tri­fluoro­methane­sulfonic anhydride (1 mmol) and the mixture was stirred for 10 min, cooled to 273 K and stirred to obtain the qualitative conversion to (3-oxo­cyclo­but­yl)methyl tri­fluoro­methane­sulfonate. The (3-oxo­cyclo­but­yl)methyl tri­fluoro­methane­sulfonate (5.61 mmol) was added to a mixture containing 6-chloro-7H-purine (5.61 mmol), potassium hydroxide (5.61 mmol), tris­[2-(2-meth­oxy­eth­oxy)eth­yl]amine (0.28 mmol), magnesium sulfate (2 g) and anhydrous aceto­nitrile (100 ml), which was then heated to 333 K for 5 h and cooled to room temperature. The product was purified using 5% methanol and 5% tri­methyl­amine in chloro­form, which yielded two UV-active compounds. The two UV-active compounds were separated using flash column chromatography with ethyl acetate, giving 51% of the N-9 alkyl­ated derivative; 3-[(6-chloro-9H-purin-9-yl)meth­yl]cyclo­butan-1-one (III) and 37% of the N-7 alkyl­ated deriv­ative 3-[(6-chloro-7H-purin-7-yl)meth­yl]cyclo­butan-1-one (I). Synthesis of 3-[(6-chloro-8,9-di­hydro-7 -purin-7-yl)meth­yl]cyclo­butan-1-ol (II) 3-[(6-Chloro-7H-purin-7-yl)meth­yl]cyclo­butan-1-one (I) (0.21 mmol) in di­chloro­methane (10 ml) was cooled to 195 K and lithium tri-tert-but­oxy­aluminum hydride was added. The mixture was cooled to room temperature and sodium borohydride (0.32 mmol) was added and the resulting mixture allowed to stir overnight. Methanol (2 ml) was added and the mixture allowed to stir overnight to convert the over-reduced 3-[(6-chloro-7H-purin-7-yl]meth­yl)cyclo­butanone(I) to 3-[(6-chloro-8,9-di­hydro-7H-purin-7-yl)meth­yl]cyclo­butan-1-ol (II). Synthesis of -3-[(6-chloro-9 -purin-9-yl)meth­yl]cyclo­butan-1-ol (IV) 3-[(6-Chloro-9H-purin-9-yl)meth­yl]cyclo­butan-1-one (III) (0.21 mmol) was added to diethyl ether and cooled to 195 K and lithium tri-tert-but­oxy­aluminum hydride (0.32 mmol) was added. The reaction was allowed to warm to room temperature and left to stir overnight, which provided qu­anti­tative conversion to cis-3-[(6-chloro-9H-purin-9-yl)meth­yl]cyclo­butan-1-ol (IV). Crystallization was achieved through evaporation over three days with tetra­hydro­furan as the solvent. Pale-yellow plate-like crystals of (I), suitable for X-ray diffraction analysis, were obtained by slow evaporation of a solution in di­chloro­methane and heptane. Colourless plate-like crystals of (II), were obtained by slow evaporation of a solution in methanol, di­chloro­methane and diethyl ether (1:1:1, 9 ml). Colorless plate-like crystals of (IV), were obtained by slow evaporation of a solution in methanol (3 ml) .

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 5 ▸. For all three compounds, C-bound H atoms were placed in calculated positions and refined as riding: C—H = 0.95–0.99 Å with U iso(H) = 1.2U eq(C). For compound (II), the OH and NH H atoms were located in a difference-Fourier map. While the OH H atom was freely refined the NH H atom was refined with a distance restraint: N—H = 0.86 (2) Å. For compound (IV), the OH H atom was located in a difference-Fourier map and freely refined. In compound (II), atoms C6′ and C4′ are positionally disordered and were split giving a refined occupancy ratio for C6′:C6′B and C4′:C4′B of 0.858 (4):0.142 (4). For the final refinement of compound (II) three most disagreeable reflections (31, 32, 70) were omitted, and for the final refinement of compound (IV) four most disagreeable reflections (58, 66, 57, 67) were omitted.
Table 5

Experimental details

 (I)(II)(IV)
Crystal data
Chemical formulaC10H9ClN4OC10H13ClN4OC10H11ClN4O
M r 236.66240.69238.68
Crystal system, space groupMonoclinic, P21/c Triclinic, P Monoclinic, P21/n
Temperature (K)110110110
a, b, c (Å)11.9736 (5), 6.8854 (4), 12.2746 (5)6.1101 (4), 8.6075 (5), 11.0083 (7)12.7276 (8), 5.9725 (4), 14.819 (1)
α, β, γ (°)90, 92.938 (4), 9068.957 (6), 83.799 (5), 87.189 (5)90, 108.250 (3), 90
V3)1010.63 (8)537.15 (6)1069.81 (12)
Z 424
Radiation typeMo KαCu KαCu Kα
μ (mm−1)0.363.033.04
Crystal size (mm)0.43 × 0.21 × 0.040.44 × 0.30 × 0.120.50 × 0.21 × 0.07
 
