| Literature DB >> 31380074 |
Peter A Henrys1, Susan G Jarvis1.
Abstract
The availability of suitable habitat is a key predictor of the changing status of biodiversity. Quantifying habitat availability over large spatial scales is, however, challenging. Although remote sensing techniques have high spatial coverage, there is uncertainty associated with these estimates due to errors in classification. Alternatively, the extent of habitats can be estimated from ground-based field survey. Financial and logistical constraints mean that on-the-ground surveys have much lower coverage, but they can produce much higher quality estimates of habitat extent in the areas that are surveyed. Here, we demonstrate a new combined model which uses both types of data to produce unified national estimates of the extent of four key habitats across Great Britain based on Countryside Survey and Land Cover Map. This approach considers that the true proportion of habitat per km2 (Zi ) is unobserved, but both ground survey and remote sensing can be used to estimate Zi . The model allows the relationship between remote sensing data and Zi to be spatially biased while ground survey is assumed to be unbiased. Taking a statistical model-based approach to integrating field survey and remote sensing data allows for information on bias and precision to be captured and propagated such that estimates produced and parameters estimated are robust and interpretable. A simulation study shows that the combined model should perform best when error in the ground survey data is low. We use repeat surveys to parameterize the variance of ground survey data and demonstrate that error in this data source is small. The model produced revised national estimates of broadleaved woodland, arable land, bog, and fen, marsh and swamp extent across Britain in 2007.Entities:
Keywords: Bayesian model calibration; Great Britain; data integration; field survey; peatland; remote sensing
Year: 2019 PMID: 31380074 PMCID: PMC6662320 DOI: 10.1002/ece3.5376
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1Locations of 1 km × 1 km CS squares surveyed in 2007
Reported estimates of total habitat area (in 000s ha) from the Countryside Survey (CS) and Land Cover Map (LCM)
| Broad habitat | CS | LCM |
|---|---|---|
| Broadleaved, Mixed and Yew Woodland | 1,406 | 1,319 |
| Coniferous Woodland | 1,319 | 1,440 |
| Arable and Horticulture | 4,608 | 6,219 |
| Improved Grassland | 4,494 | 5,528 |
| Neutral Grassland | 2,176 | 1,414 |
| Calcareous Grassland | 57 | 37 |
| Dwarf Shrub Heath | 1,343 | 2,039 |
| Fen, Marsh, and Swamp | 392 | 10 |
| Bog | 2,232 | 1,005 |
Parameter estimates from joint models fitted to broadleaved woodland, bog, arable and fen, marsh, and swamp
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| Broadleaved woodland | ||||||||
| 50% | −0.340 | 0.475 | 5.34E−07 | 3.18E−07 | 2.40E−07 | 3.86E−07 | 3.04 | 17.54 |
| 2.50% | −1.150 | 0.383 | −1.03E−06 | −6.64E−07 | 6.80E−08 | 2.23E−07 | 3.94 | 19.61 |
| 97.50% | 0.435 | 0.571 | 2.25E−06 | 8.88E−07 | 4.04E−07 | 4.81E−07 | 2.48 | 15.63 |
| Bog | ||||||||
| 50% | 1.019 | 1.242 | −5.23E−06 | 3.42E−06 | −3.63E−06 | −1.28E−07 | 3.56 | 111.11 |
| 2.50% | 0.213 | 0.070 | −7.45E−06 | 2.05E−06 | −4.26E−06 | −6.24E−07 | 4.00 | 142.86 |
| 97.50% | 1.863 | 1.642 | −3.50E−06 | 4.78E−06 | −1.10E−07 | 4.14E−07 | 2.70 | 41.67 |
| Arable | ||||||||
| 50% | −0.424 | 0.467 | 7.67E−07 | 4.43E−07 | 7.61E−07 | 2.22E−07 | 2.65 | 90.91 |
| 2.50% | −1.552 | 0.412 | −3.35E−06 | −1.30E−06 | 6.97E−07 | 1.42E−07 | 3.83 | 100.00 |
| 97.50% | 1.466 | 0.515 | 3.25E−06 | 1.56E−06 | 8.87E−07 | 2.66E−07 | 1.87 | 76.92 |
| Fen, marsh, and swamp | ||||||||
| 50% | 0.616 | −0.338 | −1.29E−06 | −2.13E−08 | 2.25E−06 | −7.02E−07 | 10.20 | 0.01 |
| 2.50% | 0.366 | −0.552 | −1.87E−06 | −3.68E−07 | 1.55E−06 | −1.53E−06 | 11.36 | 0.03 |
| 97.50% | 0.847 | −0.084 | −1.06E−06 | 2.41E−07 | 3.11E−06 | 6.34E−07 | 9.17 | 0.01 |
Shown are the 50th percentile and 2.5th and 97.5th percentiles from the taken from the posterior distributions for each parameter.
Estimated total area of each broad habitat across Britain (in 000s ha) together with differences from previously reported estimates from CS and LCM as shown in Table 1 and the R 2 value of the relationship between the CS square values and corresponding LCM values
| Habitat | Total Est (000s ha) | Difference from CS estimate | Difference from LCM estimate |
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|---|---|---|---|---|
| Broadleaved woodland | 1,176 | −230 | −143 | 0.475 |
| Bog | 1,025 | −1,207 | 20 | 0.143 |
| Arable | 5,408 | 800 | −811 | 0.857 |
| Fen, marsh, and swamp | 193 | −199 | 183 | 0.000 |
Figure 2Results from simulation study showing the observed versus estimated total area for the 1,000 simulated datasets. Left‐hand plot shows simulation when the field survey error is low and the right‐hand plots when the error is large. Black represents estimates form combined model, blue from LCM‐type census coverage, and red from extrapolated field survey
Root‐mean‐square error values for the different approaches to estimating habitat coverage compared to the known true coverage
| Standard deviation of ground survey proportions | Combined model | Remote sensing census only | Ground survey only |
|---|---|---|---|
| Uniform(0, 0.02) | 82.50 | 183.59 | 137.97 |
| Uniform(0, 0.2) | 447.02 | 191.66 | 258.11 |
This is shown for when the variation in the ground survey data is low (top row) and high (bottom line).