Literature DB >> 31365233

Simplify: A Mass Spectrometry Metabolomics Approach to Identify Additives and Synergists from Complex Mixtures.

Lindsay K Caesar1, Sabina Nogo1, Cassandra N Naphen1, Nadja B Cech1.   

Abstract

In fields ranging from environmental toxicology to drug discovery, it is critical to identify how multiple chemical compounds interact to perturb biological systems. Isolation-based approaches fail to incorporate multiconstituent interactions, such as synergy. We have developed an approach called "Simplify", which identifies mixture constituents that interact to achieve biological effects. Simplify combines biological and mass spectrometric data sets and uses an "activity index" to predict mixture interactions. Using the plant Salvia miltiorrhiza as a case study, we employed Simplify to identify four individual constituents that contribute to antimicrobial activity, three additives and one synergist. Our study is the first to enable identification of unknown synergists prior to isolating them, demonstrating the ability of the Simplify workflow to predict key contributors to the biological effect of a complex mixture. While utilized for natural products discovery in this study, this approach is expected to prove useful across multiple disciplines that rely on mixture analysis.

Entities:  

Year:  2019        PMID: 31365233      PMCID: PMC6817979          DOI: 10.1021/acs.analchem.9b02377

Source DB:  PubMed          Journal:  Anal Chem        ISSN: 0003-2700            Impact factor:   6.986


  40 in total

1.  EUCAST Definitive Document E.Def 1.2, May 2000: Terminology relating to methods for the determination of susceptibility of bacteria to antimicrobial agents.

Authors: 
Journal:  Clin Microbiol Infect       Date:  2000-09       Impact factor: 8.067

Review 2.  Complex interactions between phytochemicals. The multi-target therapeutic concept of phytotherapy.

Authors:  Thomas Efferth; Egon Koch
Journal:  Curr Drug Targets       Date:  2011-01       Impact factor: 3.465

Review 3.  Drug development from natural products: exploiting synergistic effects.

Authors:  Gudrun Ulrich-Merzenich; D Panek; H Zeitler; H Vetter; H Wagner
Journal:  Indian J Exp Biol       Date:  2010-03       Impact factor: 0.818

4.  Discriminating variable test and selectivity ratio plot: quantitative tools for interpretation and variable (biomarker) selection in complex spectral or chromatographic profiles.

Authors:  Tarja Rajalahti; Reidar Arneberg; Ann C Kroksveen; Magnus Berle; Kjell-Morten Myhr; Olav M Kvalheim
Journal:  Anal Chem       Date:  2009-04-01       Impact factor: 6.986

5.  Bacterial lipids activate, synergize, and inhibit a developmental switch in choanoflagellates.

Authors:  Arielle Woznica; Alexandra M Cantley; Christine Beemelmanns; Elizaveta Freinkman; Jon Clardy; Nicole King
Journal:  Proc Natl Acad Sci U S A       Date:  2016-06-27       Impact factor: 11.205

6.  Hierarchical cluster analysis of technical replicates to identify interferents in untargeted mass spectrometry metabolomics.

Authors:  Lindsay K Caesar; Olav M Kvalheim; Nadja B Cech
Journal:  Anal Chim Acta       Date:  2018-03-19       Impact factor: 6.558

7.  Biochemometrics to Identify Synergists and Additives from Botanical Medicines: A Case Study with Hydrastis canadensis (Goldenseal).

Authors:  Emily R Britton; Joshua J Kellogg; Olav M Kvalheim; Nadja B Cech
Journal:  J Nat Prod       Date:  2017-11-01       Impact factor: 4.050

8.  Antibacterial activities of cryptotanshinone and dihydrotanshinone I from a medicinal herb, Salvia miltiorrhiza Bunge.

Authors:  D S Lee; S H Lee; J G Noh; S D Hong
Journal:  Biosci Biotechnol Biochem       Date:  1999-12       Impact factor: 2.043

9.  High-throughput synergy screening identifies microbial metabolites as combination agents for the treatment of fungal infections.