Data collection
DiffractometerBruker APEXII CCDBruker–Nonius Kappa CCDBruker APEXII CCD
Absorption correctionMulti-scan (CrysAlis PRO; Rigaku OD, 2018)Multi-scan (CrysAlis PRO; Rigaku OD, 2018)Numerical (CrysAlis PRO; Rigaku OD, 2018)
T min, T max 0.661, 1.0000.771, 1.0000.043, 0.741
No. of measured, independent and observed [I > 2σ(I)] reflections35539, 2508, 22179261, 1793, 16817078, 1732, 1569
R int 0.0460.0280.045
(sin θ/λ)max−1)0.6670.5920.587
 
Refinement
R[F 2 > 2σ(F 2)], wR(F 2), S 0.043, 0.111, 1.070.037, 0.098, 1.070.038, 0.103, 0.94
No. of reflections250817931732
No. of parameters145160146
No. of restraints010
H-atom treatmentH-atom parameters constrainedH atoms treated by a mixture of independent and constrained refinementH-atom parameters constrained
Δρmax, Δρmin (e Å−3)0.60, −0.280.71, −0.270.35, −0.31

Computer programs: CrysAlis PRO (Rigaku OD, 2018 ▸), SHELXS (Sheldrick, 2008 ▸), SHELXL (Sheldrick, 2015 ▸), PLATON (Spek, 2009 ▸) and Mercury (Macrae et al., 2008 ▸), OLEX2 (Dolomanov et al., 2009 ▸), PLATON (Spek, 2009 ▸) and publCIF (Westrip, 2010 ▸).

