| Literature DB >> 31372534 |
Thor-Henrik Henriksen1,2,3, Workeabeba Abebe4, Wondwossen Amogne1, Yitagesu Getachew2, Harald Weedon-Fekjær5, Jörn Klein6, Yimtubezinash Woldeamanuel7.
Abstract
BACKGROUND: WHO has named three groups of gram-negative bacteria "our critical antimicrobial resistance-related problems globally". It is thus a priority to unveil any important covariation of variables behind this three-headed epidemic, which has gained alarming proportions in Low Income Countries, and spreads rapidly. Environmental bacteria including Acinetobacter spp. are common nosocomial pathogens in institutions that have high rates of antimicrobial resistance among other groups of gram-negative bacteria.Entities:
Keywords: Acinetobacter spp.; Africa; Antibiotic resistance; Antimicrobial resistance; Antimicrobial resistance vulnerability; Enterobacteriaceae; Europe; Extended spectrum beta-lactamase; Global health; Gram-negative bacteria; Infectious disease
Year: 2019 PMID: 31372534 PMCID: PMC6658825 DOI: 10.1016/j.heliyon.2019.e02054
Source DB: PubMed Journal: Heliyon ISSN: 2405-8440
Fig. 1Selection process.
Crucial data and outcome of quality check.
| Ref | First Author | Country | Institution | Patients' cohorts | Sampling year | Pending issue, and outcome of quality check. | Metho-dology | GNB (no) | Entero-bacteriaceae (no) | Resistance rate Entero-bateriaceae | Proportion of Acinetobacter (%) | Quality |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Maina | Kenya | Aga Khan Gen.Hospital Nairobi | NICU, Paediatric, Medical, Surgical | 2010-14 | Susceptibility test results given for HAI and CAI combined, 70% being CAI. | CLSI | 189 | 152 | NG | 11 | - | |
| Morkel | South Africa | Tygerberg Childrens Hospital Cape Town | Children including neonates | 2008 | 15% of specimen harvested < 48 h after admission or birth. | CLSI | 38 | 23 | 53 | 37 | + | |
| Dramowski | South Africa | Tygerberg Childrens Hospital Cape Town | Neonates | 2009-13 | Susceptibility of Enterobacteriaceae concerns | CLSI | 519 | 426 | 49 | 13 | + | |
| McKay | South Africa | Groote Schuur Hospital, Cape Town | Adult patients | 2011-12 | CLSI | 366 | 214 | 40 | 24 | + | ||
| Zorgani | Libya | Burn and Plastic Surgery Centre | Burn cases | 2000 - 2007 | Missing susceptibility test results. (Author’s answer). | NG | 170 | 57 | NG | 6 | - | |
| Saied | Egypt | Multicentre | 3 univ hosp | 2006-7 | No. of | CLSI | 386 | 267 | 66 | NG | - | |
| See | Egypt | Multicentre | 46 egyptian ICUs, all ages(incl 8 NICUs) | 2011-12 | Only 88/362 isolates (24%) sent for susceptibility test. | CLSI | 51 | 29 | NG | 13 | - | |
| Talaat | Egypt | Incl. 91 ICUs, 28 Hospitals in Egypt. | NICU, Paediatric, Medical, Surgical, Neurological | 2012-14 | Microbes and susceptibility results given for all types of samples/specimen in one. | CLSI | NG | NG | NG | NG | - | |
| Lachhab | Morocco | Mohammed V Military Teaching Hospital | ICU | 2012 - 13 | NG | 45 | 25 | 57 | 29 | + | ||
| Mitt | Estonia | PICU, Tartu University Hospital | PICU | 2004-8 | CLSI | 47 | 39 | 23 | 11 | + | ||
| Horcajada | Spain | 8 Spanish ICUs | Unselected sepsis patients | 2010-11 | Author’s clarification about number of Acintobacter isolates. | CLSI | 371 | 339 | 13 | 1 | + | |
