Literature DB >> 31365144

Multigene Biomarkers of Pyrethroid Exposure: Exploratory Experiments.

Mitchell S Kostich1, David C Bencic1, Angela L Batt1, Mary J See1, Robert W Flick1, Denise A Gordon1, Jim M Lazorchak1, Adam D Biales1.   

Abstract

We describe initial development of microarray-based assays for detecting 4 pyrethroid pesticides (bifenthrin, cypermethrin, esfenvalerate, and permethrin) in water. To facilitate comparison of transcriptional responses with gross apical responses, we estimated concentration-mortality curves for these pyrethroids using flow-through exposures of newly hatched Daphnia magna, Pimephales promelas adults, and 24 h posthatch P. promelas. Median lethal concentration (LC50) estimates were below most reported values, perhaps attributable to the use of flow-through exposures or of measured rather than nominal concentrations. Microarray analysis of whole P. promelas larvae and brains from exposed P. promelas adults showed that assays using either tissue type can detect these pyrethroids at concentrations below LC50 values reported for between 72 and 96% of aquatic species, depending on the pesticide. These estimates are conservative because they correspond to the lowest concentrations tested. This suggests that the simpler and less expensive whole-larval assay provides adequate sensitivity for screening contexts where acute aquatic lethality is observed, but the responsible agent is not known. Gene set analysis (GSA) highlighted several Gene Ontology (GO) terms consistent with known pyrethroid action, but the implications of other GO terms are less clear. Exploration of the sensitivity of results to changes in data processing suggests robustness of the detection assay results, but GSA results were sensitive to methodological variations. Environ Toxicol Chem 2019;38:2436-2446. Published 2019 Wiley Periodicals, Inc. on behalf of SETAC. This article is a US government work, and as such, is in the public domain in the United States of America. Published 2019 Wiley Periodicals, Inc. on behalf of SETAC. This article is a US government work, and as such, is in the public domain in the United States of America.

Entities:  

Keywords:  Aquatic; Fish; Gene expression; Microarray; Pyrethroid

Mesh:

Substances:

Year:  2019        PMID: 31365144      PMCID: PMC7836324          DOI: 10.1002/etc.4552

Source DB:  PubMed          Journal:  Environ Toxicol Chem        ISSN: 0730-7268            Impact factor:   4.218


  29 in total

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Authors:  Rolf Apweiler; Amos Bairoch; Cathy H Wu; Winona C Barker; Brigitte Boeckmann; Serenella Ferro; Elisabeth Gasteiger; Hongzhan Huang; Rodrigo Lopez; Michele Magrane; Maria J Martin; Darren A Natale; Claire O'Donovan; Nicole Redaschi; Lai-Su L Yeh
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

2.  A comparison of normalization methods for high density oligonucleotide array data based on variance and bias.

Authors:  B M Bolstad; R A Irizarry; M Astrand; T P Speed
Journal:  Bioinformatics       Date:  2003-01-22       Impact factor: 6.937

Review 3.  A genomic and ecotoxicological perspective of DNA array studies in aquatic environmental risk assessment.

Authors:  Benjamin Piña; Carlos Barata
Journal:  Aquat Toxicol       Date:  2011-06-12       Impact factor: 4.964

Review 4.  Fish 'n' chips: the use of microarrays for aquatic toxicology.

Authors:  Nancy D Denslow; Natàlia Garcia-Reyero; David S Barber
Journal:  Mol Biosyst       Date:  2006-12-07

5.  Gene expression profiling in Daphnia magna, part II: validation of a copper specific gene expression signature with effluent from two copper mines in California.

Authors:  Helen C Poynton; Rick Zuzow; Alexandre V Loguinov; Edward J Perkins; Chris D Vulpe
Journal:  Environ Sci Technol       Date:  2008-08-15       Impact factor: 9.028

6.  The Gene Ontology (GO) project: structured vocabularies for molecular biology and their application to genome and expression analysis.

Authors:  Judith A Blake; Midori A Harris
Journal:  Curr Protoc Bioinformatics       Date:  2008-09

7.  Sequencing and de novo draft assemblies of a fathead minnow (Pimephales promelas) reference genome.

Authors:  Frank R Burns; Amarin L Cogburn; Gerald T Ankley; Daniel L Villeneuve; Eric Waits; Yun-Juan Chang; Victor Llaca; Stephane D Deschamps; Raymond E Jackson; Robert Alan Hoke
Journal:  Environ Toxicol Chem       Date:  2015-10-29       Impact factor: 3.742

8.  Classification of hepatotoxicants using HepG2 cells: A proof of principle study.

Authors:  Wim F P M Van den Hof; Maarten L J Coonen; Marcel van Herwijnen; Karen Brauers; Will K W H Wodzig; Joost H M van Delft; Jos C S Kleinjans
Journal:  Chem Res Toxicol       Date:  2014-01-28       Impact factor: 3.739

9.  Identification and optimization of classifier genes from multi-class earthworm microarray dataset.

Authors:  Ying Li; Nan Wang; Edward J Perkins; Chaoyang Zhang; Ping Gong
Journal:  PLoS One       Date:  2010-10-28       Impact factor: 3.240

Review 10.  Differential actions of insecticides on target sites: basis for selective toxicity.

Authors:  T Narahashi; X Zhao; T Ikeda; K Nagata; J Z Yeh
Journal:  Hum Exp Toxicol       Date:  2007-04       Impact factor: 2.903

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  1 in total

1.  Assessment of the risk of death of Clarias gariepinus and Oreochromis niloticus pulse-exposed to selected agricultural pesticides.

Authors:  Kingsley Chukwuemeka Kanu; Adebayo Akeem Otitoloju; Nnamdi Henry Amaeze
Journal:  Sci Rep       Date:  2021-07-19       Impact factor: 4.379

  1 in total

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