Crystal structure: contains datablock(s) global, I, II, IV. DOI: 10.1107/S2056989019004432/zp2033sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989019004432/zp2033Isup2.hkl Structure factors: contains datablock(s) II. DOI: 10.1107/S2056989019004432/zp2033IIsup3.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989019004432/zp2033IIsup5.cml CCDC references: 1907200, 1907199, 1907198 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H9ClN4OF(000) = 488
Mr = 236.66Dx = 1.555 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 11.9736 (5) ÅCell parameters from 9903 reflections
b = 6.8854 (4) Åθ = 3.3–32.6°
c = 12.2746 (5) ŵ = 0.36 mm1
β = 92.938 (4)°T = 110 K
V = 1010.63 (8) Å3Plate, pale_yellow
Z = 40.43 × 0.21 × 0.04 mm
Bruker APEXII CCD diffractometer2508 independent reflections
Radiation source: sealed X-ray tube2217 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.046
ω scansθmax = 28.3°, θmin = 3.3°
Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2018)h = −15→15
Tmin = 0.661, Tmax = 1.000k = −9→9
35539 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.043Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.111H-atom parameters constrained
S = 1.07w = 1/[σ2(Fo2) + (0.0508P)2 + 0.9477P] where P = (Fo2 + 2Fc2)/3
2508 reflections(Δ/σ)max < 0.001
145 parametersΔρmax = 0.60 e Å3
0 restraintsΔρmin = −0.28 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Cl10.70136 (4)0.21385 (7)0.52904 (4)0.02685 (14)
N10.81306 (13)0.2530 (2)0.35301 (12)0.0230 (3)
N30.93051 (12)0.5196 (2)0.30500 (11)0.0219 (3)
N70.84068 (11)0.6388 (2)0.56456 (11)0.0183 (3)
N90.95030 (12)0.7744 (2)0.44062 (12)0.0216 (3)
O1'0.43878 (13)0.6449 (3)0.76126 (16)0.0503 (5)
C2'0.53242 (16)0.6753 (3)0.73657 (17)0.0303 (4)
C3'0.64220 (16)0.7042 (3)0.80129 (15)0.0297 (4)
H3'A0.6705980.5857400.8390750.036*
H3'B0.6424610.8164810.8516950.036*
C4'0.69801 (14)0.7464 (3)0.69174 (14)0.0215 (4)
H4'0.7203280.8858050.6855330.026*
C5'0.58520 (15)0.7032 (3)0.62724 (16)0.0297 (4)
H5'A0.5547630.8148700.5844830.036*
H5'B0.5862950.5841320.5820800.036*
C6'0.79428 (14)0.6106 (3)0.67259 (12)0.0198 (3)
H6'A0.8541600.6321560.7299570.024*
H6'B0.7682620.4747990.6787460.024*
C20.88240 (14)0.3491 (3)0.28787 (13)0.0230 (4)
H20.8983770.2859130.2216490.028*
C40.90857 (13)0.6006 (3)0.40103 (13)0.0183 (3)
C50.83895 (13)0.5123 (2)0.47653 (12)0.0176 (3)
C60.79181 (14)0.3358 (3)0.44645 (13)0.0198 (3)
C80.90917 (14)0.7900 (3)0.53629 (14)0.0205 (3)
H80.9250730.8973560.5831670.025*
U11U22U33U12U13U23
Cl10.0305 (2)0.0264 (2)0.0241 (2)−0.00833 (17)0.00535 (16)0.00170 (17)
N10.0231 (7)0.0246 (8)0.0213 (7)0.0002 (6)0.0002 (6)−0.0029 (6)
N30.0215 (7)0.0272 (8)0.0173 (7)0.0026 (6)0.0046 (5)0.0014 (6)
N70.0202 (7)0.0202 (7)0.0146 (6)0.0007 (5)0.0030 (5)0.0009 (5)
N90.0213 (7)0.0210 (7)0.0229 (7)−0.0006 (6)0.0036 (5)0.0027 (6)
O1'0.0302 (8)0.0585 (12)0.0639 (11)−0.0075 (8)0.0186 (8)0.0010 (9)
C2'0.0257 (9)0.0282 (10)0.0377 (10)0.0011 (7)0.0102 (8)−0.0006 (8)
C3'0.0284 (9)0.0409 (12)0.0207 (8)0.0025 (8)0.0091 (7)0.0002 (8)
C4'0.0198 (8)0.0263 (9)0.0187 (8)0.0019 (6)0.0046 (6)0.0022 (6)
C5'0.0215 (8)0.0425 (12)0.0251 (9)0.0037 (8)0.0000 (7)−0.0010 (8)
