Literature DB >> 31390219

Identification of Hub Genes in Duchenne Muscular Dystrophy: Evidence from Bioinformatic Analysis.

Rupeng Zhang1, Leifeng Lv1, Wenrui Ban1, Xiaoqian Dang1, Chen Zhang1.   

Abstract

The hub genes and signaling pathways associated with Duchenne muscular dystrophy (DMD) were predicted by bioinformatic methods to improve the therapeutic effect and quality of life of patients. Microarray data sets GSE465, GSE1004, and GSE1007 were downloaded from the Gene Expression Omnibus (GEO) database. The differentially expressed genes (DEGs) were identified by GEO2R, and function enrichment analyses were performed by DAVID. The protein-protein interaction (PPI) network was constructed and the module analysis was performed using STRING and Cytoscape. A total of 195 DEGs were identified. The enriched functions and pathways of the DEGs include extracellular exosome, focal adhesion, extracellular matrix (ECM), focal adhesion, PI3K-Akt signaling pathway, calcium signaling pathway, and ECM-receptor interaction. Fifteen hub genes were identified. DEGs and hub genes identified in the present study help us understand the molecular mechanisms underlying the pathogenesis and progression of DMD, and provide candidate targets for treatment of DMD.

Entities:  

Keywords:  Duchenne muscular dystrophy; bioinformatic analysis; differentially expressed genes; hub genes; signaling pathway

Mesh:

Substances:

Year:  2019        PMID: 31390219     DOI: 10.1089/cmb.2019.0167

Source DB:  PubMed          Journal:  J Comput Biol        ISSN: 1066-5277            Impact factor:   1.479


  2 in total

Review 1.  Application of Droplet Digital PCR Technology in Muscular Dystrophies Research.

Authors:  Ioana Lambrescu; Alexandra Popa; Emilia Manole; Laura Cristina Ceafalan; Gisela Gaina
Journal:  Int J Mol Sci       Date:  2022-04-27       Impact factor: 6.208

2.  Assessment of Weighted Gene Co-Expression Network Analysis to Explore Key Pathways and Novel Biomarkers in Muscular Dystrophy.

Authors:  Xiaoxue Xu; Yuehan Hao; Jiao Wu; Jing Zhao; Shuang Xiong
Journal:  Pharmgenomics Pers Med       Date:  2021-04-13
  2 in total

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