Literature DB >> 31385134

Alternative Splicing of ALS Genes: Misregulation and Potential Therapies.

Benedetta Perrone1, Valentina La Cognata2, Teresa Sprovieri1, Carmine Ungaro1, Francesca Luisa Conforti3, Sebastiano Andò3,4, Sebastiano Cavallaro5.   

Abstract

Neurodegenerative disorders such as amyotrophic lateral sclerosis (ALS), spinal muscular atrophy (SMA), Parkinson's, Alzheimer's, and Huntington's disease affect a rapidly increasing population worldwide. Although common pathogenic mechanisms have been identified (e.g., protein aggregation or dysfunction, immune response alteration and axonal degeneration), the molecular events underlying timing, dosage, expression, and location of RNA molecules are still not fully elucidated. In particular, the alternative splicing (AS) mechanism is a crucial player in RNA processing and represents a fundamental determinant for brain development, as well as for the physiological functions of neuronal circuits. Although in recent years our knowledge of AS events has increased substantially, deciphering the molecular interconnections between splicing and ALS remains a complex task and still requires considerable efforts. In the present review, we will summarize the current scientific evidence outlining the involvement of AS in the pathogenic processes of ALS. We will also focus on recent insights concerning the tuning of splicing mechanisms by epigenomic and epi-transcriptomic regulation, providing an overview of the available genomic technologies to investigate AS drivers on a genome-wide scale, even at a single-cell level resolution. In the future, gene therapy strategies and RNA-based technologies may be utilized to intercept or modulate the splicing mechanism and produce beneficial effects against ALS.

Entities:  

Keywords:  ALS genes; Alternative splicing (AS); Amyotrophic lateral sclerosis (ALS); RNA-binding protein (RBP); Splicing factors; Splicing machinery

Year:  2019        PMID: 31385134     DOI: 10.1007/s10571-019-00717-0

Source DB:  PubMed          Journal:  Cell Mol Neurobiol        ISSN: 0272-4340            Impact factor:   5.046


  139 in total

1.  CHCHD10 mutations p.R15L and p.G66V cause motoneuron disease by haploinsufficiency.

Authors:  Sarah J Brockmann; Axel Freischmidt; Patrick Oeckl; Kathrin Müller; Srinivas K Ponna; Anika M Helferich; Christoph Paone; Jörg Reinders; Kerstin Kojer; Michael Orth; Manu Jokela; Mari Auranen; Bjarne Udd; Andreas Hermann; Karin M Danzer; Peter Lichtner; Paul Walther; Albert C Ludolph; Peter M Andersen; Markus Otto; Petri Kursula; Steffen Just; Jochen H Weishaupt
Journal:  Hum Mol Genet       Date:  2018-02-15       Impact factor: 6.150

2.  Evidence that C9ORF72 Dipeptide Repeat Proteins Associate with U2 snRNP to Cause Mis-splicing in ALS/FTD Patients.

Authors:  Shanye Yin; Rodrigo Lopez-Gonzalez; Ryan C Kunz; Jaya Gangopadhyay; Carl Borufka; Steven P Gygi; Fen-Biao Gao; Robin Reed
Journal:  Cell Rep       Date:  2017-06-13       Impact factor: 9.423

3.  ANG mutations segregate with familial and 'sporadic' amyotrophic lateral sclerosis.

Authors:  Matthew J Greenway; Peter M Andersen; Carsten Russ; Sean Ennis; Susan Cashman; Colette Donaghy; Victor Patterson; Robert Swingler; Dairin Kieran; Jochen Prehn; Karen E Morrison; Andrew Green; K Ravi Acharya; Robert H Brown; Orla Hardiman
Journal:  Nat Genet       Date:  2006-02-26       Impact factor: 38.330

4.  Profound downregulation of the RNA editing enzyme ADAR2 in ALS spinal motor neurons.

Authors:  Takuto Hideyama; Takenari Yamashita; Hitoshi Aizawa; Shoji Tsuji; Akiyoshi Kakita; Hitoshi Takahashi; Shin Kwak
Journal:  Neurobiol Dis       Date:  2011-12-28       Impact factor: 5.996

5.  TARDBP mutations in individuals with sporadic and familial amyotrophic lateral sclerosis.

Authors:  Edor Kabashi; Paul N Valdmanis; Patrick Dion; Dan Spiegelman; Brendan J McConkey; Christine Vande Velde; Jean-Pierre Bouchard; Lucette Lacomblez; Ksenia Pochigaeva; Francois Salachas; Pierre-Francois Pradat; William Camu; Vincent Meininger; Nicolas Dupre; Guy A Rouleau
Journal:  Nat Genet       Date:  2008-03-30       Impact factor: 38.330

6.  Dynactin Deficiency in the CNS of Humans with Sporadic ALS and Mice with Genetically Determined Motor Neuron Degeneration.