C6'0.0228 (8)0.0253 (9)0.0116 (7)0.0016 (7)0.0033 (6)0.0011 (6)
C20.0229 (8)0.0301 (9)0.0162 (7)0.0041 (7)0.0021 (6)−0.0038 (7)
C40.0177 (7)0.0204 (8)0.0168 (7)0.0022 (6)0.0003 (6)0.0037 (6)
C50.0179 (7)0.0213 (8)0.0135 (7)0.0035 (6)0.0004 (6)0.0011 (6)
C60.0195 (7)0.0223 (8)0.0175 (7)0.0007 (6)0.0015 (6)0.0039 (6)
C80.0205 (7)0.0176 (8)0.0232 (8)0.0009 (6)−0.0014 (6)−0.0022 (6)
Cl1—C61.7372 (17)C3'—H3'A0.9900
N1—C61.317 (2)C3'—H3'B0.9900
N1—C21.354 (2)C4'—C6'1.512 (2)
N3—C21.320 (2)C4'—C5'1.559 (2)
N3—C41.342 (2)C4'—H4'1.0000
N7—C81.381 (2)C5'—H5'A0.9900
N7—C51.387 (2)C5'—H5'B0.9900
N7—C6'1.4765 (19)C6'—H6'A0.9900
N9—C81.301 (2)C6'—H6'B0.9900
N9—C41.376 (2)C2—H20.9500
O1'—C2'1.195 (2)C4—C51.415 (2)
C2'—C3'1.514 (3)C5—C61.382 (2)
C2'—C5'1.524 (3)C8—H80.9500
C3'—C4'1.559 (2)
C6—N1—C2117.04 (16)C2'—C5'—H5'B114.0
C2—N3—C4113.96 (15)C4'—C5'—H5'B114.0
C8—N7—C5105.24 (13)H5'A—C5'—H5'B111.2
C8—N7—C6'125.49 (14)N7—C6'—C4'112.54 (14)
C5—N7—C6'128.74 (15)N7—C6'—H6'A109.1
C8—N9—C4104.09 (14)C4'—C6'—H6'A109.1
O1'—C2'—C3'133.7 (2)N7—C6'—H6'B109.1
O1'—C2'—C5'133.0 (2)C4'—C6'—H6'B109.1
C3'—C2'—C5'93.29 (14)H6'A—C6'—H6'B107.8
C2'—C3'—C4'88.33 (14)N3—C2—N1128.03 (16)
C2'—C3'—H3'A113.9N3—C2—H2116.0
C4'—C3'—H3'A113.9N1—C2—H2116.0
C2'—C3'—H3'B113.9N3—C4—N9126.01 (15)
C4'—C3'—H3'B113.9N3—C4—C5123.02 (16)
H3'A—C3'—H3'B111.1N9—C4—C5110.96 (14)
C6'—C4'—C5'116.77 (16)C6—C5—N7138.56 (15)
C6'—C4'—C3'112.49 (15)C6—C5—C4116.68 (15)
C5'—C4'—C3'90.22 (14)N7—C5—C4104.75 (14)
C6'—C4'—H4'111.9N1—C6—C5121.22 (16)
C5'—C4'—H4'111.9N1—C6—Cl1116.95 (14)
C3'—C4'—H4'111.9C5—C6—Cl1121.83 (13)
C2'—C5'—C4'87.96 (14)N9—C8—N7114.95 (15)
C2'—C5'—H5'A114.0N9—C8—H8122.5
C4'—C5'—H5'A114.0N7—C8—H8122.5
O1'—C2'—C3'—C4'−175.7 (3)C8—N7—C5—C6179.2 (2)
C5'—C2'—C3'—C4'3.32 (16)C6'—N7—C5—C67.2 (3)
C2'—C3'—C4'—C6'−122.53 (16)C8—N7—C5—C40.10 (17)
C2'—C3'—C4'—C5'−3.24 (16)C6'—N7—C5—C4−171.83 (15)
O1'—C2'—C5'—C4'175.7 (3)N3—C4—C5—C6−0.8 (2)
C3'—C2'—C5'—C4'−3.32 (16)N9—C4—C5—C6−179.83 (14)
C6'—C4'—C5'—C2'118.72 (16)N3—C4—C5—N7178.47 (15)
C3'—C4'—C5'—C2'3.22 (15)N9—C4—C5—N7−0.52 (18)
C8—N7—C6'—C4'76.0 (2)C2—N1—C6—C5−0.4 (2)
C5—N7—C6'—C4'−113.61 (19)C2—N1—C6—Cl1179.16 (13)
C5'—C4'—C6'—N772.5 (2)N7—C5—C6—N1−177.58 (18)
C3'—C4'—C6'—N7174.86 (15)C4—C5—C6—N11.4 (2)
C4—N3—C2—N12.1 (3)N7—C5—C6—Cl12.9 (3)
C6—N1—C2—N3−1.5 (3)C4—C5—C6—Cl1−178.08 (12)
C2—N3—C4—N9178.09 (16)C4—N9—C8—N7−0.70 (19)
C2—N3—C4—C5−0.8 (2)C5—N7—C8—N90.4 (2)
C8—N9—C4—N3−178.22 (16)C6'—N7—C8—N9172.66 (15)
C8—N9—C4—C50.74 (18)
D—H···AD—HH···AD···AD—H···A
C6′—H6′B···Cl10.992.663.407 (2)132
C4′—H4′···Cl1i1.002.973.7889 (19)140
C6′—H6′B···N1ii0.992.683.343 (2)124
C10H13ClN4OZ = 2
Mr = 240.69F(000) = 252
Triclinic, P1Dx = 1.488 Mg m3
a = 6.1101 (4) ÅCu Kα radiation, λ = 1.54184 Å
b = 8.6075 (5) ÅCell parameters from 8605 reflections
c = 11.0083 (7) Åθ = 4.3–65.4°
α = 68.957 (6)°µ = 3.03 mm1
β = 83.799 (5)°T = 110 K
γ = 87.189 (5)°Plate, colorless
V = 537.15 (6) Å30.44 × 0.30 × 0.12 mm
Bruker–Nonius Kappa CCD diffractometer1793 independent reflections
Radiation source: sealed X-ray tube, Enhance (Cu) X-ray Source1681 reflections with I > 2σ(I)
Detector resolution: 7.9 pixels mm-1Rint = 0.028