Authors:  Lixin Zhang; Kezhi Yan; Yu Zhang; Ren Huang; Jiang Bian; Chuansen Zheng; Haixiang Sun; Zhihui Chen; Nuo Sun; Rong An; Fangui Min; Weibo Zhao; Ying Zhuo; Jianlan You; Yongjie Song; Zhenyan Yu; Zhiheng Liu; Keqian Yang; Hong Gao; Huanqin Dai; Xiaoli Zhang; Jian Wang; Chengzhang Fu; Gang Pei; Jintao Liu; Si Zhang; Michael Goodfellow; Yuanying Jiang; Jun Kuai; Guochun Zhou; Xiaoping Chen
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-05       Impact factor: 11.205

10.  Synergistic activation of human pregnane X receptor by binary cocktails of pharmaceutical and environmental compounds.

Authors:  Vanessa Delfosse; Béatrice Dendele; Tiphaine Huet; Marina Grimaldi; Abdelhay Boulahtouf; Sabine Gerbal-Chaloin; Bertrand Beucher; Dominique Roecklin; Christina Muller; Roger Rahmani; Vincent Cavaillès; Martine Daujat-Chavanieu; Valérie Vivat; Jean-Marc Pascussi; Patrick Balaguer; William Bourguet
Journal:  Nat Commun       Date:  2015-09-03       Impact factor: 14.919

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  4 in total

Review 1.  Metabolomics and genomics in natural products research: complementary tools for targeting new chemical entities.

Authors:  Lindsay K Caesar; Rana Montaser; Nancy P Keller; Neil L Kelleher
Journal:  Nat Prod Rep       Date:  2021-11-17       Impact factor: 13.423

2.  The Natural Products Atlas: An Open Access Knowledge Base for Microbial Natural Products Discovery.

Authors:  Jeffrey A van Santen; Grégoire Jacob; Amrit Leen Singh; Victor Aniebok; Marcy J Balunas; Derek Bunsko; Fausto Carnevale Neto; Laia Castaño-Espriu; Chen Chang; Trevor N Clark; Jessica L Cleary Little; David A Delgadillo; Pieter C Dorrestein; Katherine R Duncan; Joseph M Egan; Melissa M Galey; F P Jake Haeckl; Alex Hua; Alison H Hughes; Dasha Iskakova; Aswad Khadilkar; Jung-Ho Lee; Sanghoon Lee; Nicole LeGrow; Dennis Y Liu; Jocelyn M Macho; Catherine S McCaughey; Marnix H Medema; Ram P Neupane; Timothy J O'Donnell; Jasmine S Paula; Laura M Sanchez; Anam F Shaikh; Sylvia Soldatou; Barbara R Terlouw; Tuan Anh Tran; Mercia Valentine; Justin J J van der Hooft; Duy A Vo; Mingxun Wang; Darryl Wilson; Katherine E Zink; Roger G Linington
Journal:  ACS Cent Sci       Date:  2019-11-14       Impact factor: 14.553

3.  Computation-Assisted Identification of Bioactive Compounds in Botanical Extracts: A Case Study of Anti-Inflammatory Natural Products from Hops.

Authors:  Kevin S Brown; Paige Jamieson; Wenbin Wu; Ashish Vaswani; Armando Alcazar Magana; Jaewoo Choi; Luce M Mattio; Paul Ha-Yeon Cheong; Dylan Nelson; Patrick N Reardon; Cristobal L Miranda; Claudia S Maier; Jan F Stevens
Journal:  Antioxidants (Basel)       Date:  2022-07-19

4.  From Treatise to Test: Evaluating Traditional Remedies for Anti-Biofilm Potential.

Authors:  Snehal Kadam; Vandana Madhusoodhanan; Anuradha Bandgar; Karishma S Kaushik
Journal:  Front Pharmacol       Date:  2020-10-28       Impact factor: 5.810

  4 in total

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