Literature DB >> 31368491

Competing Endogenous RNA Networks Underlying Anatomical and Physiological Characteristics of Poplar Wood in Acclimation to Low Nitrogen Availability.

Yan Lu1, Shurong Deng1, Zhuorong Li1, Jiangting Wu1, Qifeng Liu1, Wenzhe Liu1, Wen-Jian Yu1, Yuhong Zhang1, Wenguang Shi1, Jing Zhou1, Hong Li2, Andrea Polle3, Zhi-Bin Luo1.   

Abstract

Although poplar plantations are often established on nitrogen (N)-poor soil, the physiological and molecular mechanisms underlying wood properties of poplars in acclimation to low N availability remain largely unknown. To investigate wood properties of poplars in acclimation to low N, Populus � canescens saplings were exposed to either 50 (low N) or 500 (normal N) �M NH4NO3 for 2 months. Low N resulted in decreased xylem width and cell layers of the xylem (the number of cells counted along the ray parenchyma on the stem cross section), narrower lumina of vessels and fibers, greater thickness of double fiber walls (the walls between two adjacent fiber cells), more hemicellulose and lignin deposition, and reduced cellulose accumulation in poplar wood. Consistently, concentrations of gibberellins involved in cell size determination and the abundance of various metabolites including amino acids, carbohydrates and precursors for cell wall biosynthesis were decreased in low N-supplied wood. In line with these anatomical and physiological changes, a number of mRNAs, long noncoding RNAs (lncRNAs) and microRNAs (miRNAs) were significantly differentially expressed. Competing endogenous RNA regulatory networks were identified in the wood of low N-treated poplars. Overall, these results indicate that miRNAs-lncRNAs-mRNAs networks are involved in regulating wood properties and physiological processes of poplars in acclimation to low N availability. � The Author(s) 2019. Published by Oxford University Press on behalf of Japanese Society of Plant Physiologists. All rights reserved. For permissions, please email: journals.permissions@oup.com.

Entities:  

Keywords:  zzm321990 Populuszzm321990 ; Amino acids; Carbohydrates; Metabolomics; Phytohormones; Secondary xylem

Mesh:

Substances:

Year:  2019        PMID: 31368491     DOI: 10.1093/pcp/pcz146

Source DB:  PubMed          Journal:  Plant Cell Physiol        ISSN: 0032-0781            Impact factor:   4.927


  9 in total

1.  Identification and expression analysis of the PtGATL genes under different nitrogen and carbon dioxide treatments in Populus trichocarpa.

Authors:  Zhiru Xu; Chunpu Qu; Juanfang Suo; Shuang Zhang; Caifeng Xu; Ruhui Chang; Xiuyue Xu; Guanjun Liu; Chuanping Yang
Journal:  3 Biotech       Date:  2022-02-11       Impact factor: 2.406

2.  Genome-Wide Identification and Characterization of Long Noncoding RNAs in Populus × canescens Roots Treated With Different Nitrogen Fertilizers.

Authors:  Jing Zhou; Ling-Yu Yang; Xin Chen; Weng-Guang Shi; Shu-Rong Deng; Zhi-Bin Luo
Journal:  Front Plant Sci       Date:  2022-05-12       Impact factor: 6.627

3.  Genome-wide identification of BXL genes in Populus trichocarpa and their expression under different nitrogen treatments.

Authors:  Jinyuan Chen; Chunpu Qu; Ruhui Chang; Juanfang Suo; Jiajie Yu; Xue Sun; Guanjun Liu; Zhiru Xu
Journal:  3 Biotech       Date:  2020-01-22       Impact factor: 2.406

4.  Identification and characterization of circular RNAs during wood formation of poplars in acclimation to low nitrogen availability.

Authors:  Huimin Liu; Wanwen Yu; Jiangting Wu; Zhuorong Li; Hui Li; Jing Zhou; Jingjing Hu; Yan Lu
Journal:  Planta       Date:  2020-01-10       Impact factor: 4.116

5.  Genome-wide analysis of UGDH genes in Populus trichocarpa and responsiveness to nitrogen treatment.

Authors:  Zhiru Xu; Chunpu Qu; Shuang Zhang; Lina Cao; Xue Sun; Jiajie Yu; Xiuyue Xu; Ruhui Chang; Juanfang Suo; Guanjun Liu
Journal:  3 Biotech       Date:  2021-02-27       Impact factor: 2.406

6.  Bioinformatics analysis of PAE family in Populus trichocarpa and responsiveness to carbon and nitrogen treatment.

Authors:  Chunpu Qu; Guanjun Liu; Caifeng Xu; Shuang Zhang; Juanfang Suo; Ruhui Chang; Xiuyue Xu; Zhiru Xu; Chuanping Yang
Journal:  3 Biotech       Date:  2021-07-13       Impact factor: 2.893

Review 7.  Synergies and Entanglement in Secondary Cell Wall Development and Abiotic Stress Response in Trees.

Authors:  Heather D Coleman; Amy M Brunner; Chung-Jui Tsai
Journal:  Front Plant Sci       Date:  2021-03-19       Impact factor: 5.753

8.  Nitrate/ammonium-responsive microRNA-mRNA regulatory networks affect root system architecture in Populus × canescens.

Authors:  Jing Zhou; Jiang-Ting Wu
Journal:  BMC Plant Biol       Date:  2022-03-04       Impact factor: 4.215

9.  Identification and Functional Prediction of Poplar Root circRNAs Involved in Treatment With Different Forms of Nitrogen.

Authors:  Jing Zhou; Ling-Yu Yang; Chen-Lin Jia; Wen-Guang Shi; Shu-Rong Deng; Zhi-Bin Luo
Journal:  Front Plant Sci       Date:  2022-07-08       Impact factor: 6.627

  9 in total

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