ω scansθmax = 66.0°, θmin = 4.3°
Absorption correction: multi-scan (CrysAlisPro; Rigaku OD, 2018)h = −7→5
Tmin = 0.771, Tmax = 1.000k = −10→10
9261 measured reflectionsl = −13→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.037Hydrogen site location: mixed
wR(F2) = 0.098H atoms treated by a mixture of independent and constrained refinement
S = 1.07w = 1/[σ2(Fo2) + (0.0479P)2 + 0.5464P] where P = (Fo2 + 2Fc2)/3
1793 reflections(Δ/σ)max < 0.001
160 parametersΔρmax = 0.71 e Å3
1 restraintΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/UeqOcc. (<1)
Cl10.16834 (8)0.41808 (6)0.40624 (5)0.02598 (19)
N10.4817 (3)0.2850 (2)0.28999 (16)0.0208 (4)
C20.6669 (3)0.2012 (3)0.28642 (19)0.0208 (4)
H20.7190700.1937950.2041610.025*
N30.7920 (3)0.1241 (2)0.38609 (16)0.0201 (4)
C40.7122 (3)0.1387 (2)0.49898 (19)0.0181 (4)
C50.5139 (3)0.2254 (2)0.51675 (19)0.0175 (4)
C60.4064 (3)0.2984 (2)0.40720 (19)0.0185 (4)
N70.4843 (3)0.2163 (2)0.64573 (16)0.0195 (4)
C80.6671 (3)0.1184 (3)0.71453 (19)0.0217 (4)
H8A0.7502750.1847680.7508300.026*
H8B0.6127780.0164170.7863890.026*
N90.8027 (3)0.0776 (2)0.61286 (16)0.0212 (4)
H90.916 (3)0.018 (3)0.627 (2)0.021 (6)*
O1'0.1576 (3)0.2578 (2)1.12373 (14)0.0278 (4)
H1'0.256 (5)0.284 (4)1.161 (3)0.045 (8)*
C2'0.2169 (4)0.3455 (3)0.9900 (2)0.0273 (5)
H2'0.2304290.4668330.9736320.033*
C3'0.4091 (4)0.2873 (3)0.9160 (2)0.0346 (6)
H3'10.4464030.1676410.9564020.041*
H3'20.5419330.3569320.8957490.041*
C5'0.0629 (4)0.3203 (3)0.8985 (2)0.0277 (5)
H5'1−0.0442860.4125240.8668790.033*
H5'2−0.0112590.2112150.9333260.033*
C4'0.2642 (4)0.3281 (3)0.7998 (2)0.0240 (6)0.858 (4)
H4'0.2886180.4458760.7395040.029*0.858 (4)
C6'0.2716 (4)0.2157 (3)0.7213 (2)0.0229 (6)0.858 (4)
H6'10.2391120.1005180.7815650.027*0.858 (4)
H6'20.1551810.2511060.6606800.027*0.858 (4)
C4'B0.246 (3)0.216 (2)0.8417 (15)0.0240 (6)0.142 (4)
H4'B0.2287330.0922430.8702060.029*0.142 (4)
C6'B0.332 (3)0.308 (2)0.7043 (15)0.0229 (6)0.142 (4)
H6'30.2062240.3450770.6508240.027*0.142 (4)
H6'40.4065210.4095220.7013600.027*0.142 (4)
U11U22U33U12U13U23
Cl10.0222 (3)0.0321 (3)0.0240 (3)0.0101 (2)−0.0049 (2)−0.0110 (2)
N10.0227 (9)0.0239 (9)0.0162 (8)0.0000 (7)−0.0018 (7)−0.0078 (7)
C20.0227 (11)0.0255 (10)0.0158 (10)−0.0004 (8)0.0012 (8)−0.0104 (8)
N30.0198 (9)0.0244 (9)0.0173 (8)0.0013 (7)0.0010 (7)−0.0100 (7)
C40.0171 (10)0.0192 (10)0.0186 (10)−0.0008 (8)−0.0003 (8)−0.0080 (8)
C50.0181 (10)0.0193 (9)0.0166 (10)−0.0025 (8)0.0006 (8)−0.0087 (8)
C60.0168 (10)0.0204 (10)0.0192 (10)0.0014 (8)−0.0004 (8)−0.0087 (8)
N70.0173 (9)0.0277 (9)0.0155 (8)0.0057 (7)−0.0014 (7)−0.0109 (7)
C80.0212 (11)0.0293 (11)0.0176 (10)0.0059 (8)−0.0036 (8)−0.0121 (8)
N90.0181 (9)0.0294 (10)0.0181 (9)0.0094 (7)−0.0038 (7)−0.0114 (7)
O1'0.0275 (9)0.0394 (9)0.0177 (7)0.0028 (7)−0.0043 (6)−0.0115 (7)
C2'0.0286 (12)0.0371 (12)0.0179 (10)−0.0017 (9)−0.0008 (9)−0.0119 (9)
C3'0.0257 (12)0.0522 (15)0.0340 (13)0.0000 (11)−0.0030 (10)−0.0253 (12)
C5'0.0250 (11)0.0400 (13)0.0215 (11)0.0119 (9)−0.0052 (9)−0.0157 (10)
C4'0.0258 (13)0.0263 (14)0.0205 (12)0.0035 (11)0.0002 (10)−0.0104 (11)
C6'0.0164 (12)0.0341 (16)0.0216 (12)0.0011 (11)0.0000 (10)−0.0147 (11)