| Bartoletti | Italy | Orsola-Malpighi Hospital Bologna, Italy | 8874 patients with cirrhosis | 2008-12 | Missing test results provided by author. | CLSI / EUCAST | 104 | 77 | 39 | 10 | + | |
| Softic | Bosnia-Herzegovina | University Clinical Centre Tuzla | NICU | 2012 - 13 | CLSI | 32 | 19 | 58 | 19 | + | ||
| Reunes | Belgium | Ghent University Hospital | Geriatric patients | 1992-2007 | NCCLS | 76 | 61 | 5 | 3 | + | ||
| De Bus | Belgium | Ghent University Hospital | Unselected HAI cohort | 2009 - 11 | Susceptibility results given as mean for all GNB, but 86% of GNB are Enterobacteriaceae. | NG | 565 | 487 | 17 | 1 | + | |
| Tabah | Europe | 162 intensive care units (ICUs) in 24 countries. | Unselected HAI cohorts | 2009 | NG | 759 | 342 | 56 | 21 | + | ||
| Perez Lopez | UK | St. George’s Hospital NHS Trust, | Pediatric/NICU | 2001-9 | Only 33% of all Enterobacteriaceae tested for suceptibility. | BSAC | 108 | 78 | NG | 6 | - | |
| Melzer | UK | Royal London Hospital, Barts Health NHS Trust, | UTI associated bacteremia | 2007-8 | Report of 6 ESBL positives in subset of 83 isolates - number of tested isolates not given. | BSAC | 71 | 62 | NG | 0 | - | |
| Åttman | Finland | Tampere University Hospital | Haematho-logical malignancies | 1999-2001 and 2005-07 | Study population is part of other included study. | CLSI / EUCAST | 171 | 115 | 6 | 0 | - | |
| Huttunen | Finland | Tampere University Hospital | Unselected HAI cohort | 1999-2001 and 2005-07 | Acinetobacter-rate not given, but no. of non-Pseudomonas non-Enterobacteriaceae GNB was 11, i.e. 2,0% of GNB. Proportion of Acinetobacter defined by us as 1%. | CLSI / EUCAST | 548 | 450 | 3 | 1 | + | |
| Mehl | Norway | Nord-Trøndelag Hospital Trust | Unselected sepsis cases | 2002 - 13 | Missing susceptibility results supplied on demand. | EUCAST | 586 | 483 | 4 | 1 | + |
Ref: Reference; no: number; NICU: Newborn Intensive Care Unit; HAI: Hospital acquired infection; CAI: Community acquired infection; CLSI: Clinical & Laboratory Standards Institute; EUCAST: European Committee on Antimicrobial Susceptibility Testing; BSAC: British Society for Antimicrobial Chemotherapy; NCCLS: National Committee for Clinical Laboratory Standards; NG: not given; ICU: Intensive Care Unit; PICU: Pediatric Intensive Care Unit; GNB: Gram-negative bacteria; UTI: Urinary tract infection.
Correlation between proportion of Acinetobacter spp. and rates of antimicrobial resistance among Enterobateriaceae, from simple correlation to more statistically sound calculations on log scale accounting for observation uncertainty due to limited number of samples. (Based on reports from European and African institutions).
| Measurement | Correlation with 95% confidence interval |
|---|---|
| a) Basic correlation of proportions | 0.85 [0. 74, 0.95] |
| b) Correlation of proportions on log scale | 0.88 [0.78, 0.97] |
| c) Correlation of proportions on log scale; accounting for observation uncertainty |
Confidence intervals for (a) and (b) calculated by bootstrap replications.
Calculated using Bayesian Gibbssampler assuming multivariate normal distributions and flat priors.
Fig. 2Correlation between Proportion of Acinetobacter spp. (see text), and resistance towards third generation Cephalosporins among Enterobacteriaceae; Left (a) absolute proportions, right (b) proportions on log scale with fitted regression line. (Based on reports from European and African institutions).