| Literature DB >> 31384831 |
Jenny Jeehan Nasr1, Azza H Rageh2, Heba Elmansi1, Mohamed I El-Awady1, Ghada S Hassan3, Hatem A Abdel-Aziz4, Fathalla Belal1.
Abstract
BACKGROUND: Lipophilicity is a physicochemical property of an essential importance in medicinal chemistry; therefore, fast and reliable measurement of lipophilicity will affect greatly the drug discovery process.Entities:
Keywords: Celecoxib analogues; HPLC; Lipophilicity chromatographic index; Lipophilicity estimation; log kw
Year: 2019 PMID: 31384831 PMCID: PMC6661952 DOI: 10.1186/s13065-019-0607-6
Source DB: PubMed Journal: BMC Chem ISSN: 2661-801X
Fig. 1Chemical structures of the studied compounds
Logarithm of the retention factor (log k) on C18 column using methanol–water system (60–80% are percentages of methanol in the mobile phase)
| Compound | Log | ||||
|---|---|---|---|---|---|
| 60% | 65% | 70% | 75% | 80% | |
|
| 0.088 | 0.041 | − 0.206 | − 0.412 | − 0.695 |
|
| 0.317 | 0.493 | − 0.016 | − 0.235 | − 0.607 |
|
| 0.635 | 0.501 | 0.123 | − 0.036 | − 0.145 |
|
| a | 0.901 | 0.364 | 0.123 | − 0.041 |
|
| 0.130 | 0.053 | − 0.220 | − 0.424 | − 0.385 |
|
| 0.481 | 0.280 | 0.150 | − 0.233 | − 0.198 |
|
| 0.950 | 0.824 | 0.740 | − 0.12 | − 0.051 |
|
| 0.847 | 0.743 | 0.611 | − 0.221 | − 0.410 |
| Celecoxib | a | 0.950 | 0.83 | 0.530 | 0.235 |
aCompound retained on the stationary phase
Linear regression parameters between the logarithm of the retention factor (log k) and methanol volume fraction (φ)
| Compound | log k = log kw − S | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| Log kw | SDa | S | SDb |
| R2 | Syx | F |
| Range | |
|
| 2.593 | ± 0.331 | − 0.040 | ± 0.005 | 0.9804 | 0.9610 | 0.074 | 74.10 | 64.83 | 60–80 |
|
| 3.597 | ± 0.826 | − 0.052 | ± 0.012 | 0.9301 | 0.8650 | 0.186 | 19.25 | 69.81 | 60–80 |
|
| 3.151 | ± 0.359 | − 0.042 | ± 0.005 | 0.9785 | 0.9570 | 0.081 | 67.59 | 75.14 | 60–80 |
|
| 4.784 | ± 0.887 | − 0.061 | ± 0.012 | 0.9627 | 0.9270 | 0.136 | 25.30 | 77.99 | 65–80 |
|
| 1.941 | ± 0.413 | − 0.030 | ± 0.006 | 0.9475 | 0.8980 | 0.092 | 26.34 | 64.39 | 60–80 |
|
| 2.715 | ± 0.442 | − 0.037 | ± 0.006 | 0.9602 | 0.9220 | 0.099 | 35.47 | 72.57 | 60–80 |
|
| 4.590 | ± 1.091 | − 0.059 | ± 0.015 | 0.9098 | 0.8280 | 0.245 | 14.41 | 77.97 | 60–80 |
|
| 5.182 | ± 1.017 | − 0.069 | ± 0.014 | 0.9409 | 0.8850 | 0.229 | 23.14 | 74.52 | 60–80 |
| Celecoxib | 4.180 | ± 0.445 | − 0.048 | ± 0.006 | 0.9847 | 0.9696 | 0.068 | 63.81 | 85.51 | 65–80 |
SDa, standard deviation of intercept; SDb, standard deviation of slope, r, correlation coefficient, R2, determination coefficient, Syx, standard error of estimate (SEE); F, value of test F Snedecora at P value < 0.05; 0, the hydrophobicity index
Fig. 2Linear fitting parameters of the relationship between log k and volume faction of methanol for nine of the studied compounds
Correlation between experimental log kw values or 0 values and computed log P values (calculated using different techniques)
| Compound | log kw |
| miLogPa | ALOGPSb | ACD/Labsc | APLOGPc |
|---|---|---|---|---|---|---|
|
| 2.59 | 64.83 | 1.96 | 2.20 | 2.28 | 2.07 |
|
| 3.60 | 69.81 | 2.40 | 2.60 | 2.74 | 2.57 |
|
| 3.15 | 75.14 | 2.76 | 3.05 | 3.04 | 2.92 |
|
| 4.78 | 77.99 | 3.21 | 3.38 | 3.5 | 3.33 |
|
| 1.94 | 64.39 | 2.02 | 1.86 | 2.42 | 2.62 |
|
| 2.72 | 72.57 | 2.47 | 1.86 | 2.88 | 2.86 |
|
| 4.59 | 77.97 | 5.33 | 4.37 | 4.12 | 3.83 |
|
| 5.18 | 74.52 | 5.78 | 4.60 | 4.58 | 4.09 |
| Celecoxib | 4.18 | 85.51 | 3.61 | 3.99 | 4.61 | 3.92 |
| r between log kw values and computed log P valuesd | 0.8397 | 0.9107 | 0.8501 | 0.8283 | ||
| r between | 0.5548 | 0.7263 | 0.8414 | 0.8143 | ||
Correlation between experimental log kw values or 0 values and computed log P values (calculated using different techniques)
aCalculated using molinspiration online service (http://www.molinspiration.com/)
bCalculated using ALOGPS 2.1 online service (http://www.vcclab.org/lab/alogps/)
cCalculated using ACD/Labs online service (https://ilab.acdlabs.com/iLab2/)
dCorrelation coefficient
Purity of the studied compounds
| Compound number | Puritya |
|---|---|
|
| 97.03 |
|
| 98.25 |
|
| 94.27 |
|
| 96.84 |
|
| 99.50 |
|
| 98.10 |
|
| 98.80 |
|
| 99.70 |
aThe purity of the target compounds was confirmed by H1NMR using Bruker NMR spectrometer and DMSO as solvent. Charts describing compounds 16 a,b and 17 a,b were included to confirm the purity of the mentioned compounds. HPLC run was also performed to check and evaluate such purity as well
Fig. 3Scores and loadings of Principal Component Analysis of the lipophilicity matrix