C4'B0.0258 (13)0.0263 (14)0.0205 (12)0.0035 (11)0.0002 (10)−0.0104 (11)
C6'B0.0164 (12)0.0341 (16)0.0216 (12)0.0011 (11)0.0000 (10)−0.0147 (11)
Cl1—C61.739 (2)C2'—C3'1.524 (3)
N1—C21.317 (3)C2'—C5'1.527 (3)
N1—C61.365 (3)C2'—H2'1.0000
C2—N31.355 (3)C3'—C4'1.561 (3)
C2—H20.9500C3'—C4'B1.626 (16)
N3—C41.332 (3)C3'—H3'10.9900
C4—N91.342 (3)C3'—H3'20.9900
C4—C51.424 (3)C5'—C4'1.537 (3)
C5—C61.366 (3)C5'—C4'B1.616 (15)
C5—N71.386 (2)C5'—H5'10.9900
N7—C6'B1.440 (15)C5'—H5'20.9900
N7—C6'1.465 (3)C4'—C6'1.508 (3)
N7—C81.471 (3)C4'—H4'1.0000
C8—N91.455 (3)C6'—H6'10.9900
C8—H8A0.9900C6'—H6'20.9900
C8—H8B0.9900C4'B—C6'B1.48 (2)
N9—H90.833 (17)C4'B—H4'B1.0000
O1'—C2'1.407 (3)C6'B—H6'30.9900
O1'—H1'0.84 (3)C6'B—H6'40.9900
C2—N1—C6116.73 (17)C2'—C3'—H3'1114.0
N1—C2—N3127.76 (18)C4'—C3'—H3'1114.0
N1—C2—H2116.1C2'—C3'—H3'2114.0
N3—C2—H2116.1C4'—C3'—H3'2114.0
C4—N3—C2113.74 (17)H3'1—C3'—H3'2111.2
N3—C4—N9126.70 (19)C2'—C5'—C4'88.64 (17)
N3—C4—C5124.39 (18)C2'—C5'—C4'B92.8 (6)
N9—C4—C5108.91 (17)C2'—C5'—H5'1113.9
C6—C5—N7136.29 (19)C4'—C5'—H5'1113.9
C6—C5—C4115.33 (18)C2'—C5'—H5'2113.9
N7—C5—C4108.35 (17)C4'—C5'—H5'2113.9
N1—C6—C5122.04 (18)H5'1—C5'—H5'2111.1
N1—C6—Cl1115.38 (15)C6'—C4'—C5'118.5 (2)
C5—C6—Cl1122.56 (15)C6'—C4'—C3'120.1 (2)
C5—N7—C6'B128.7 (6)C5'—C4'—C3'87.40 (17)
C5—N7—C6'125.55 (17)C6'—C4'—H4'109.7
C5—N7—C8108.55 (16)C5'—C4'—H4'109.7
C6'B—N7—C8121.7 (6)C3'—C4'—H4'109.7
C6'—N7—C8118.33 (17)N7—C6'—C4'113.3 (2)
N9—C8—N7103.41 (15)N7—C6'—H6'1108.9
N9—C8—H8A111.1C4'—C6'—H6'1108.9
N7—C8—H8A111.1N7—C6'—H6'2108.9
N9—C8—H8B111.1C4'—C6'—H6'2108.9
N7—C8—H8B111.1H6'1—C6'—H6'2107.7
H8A—C8—H8B109.0C6'B—C4'B—C5'112.7 (13)
C4—N9—C8110.76 (17)C6'B—C4'B—C3'99.0 (12)
C4—N9—H9125.9 (17)C5'—C4'B—C3'82.6 (7)
C8—N9—H9123.2 (17)C6'B—C4'B—H4'B118.5
C2'—O1'—H1'103 (2)C5'—C4'B—H4'B118.5
O1'—C2'—C3'121.1 (2)C3'—C4'B—H4'B118.5
O1'—C2'—C5'114.52 (18)N7—C6'B—C4'B115.0 (14)
C3'—C2'—C5'89.12 (16)N7—C6'B—H6'3108.5
O1'—C2'—H2'110.1C4'B—C6'B—H6'3108.5
C3'—C2'—H2'110.1N7—C6'B—H6'4108.5
C5'—C2'—H2'110.1C4'B—C6'B—H6'4108.5
C2'—C3'—C4'87.87 (18)H6'3—C6'B—H6'4107.5
C2'—C3'—C4'B92.5 (5)
C6—N1—C2—N30.8 (3)N7—C8—N9—C4−1.3 (2)
N1—C2—N3—C4−0.3 (3)O1'—C2'—C3'—C4'138.2 (2)
C2—N3—C4—N9−178.94 (19)C5'—C2'—C3'—C4'19.78 (18)
C2—N3—C4—C50.4 (3)O1'—C2'—C3'—C4'B105.1 (6)
N3—C4—C5—C6−1.1 (3)C5'—C2'—C3'—C4'B−13.3 (6)
N9—C4—C5—C6178.36 (17)O1'—C2'—C5'—C4'−144.2 (2)
N3—C4—C5—N7−179.35 (17)C3'—C2'—C5'—C4'−20.09 (19)
N9—C4—C5—N70.1 (2)O1'—C2'—C5'—C4'B−110.7 (6)
C2—N1—C6—C5−1.6 (3)C3'—C2'—C5'—C4'B13.4 (6)
C2—N1—C6—Cl1177.14 (14)C2'—C5'—C4'—C6'142.7 (2)
N7—C5—C6—N1179.3 (2)C2'—C5'—C4'—C3'19.62 (18)
C4—C5—C6—N11.6 (3)C2'—C3'—C4'—C6'−141.4 (2)
N7—C5—C6—Cl10.7 (3)C2'—C3'—C4'—C5'−19.66 (18)
C4—C5—C6—Cl1−176.96 (14)C5—N7—C6'—C4'−135.6 (2)
C6—C5—N7—C6'B−10.1 (10)C8—N7—C6'—C4'78.4 (3)
C4—C5—N7—C6'B167.6 (10)C5'—C4'—C6'—N7−171.4 (2)
C6—C5—N7—C6'32.6 (4)C3'—C4'—C6'—N7−66.6 (3)
C4—C5—N7—C6'−149.7 (2)C2'—C5'—C4'B—C6'B−109.4 (12)
C6—C5—N7—C8−178.7 (2)C2'—C5'—C4'B—C3'−12.7 (6)
C4—C5—N7—C8−0.9 (2)C2'—C3'—C4'B—C6'B124.6 (10)
C5—N7—C8—N91.3 (2)C2'—C3'—C4'B—C5'12.7 (6)
C6'B—N7—C8—N9−168.2 (9)C5—N7—C6'B—C4'B146.2 (9)
C6'—N7—C8—N9152.69 (18)C8—N7—C6'B—C4'B−46.6 (16)