Authors:  Magdalena Kuźma-Kozakiewicz; Agnieszka Chudy; Beata Kaźmierczak; Dorota Dziewulska; Ewa Usarek; Anna Barańczyk-Kuźma
Journal:  Neurochem Res       Date:  2013-09-28       Impact factor: 3.996

7.  Optimization of trans-Splicing for Huntington's Disease RNA Therapy.

Authors:  Hansjörg Rindt; Colton M Tom; Christian L Lorson; Virginia B Mattis
Journal:  Front Neurosci       Date:  2017-10-10       Impact factor: 4.677

8.  Intron retention and nuclear loss of SFPQ are molecular hallmarks of ALS.

Authors:  Raphaelle Luisier; Giulia E Tyzack; Claire E Hall; Jamie S Mitchell; Helen Devine; Doaa M Taha; Bilal Malik; Ione Meyer; Linda Greensmith; Jia Newcombe; Jernej Ule; Nicholas M Luscombe; Rickie Patani
Journal:  Nat Commun       Date:  2018-05-22       Impact factor: 14.919

9.  RNA editing in nascent RNA affects pre-mRNA splicing.

Authors:  Yun-Hua Esther Hsiao; Jae Hoon Bahn; Yun Yang; Xianzhi Lin; Stephen Tran; Ei-Wen Yang; Giovanni Quinones-Valdez; Xinshu Xiao
Journal:  Genome Res       Date:  2018-05-03       Impact factor: 9.043

10.  Unexpected similarities between C9ORF72 and sporadic forms of ALS/FTD suggest a common disease mechanism.

Authors:  Erin G Conlon; Delphine Fagegaltier; Phaedra Agius; Julia Davis-Porada; James Gregory; Isabel Hubbard; Kristy Kang; Duyang Kim; Hemali Phatnani; Justin Kwan; Dhruv Sareen; James R Broach; Zachary Simmons; Ximena Arcila-Londono; Edward B Lee; Vivianna M Van Deerlin; Neil A Shneider; Ernest Fraenkel; Lyle W Ostrow; Frank Baas; Noah Zaitlen; James D Berry; Andrea Malaspina; Pietro Fratta; Gregory A Cox; Leslie M Thompson; Steve Finkbeiner; Efthimios Dardiotis; Timothy M Miller; Siddharthan Chandran; Suvankar Pal; Eran Hornstein; Daniel J MacGowan; Terry Heiman-Patterson; Molly G Hammell; Nikolaos A Patsopoulos; Joshua Dubnau; Avindra Nath; Hemali Phatnani; Neil A Shneider; James L Manley
Journal:  Elife       Date:  2018-07-13       Impact factor: 8.140

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  9 in total

Review 1.  Alternative Splicing and Hypoxia Puzzle in Alzheimer's and Parkinson's Diseases.

Authors:  Eglė Jakubauskienė; Arvydas Kanopka
Journal:  Genes (Basel)       Date:  2021-08-20       Impact factor: 4.096

2.  A C-Terminally Truncated TDP-43 Splice Isoform Exhibits Neuronal Specific Cytoplasmic Aggregation and Contributes to TDP-43 Pathology in ALS.

Authors:  Marc Shenouda; Shangxi Xiao; Laura MacNair; Agnes Lau; Janice Robertson
Journal:  Front Neurosci       Date:  2022-06-21       Impact factor: 5.152

Review 3.  Neurodegenerative diseases: a hotbed for splicing defects and the potential therapies.

Authors:  Dunhui Li; Craig Stewart McIntosh; Frank Louis Mastaglia; Steve Donald Wilton; May Thandar Aung-Htut
Journal:  Transl Neurodegener       Date:  2021-05-20       Impact factor: 8.014

4.  Isoform-specific NF1 mRNA levels correlate with disease severity in Neurofibromatosis type 1.

Authors:  Antonia Assunto; Ursula Ferrara; Alessandro De Luca; Claudia Pivonello; Lisa Lombardo; Annapina Piscitelli; Cristina Tortora; Valentina Pinna; Paola Daniele; Rosario Pivonello; Maria Giovanna Russo; Giuseppe Limongelli; Annamaria Colao; Marco Tartaglia; Pietro Strisciuglio; Daniela Melis
Journal:  Orphanet J Rare Dis       Date:  2019-11-15       Impact factor: 4.123

5.  Splicing Players Are Differently Expressed in Sporadic Amyotrophic Lateral Sclerosis Molecular Clusters and Brain Regions.

Authors:  Valentina La Cognata; Giulia Gentile; Eleonora Aronica; Sebastiano Cavallaro
Journal:  Cells       Date:  2020-01-08       Impact factor: 6.600

Review 6.  RNA Modifications and RNA Metabolism in Neurological Disease Pathogenesis.

Authors:  Biswanath Chatterjee; Che-Kun James Shen; Pritha Majumder
Journal:  Int J Mol Sci       Date:  2021-11-01       Impact factor: 5.923

7.  Distant coupling between RNA editing and alternative splicing of the osmosensitive cation channel Tmem63b.

Authors:  Dan Wu; Yan-Yu Zang; Yong-Yun Shi; Chang Ye; Wen-Min Cai; Xiao-Hui Tang; Liyun Zhao; Yong Liu; Zhenji Gan; Gui-Quan Chen; Yun Xu; Jian-Jun Yang; Yun Stone Shi
Journal:  J Biol Chem       Date:  2020-10-25       Impact factor: 5.157

Review 8.  Amyotrophic Lateral Sclerosis: Molecular Mechanisms, Biomarkers, and Therapeutic Strategies.

Authors:  Xiaoming Yang; Yanan Ji; Wei Wang; Lilei Zhang; Zehao Chen; Miaomei Yu; Yuntian Shen; Fei Ding; Xiaosong Gu; Hualin Sun
Journal:  Antioxidants (Basel)       Date:  2021-06-24

Review 9.  Alternative Splicing Role in New Therapies of Spinal Muscular Atrophy.

Authors:  Jan Lejman; Grzegorz Zieliński; Piotr Gawda; Monika Lejman
Journal:  Genes (Basel)       Date:  2021-08-28       Impact factor: 4.096

  9 in total

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