Literature DB >> 31378274

Droplet digital PCR applications in the tuberculosis world.

Raphael Nyaruaba1, Caroline Mwaliko2, Kelvin Kimutai Kering3, Hongping Wei4.   

Abstract

Droplet digital polymerase chain reaction (ddPCR) is a third generation of polymerase chain reaction (PCR) that enables the exact quantification of nucleic acid targets within a sample. The capability of ddPCR to accurately detect and quantify low abundant targets has led to its fast-growing applications in detection of different pathogens. This review summarizes the ddPCR technology and its applications in tuberculosis diagnosis. From current studies including a total of 9 publications on the applications of ddPCR in tuberculosis research, it is clear that ddPCR technology offers enormous advantages, such as unparalleled sensitivity, high precision, and absolute quantification without a standard curve, over common molecular diagnostic platforms like the real-time quantification PCR. The latest study also showed that rapid drug susceptibility test of Mycobacterium tuberculosis in sputa could be achieved within 4 days. However, the high cost is the main limitation for its wide applications, especially in developing countries. As we near the vision 2030 goal for sustainable development and ending the tuberculosis epidemic by 2030, ddPCR techniques may help achieve this objective and many more discussed in the UNGA-HLM-TB.
Copyright © 2019 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Digital PCR; Droplet digital PCR; Quantification; Quantitative PCR; Tuberculosis

Mesh:

Substances:

Year:  2019        PMID: 31378274     DOI: 10.1016/j.tube.2019.07.001

Source DB:  PubMed          Journal:  Tuberculosis (Edinb)        ISSN: 1472-9792            Impact factor:   3.131


  17 in total

1.  Comparison of qPCR with ddPCR for the Quantification of JC Polyomavirus in CSF from Patients with Progressive Multifocal Leukoencephalopathy.

Authors:  Nyater Ngouth; Maria Chiara Monaco; Lorenzo Walker; Sydney Corey; Ijeoma Ikpeama; Gary Fahle; Irene Cortese; Sanchita Das; Steven Jacobson
Journal:  Viruses       Date:  2022-06-08       Impact factor: 5.818

2.  Ocular cytomegalovirus latency exacerbates the development of choroidal neovascularization.

Authors:  Jinxian Xu; Xinglou Liu; Xinyan Zhang; Brendan Marshall; Zheng Dong; Yutao Liu; Diego G Espinosa-Heidmann; Ming Zhang
Journal:  J Pathol       Date:  2020-05-21       Impact factor: 7.996

3.  Simultaneous isolation and enumeration of virulent Vibrio cholerae and Vibrio vulnificus using an advanced MPN-PCR method.

Authors:  Jae-Hwa Lee; Seul-Ki Park; Fazlurrahman Khan; Du-Min Jo; Do-Ha Lee; Min-Gyun Kang; Young-Mog Kim
Journal:  Arch Microbiol       Date:  2021-12-06       Impact factor: 2.552

4.  Long-Distance Phasing of a Tentative "Enhancer" Single-Nucleotide Polymorphism With CYP2D6 Star Allele Definitions.

Authors:  Erin C Boone; Wendy Y Wang; Roger Gaedigk; Mariana Cherner; Anick Bérard; J Steven Leeder; Neil A Miller; Andrea Gaedigk
Journal:  Front Pharmacol       Date:  2020-05-08       Impact factor: 5.810

5.  Fabrication of a T-Shaped Microfluidic Channel Using a Consumer Laser Cutter and Application to Monodisperse Microdroplet Formation.

Authors:  Naoki Sasaki; Eisuke Sugenami
Journal:  Micromachines (Basel)       Date:  2021-02-05       Impact factor: 2.891

6.  Developing multiplex ddPCR assays for SARS-CoV-2 detection based on probe mix and amplitude based multiplexing.

Authors:  Raphael Nyaruaba; Changchang Li; Caroline Mwaliko; Matilu Mwau; Nelson Odiwuor; Elishiba Muturi; Caroline Muema; Jin Xiong; Junhua Li; Junping Yu; Hongping Wei
Journal:  Expert Rev Mol Diagn       Date:  2020-12-30       Impact factor: 5.225

7.  Development and Preliminary Application of Multiplex Loop-Mediated Isothermal Amplification Coupled With Lateral Flow Biosensor for Detection of Mycobacterium tuberculosis Complex.

Authors:  Xingyun Wang; Guirong Wang; Yacui Wang; Shuting Quan; Hui Qi; Lin Sun; Chen Shen; Hairong Huang; Weiwei Jiao; Adong Shen
Journal:  Front Cell Infect Microbiol       Date:  2021-04-27       Impact factor: 5.293

8.  The Potential of Digital Polymerase Chain Reaction for Improving Diagnostic Yield of Nontuberculous Mycobacteria Pulmonary Disease.

Authors:  Yoichi Nishii; Kazuki Furuhashi; Saki Nakamura; Miho Nishio; Yuki Nakamura; Kengo Ushiro; Kentaro Ito; Tadashi Sakaguchi; Yuta Suzuki; Kentaro Fujiwara; Taro Yasuma; Tetsu Kobayashi; Corina D'Alessandro-Gabazza; Esteban C Gabazza; Osamu Taguchi; Osamu Hataji
Journal:  Infect Drug Resist       Date:  2021-12-01       Impact factor: 4.003

9.  Development and Evaluation of a Single Dye Duplex Droplet Digital PCR Assay for the Rapid Detection and Quantification of Mycobacterium tuberculosis.

Authors:  Raphael Nyaruaba; Jin Xiong; Caroline Mwaliko; Nuo Wang; Belindah J Kibii; Junping Yu; Hongping Wei
Journal:  Microorganisms       Date:  2020-05-10

Review 10.  DNA Transformations for Diagnosis and Therapy.

Authors:  So Yeon Ahn; Jin Liu; Srivithya Vellampatti; Yuzhou Wu; Soong Ho Um
Journal:  Adv Funct Mater       Date:  2020-12-27       Impact factor: 19.924

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.