N3—C4—N9—C8−179.79 (18)C5'—C4'B—C6'B—N7−175.7 (10)
C5—C4—N9—C80.8 (2)C3'—C4'B—C6'B—N798.5 (13)
D—H···AD—HH···AD···AD—H···A
C6′—H6′2···Cl10.992.643.390 (3)132
N9—H9···N3i0.83 (2)2.14 (2)2.952 (2)166 (2)
O1′—H1′···N1ii0.84 (3)2.09 (3)2.909 (2)164 (3)
C4′—H4′···Cg1iii0.992.873.857 (3)170
C10H11ClN4OF(000) = 496
Mr = 238.68Dx = 1.482 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
a = 12.7276 (8) ÅCell parameters from 4964 reflections
b = 5.9725 (4) Åθ = 4.0–64.9°
c = 14.819 (1) ŵ = 3.04 mm1
β = 108.250 (3)°T = 110 K
V = 1069.81 (12) Å3Plate, colourless
Z = 40.50 × 0.21 × 0.07 mm
Bruker APEXII CCD diffractometer1732 independent reflections
Radiation source: sealed X-ray tube1569 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.045
Detector resolution: 7.9 pixels mm-1θmax = 64.9°, θmin = 4.0°
ω scansh = −14→14
Absorption correction: numerical (CrysAlisPro; Rigaku OD, 2018)k = −4→7
Tmin = 0.043, Tmax = 0.741l = −17→17
7078 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.038Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.103H-atom parameters constrained
S = 0.94w = 1/[σ2(Fo2) + (0.0599P)2 + 1.4189P] where P = (Fo2 + 2Fc2)/3
1732 reflections(Δ/σ)max < 0.001
146 parametersΔρmax = 0.35 e Å3
0 restraintsΔρmin = −0.31 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
xyzUiso*/Ueq
Cl10.65978 (4)0.22748 (10)0.21719 (4)0.0258 (2)
O1'−0.06577 (11)0.5696 (3)−0.19248 (10)0.0233 (4)
H1'−0.0671870.456986−0.2267980.035*
N30.44729 (14)0.7995 (3)0.06539 (12)0.0218 (4)
N10.61729 (14)0.5895 (3)0.11346 (12)0.0196 (4)
N70.39848 (13)0.3289 (3)0.19580 (12)0.0199 (4)
N90.30402 (13)0.6280 (3)0.11873 (11)0.0186 (4)
C40.40817 (16)0.6422 (4)0.11001 (13)0.0178 (5)
C50.46564 (16)0.4569 (4)0.15808 (13)0.0168 (5)
C3'0.12604 (16)0.5194 (4)−0.07173 (14)0.0201 (5)
H3'A0.0904060.436047−0.0314310.024*
H3'B0.1792300.424010−0.0906140.024*
C60.57424 (16)0.4399 (4)0.15774 (13)0.0180 (5)
C80.30351 (16)0.4385 (4)0.16970 (14)0.0192 (5)
H80.2402640.3893010.1851650.023*
C20.55210 (18)0.7598 (4)0.07007 (15)0.0223 (5)
H20.5846090.8652500.0388010.027*
C2'0.04431 (16)0.6477 (4)−0.15487 (14)0.0177 (5)
H2'0.0773860.673588−0.2069460.021*
C4'0.17237 (18)0.7495 (4)−0.03173 (15)0.0216 (5)
H4'0.2319500.796287−0.0585470.026*
C6'0.21115 (17)0.7800 (4)0.07552 (15)0.0208 (5)
H6'A0.2348060.9369280.0914630.025*
H6'B0.1495390.7475120.1009680.025*
C5'0.05979 (17)0.8537 (4)−0.09087 (15)0.0217 (5)
H5'A0.0051700.866225−0.0560360.026*
H5'B0.0665930.996160−0.1227170.026*
U11U22U33U12U13U23
Cl10.0169 (3)0.0313 (4)0.0291 (3)0.0052 (2)0.0069 (2)0.0101 (2)
O1'0.0144 (7)0.0311 (10)0.0231 (8)−0.0006 (6)0.0037 (6)−0.0095 (7)
N30.0217 (9)0.0229 (11)0.0184 (9)−0.0037 (8)0.0027 (7)0.0013 (8)
N10.0194 (9)0.0206 (10)0.0183 (8)−0.0042 (8)0.0051 (7)−0.0005 (8)
N70.0155 (9)0.0260 (11)0.0177 (8)−0.0011 (8)0.0045 (7)0.0024 (8)
N90.0142 (8)0.0232 (11)0.0160 (8)0.0021 (8)0.0013 (7)−0.0017 (8)
C40.0169 (10)0.0206 (12)0.0129 (9)−0.0030 (9)0.0004 (8)−0.0016 (8)
C50.0156 (9)0.0207 (12)0.0121 (9)−0.0022 (8)0.0014 (7)−0.0014 (8)
C3'0.0188 (10)0.0231 (12)0.0177 (10)0.0034 (9)0.0045 (8)−0.0013 (9)
C60.0160 (10)0.0219 (12)0.0134 (9)−0.0010 (9)0.0006 (8)−0.0002 (9)
