Literature DB >> 31365252

Intracellular Trapping of the Selective Phosphoglycerate Dehydrogenase (PHGDH) Inhibitor BI-4924 Disrupts Serine Biosynthesis.

Harald Weinstabl1, Matthias Treu1, Joerg Rinnenthal1, Stephan K Zahn1, Peter Ettmayer1, Gerd Bader1, Georg Dahmann2, Dirk Kessler1, Klaus Rumpel1, Nikolai Mischerikow1, Fabio Savarese1, Thomas Gerstberger1, Moriz Mayer1, Andreas Zoephel1, Renate Schnitzer1, Wolfgang Sommergruber1, Paola Martinelli1, Heribert Arnhof1, Biljana Peric-Simov1, Karin S Hofbauer1, Géraldine Garavel1, Yvonne Scherbantin1, Sophie Mitzner1, Thomas N Fett1, Guido Scholz1, Jens Bruchhaus1, Michelle Burkard1, Roland Kousek1, Tuncay Ciftci2, Bernadette Sharps1, Andreas Schrenk1, Christoph Harrer1, Daniela Haering1, Bernhard Wolkerstorfer1, Xuechun Zhang3, Xiaobing Lv3, Alicia Du3, Dongyang Li3, Yali Li3, Jens Quant1, Mark Pearson1, Darryl B McConnell1.   

Abstract

Phosphoglycerate dehydrogenase (PHGDH) is known to be the rate-limiting enzyme in the serine synthesis pathway in humans. It converts glycolysis-derived 3-phosphoglycerate to 3-phosphopyruvate in a co-factor-dependent oxidation reaction. Herein, we report the discovery of BI-4916, a prodrug of the co-factor nicotinamide adenine dinucleotide (NADH/NAD+)-competitive PHGDH inhibitor BI-4924, which has shown high selectivity against the majority of other dehydrogenase targets. Starting with a fragment-based screening, a subsequent hit optimization using structure-based drug design was conducted to deliver a single-digit nanomolar lead series and to improve potency by 6 orders of magnitude. To this end, an intracellular ester cleavage mechanism of the ester prodrug was utilized to achieve intracellular enrichment of the actual carboxylic acid based drug and thus overcome high cytosolic levels of the competitive cofactors NADH/NAD+.

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Year:  2019        PMID: 31365252     DOI: 10.1021/acs.jmedchem.9b00718

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  16 in total

1.  The PHGDH enigma: Do cancer cells only need serine or also a redox modulator?

Authors:  Albert M Li; Jiangbin Ye
Journal:  Cancer Lett       Date:  2020-02-04       Impact factor: 8.679

Review 2.  The ins and outs of serine and glycine metabolism in cancer.

Authors:  Shauni L Geeraerts; Elien Heylen; Kim De Keersmaecker; Kim R Kampen
Journal:  Nat Metab       Date:  2021-01-28

3.  Biophysical and biochemical properties of PHGDH revealed by studies on PHGDH inhibitors.

Authors:  Yuping Tan; Xia Zhou; Yanqiu Gong; Kun Gou; Youfu Luo; Da Jia; Lunzhi Dai; Yinglan Zhao; Qingxiang Sun
Journal:  Cell Mol Life Sci       Date:  2021-12-31       Impact factor: 9.261

4.  Systemic evolutionary chemical space exploration for drug discovery.

Authors:  Chong Lu; Shien Liu; Weihua Shi; Jun Yu; Zhou Zhou; Xiaoxiao Zhang; Xiaoli Lu; Faji Cai; Ning Xia; Yikai Wang
Journal:  J Cheminform       Date:  2022-04-01       Impact factor: 5.514

Review 5.  Targeting allosteric regulation of cancer metabolism.

Authors:  Daniel M Kremer; Costas A Lyssiotis
Journal:  Nat Chem Biol       Date:  2022-04-28       Impact factor: 16.174

6.  Proteogenomic Landscape of Breast Cancer Tumorigenesis and Targeted Therapy.

Authors:  Karsten Krug; Eric J Jaehnig; Shankha Satpathy; Lili Blumenberg; Alla Karpova; Meenakshi Anurag; George Miles; Philipp Mertins; Yifat Geffen; Lauren C Tang; David I Heiman; Song Cao; Yosef E Maruvka; Jonathan T Lei; Chen Huang; Ramani B Kothadia; Antonio Colaprico; Chet Birger; Jarey Wang; Yongchao Dou; Bo Wen; Zhiao Shi; Yuxing Liao; Maciej Wiznerowicz; Matthew A Wyczalkowski; Xi Steven Chen; Jacob J Kennedy; Amanda G Paulovich; Mathangi Thiagarajan; Christopher R Kinsinger; Tara Hiltke; Emily S Boja; Mehdi Mesri; Ana I Robles; Henry Rodriguez; Thomas F Westbrook; Li Ding; Gad Getz; Karl R Clauser; David Fenyö; Kelly V Ruggles; Bing Zhang; D R Mani; Steven A Carr; Matthew J Ellis; Michael A Gillette
Journal:  Cell       Date:  2020-11-18       Impact factor: 41.582

Review 7.  A Review of Small-Molecule Inhibitors of One-Carbon Enzymes: SHMT2 and MTHFD2 in the Spotlight.

Authors:  Christine R Cuthbertson; Zahra Arabzada; Armand Bankhead; Armita Kyani; Nouri Neamati
Journal:  ACS Pharmacol Transl Sci       Date:  2021-03-01

8.  Serine biosynthesis defect due to haploinsufficiency of PHGDH causes retinal disease.

Authors:  Kevin Eade; Marin L Gantner; Joseph A Hostyk; Takayuki Nagasaki; Christian M Metallo; Martin Friedlander; Rando Allikmets; Sarah Giles; Regis Fallon; Sarah Harkins-Perry; Michelle Baldini; Esther W Lim; Lea Scheppke; Michael I Dorrell; Carolyn Cai; Evan H Baugh; Charles J Wolock; Martina Wallace; Rebecca B Berlow; David B Goldstein
Journal:  Nat Metab       Date:  2021-03-22

Review 9.  3-Phosphoglycerate dehydrogenase: a potential target for cancer treatment.

Authors:  Mingxue Li; Canrong Wu; Yueying Yang; Mengzhu Zheng; Silin Yu; Jinhui Wang; Lixia Chen; Hua Li
Journal:  Cell Oncol (Dordr)       Date:  2021-03-18       Impact factor: 6.730

Review 10.  Targeting Amino Acid Metabolic Vulnerabilities in Myeloid Malignancies.

Authors:  Livingstone Fultang; Luciana Gneo; Carmela De Santo; Francis J Mussai
Journal:  Front Oncol       Date:  2021-05-20       Impact factor: 6.244

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