| Literature DB >> 31373933 |
Ashok S Raj1,2,3, Erin R Shanahan1,2,4, Cuong D Tran5,6, Purnima Bhat7, Linda M Fletcher1,2, David A Vesey2, Mark Morrison4, Gerald Holtmann1,2, Graeme A Macdonald1,2.
Abstract
OBJECTIVES: Chronic liver disease (CLD) is associated with both alterations of the stool microbiota and increased small intestinal permeability. However, little is known about the role of the small intestinal mucosa-associated microbiota (MAM) in CLD. The aim of this study was to evaluate the relationship between the duodenal MAM and both small intestinal permeability and liver disease severity in CLD.Entities:
Year: 2019 PMID: 31373933 PMCID: PMC6736223 DOI: 10.14309/ctg.0000000000000068
Source DB: PubMed Journal: Clin Transl Gastroenterol ISSN: 2155-384X Impact factor: 4.488
Characteristics of CLD and control subjects
Figure 1.Multivariate analyses and diversity of microbial community composition. (a) sPLS-DA showing the effect size of OTUs contributing to the differences between CLD and controls. (b) LEfSe plot showing LDA scores for OTUs that differentiated CLD from controls. (c) Alpha diversity in CLD MAM compared to controls. Plot shows median Shannon index and IQR, *P < 0.01, Mann Whitney U test. CLD, chronic liver disease; expl. var, explained variance; LDA, linear discriminant analysis; LEfSe, linear discriminant analysis effect size; MAM, mucosa-associated microbiota; OTU, operational taxonomic unit; PCoA, principal coordinate analysis; sPLS-DA, sparse partial least squares discriminant analysis.
Figure 2.Abundance of microbial taxa in CLD and control subjects at the phylum (a) and genus (b) level. Box plots represent median (IQR) relative abundance. *P < 0.05 and FDRq < 0.1 on DESeq2. **P < 0.01 and FDRq < 0.05 on DESeq2. #Significantly different on ANCOM. ANCOM, analysis of composition of microbiomes; CLD, chronic liver disease; DESeq2, Differential gene expression analysis based on the negative binomial distribution; FDRq, False discovery rate q value; IQR, interquartile range.
Figure 3.Correlations between microbial diversity with small intestinal permeability and serum ALT in CLD subjects. (a) Alpha diversity and small intestinal permeability, Spearman r = −0.41, P = 0.02. (b) Alpha diversity and serum ALT, Spearman r = −0.35, P = 0.04. ALT, alanine aminotransferase; CLD, chronic liver disease; L:R, lactulose: rhamnose ratio; SI, small intestine.