C80.0159 (10)0.0234 (13)0.0177 (9)−0.0013 (9)0.0045 (8)0.0003 (9)
C20.0230 (11)0.0232 (13)0.0193 (10)−0.0064 (9)0.0047 (9)0.0015 (9)
C2'0.0134 (9)0.0220 (12)0.0165 (10)0.0005 (9)0.0031 (8)−0.0007 (9)
C4'0.0186 (11)0.0249 (13)0.0194 (11)0.0010 (9)0.0035 (9)0.0009 (9)
C6'0.0193 (11)0.0209 (12)0.0194 (10)0.0043 (9)0.0021 (8)0.0000 (9)
C5'0.0206 (10)0.0223 (13)0.0185 (10)0.0032 (9)0.0011 (8)0.0001 (9)
Cl1—C61.723 (2)C3'—C2'1.544 (3)
O1'—C2'1.415 (2)C3'—H3'A0.9900
O1'—H1'0.8400C3'—H3'B0.9900
N3—C41.332 (3)C8—H80.9500
N3—C21.335 (3)C2—H20.9500
N1—C61.325 (3)C2'—C5'1.528 (3)
N1—C21.342 (3)C2'—H2'1.0000
N7—C81.321 (3)C4'—C6'1.520 (3)
N7—C51.388 (3)C4'—C5'1.556 (3)
N9—C81.362 (3)C4'—H4'1.0000
N9—C41.374 (3)C6'—H6'A0.9900
N9—C6'1.469 (3)C6'—H6'B0.9900
C4—C51.393 (3)C5'—H5'A0.9900
C5—C61.388 (3)C5'—H5'B0.9900
C3'—C4'1.539 (3)
C2'—O1'—H1'109.5N3—C2—H2116.0
C4—N3—C2111.81 (19)N1—C2—H2116.0
C6—N1—C2117.32 (17)O1'—C2'—C5'115.42 (17)
C8—N7—C5103.39 (18)O1'—C2'—C3'119.16 (18)
C8—N9—C4106.00 (17)C5'—C2'—C3'88.88 (16)
C8—N9—C6'127.78 (17)O1'—C2'—H2'110.6
C4—N9—C6'126.10 (18)C5'—C2'—H2'110.6
N3—C4—N9127.7 (2)C3'—C2'—H2'110.6
N3—C4—C5126.60 (19)C6'—C4'—C3'118.02 (19)
N9—C4—C5105.69 (18)C6'—C4'—C5'118.75 (18)
C6—C5—N7134.5 (2)C3'—C4'—C5'88.05 (16)
C6—C5—C4114.87 (19)C6'—C4'—H4'110.1
N7—C5—C4110.64 (17)C3'—C4'—H4'110.1
C4'—C3'—C2'86.87 (17)C5'—C4'—H4'110.1
C4'—C3'—H3'A114.2N9—C6'—C4'109.58 (17)
C2'—C3'—H3'A114.2N9—C6'—H6'A109.8
C4'—C3'—H3'B114.2C4'—C6'—H6'A109.8
C2'—C3'—H3'B114.2N9—C6'—H6'B109.8
H3'A—C3'—H3'B111.3C4'—C6'—H6'B109.8
N1—C6—C5121.3 (2)H6'A—C6'—H6'B108.2
N1—C6—Cl1117.18 (15)C2'—C5'—C4'86.82 (16)
C5—C6—Cl1121.52 (16)C2'—C5'—H5'A114.2
N7—C8—N9114.28 (18)C4'—C5'—H5'A114.2
N7—C8—H8122.9C2'—C5'—H5'B114.2
N9—C8—H8122.9C4'—C5'—H5'B114.2
N3—C2—N1128.1 (2)H5'A—C5'—H5'B111.3
D—H···AD—HH···AD···AD—H···A
O1′—H1′···N7i0.842.032.853 (3)168
C8—H8···O1′ii0.952.273.148 (2)153
C2—H2···N3iii0.952.483.311 (3)146
C2′—H2′···Cg1iv0.992.843.628 (2)136
  7 in total

Review 1.  Emerging anti-HIV drugs.

Authors:  Erik De Clercq
Journal:  Expert Opin Emerg Drugs       Date:  2005-05       Impact factor: 4.191

2.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

3.  Inhibition of infectivity of human immunodeficiency virus by oxetanocin.

Authors:  H Hoshino; N Shimizu; N Shimada; T Takita; T Takeuchi
Journal:  J Antibiot (Tokyo)       Date:  1987-07       Impact factor: 2.649

4.  Synthesis and antiviral activity of enantiomeric forms of cyclobutyl nucleoside analogues.

Authors:  G S Bisacchi; A Braitman; C W Cianci; J M Clark; A K Field; M E Hagen; D R Hockstein; M F Malley; T Mitt; W A Slusarchyk
Journal:  J Med Chem       Date:  1991-04       Impact factor: 7.446

5.  Crystal structure refinement with SHELXL.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr C Struct Chem       Date:  2015-01-01       Impact factor: 1.172

6.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

7.  The Cambridge Structural Database.

Authors:  Colin R Groom; Ian J Bruno; Matthew P Lightfoot; Suzanna C Ward
Journal:  Acta Crystallogr B Struct Sci Cryst Eng Mater       Date:  2016-04-01
  7 in total

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