Literature DB >> 31364647

Imaging mass spectrometry for natural products discovery: a review of ionization methods.

Joseph E Spraker1, Gordon T Luu2, Laura M Sanchez2.   

Abstract

Covering: 2009-2019 Over the last decade, methods in imaging mass spectrometry (IMS) have progressively improved and diversified toward a variety of applications in natural products research. Because IMS allows for the spatial mapping of the production and distribution of biologically active molecules in situ, it facilitates phenotype and organelle driven discovery efforts. As practitioners of IMS for natural products discovery, we find one of the most important aspects of these experiments is the sample preparation and compatibility with different ionization sources that are available to a given researcher. As such, we have focused this mini review to cover types of ionization sources that have been used in natural products discovery applications and provided concrete examples of use for natural products discovery while discussing the advantages and limitations of each method. We aim for this article to serve as a resource to guide the broader natural product community interested in IMS toward the application/method that would best serve their natural product discovery needs given the sample and analyte(s) of interest. This mini review has been limited to applications using natural products and thus is not exhaustive of all possible ionization methods which have only been applied to image other types of samples such as mammalian tissues. Additionally, we briefly review how IMS has been coupled with other imaging platforms, such as microscopy, to enhance information outputs as well as offer our future perspectives on the incorporation of IMS in natural products discovery.

Entities:  

Year:  2020        PMID: 31364647      PMCID: PMC6992513          DOI: 10.1039/c9np00038k

Source DB:  PubMed          Journal:  Nat Prod Rep        ISSN: 0265-0568            Impact factor:   13.423


  64 in total

1.  Homogeneous matrix deposition on dried agar for MALDI imaging mass spectrometry of microbial cultures.

Authors:  Thomas Hoffmann; Pieter C Dorrestein
Journal:  J Am Soc Mass Spectrom       Date:  2015-08-22       Impact factor: 3.109

2.  Linking metabolite production to taxonomic identity in environmental samples by (MA)LDI-FISH.

Authors:  Martin Kaltenpoth; Kerstin Strupat; Aleš Svatoš
Journal:  ISME J       Date:  2015-07-14       Impact factor: 10.302

3.  imzML--a common data format for the flexible exchange and processing of mass spectrometry imaging data.

Authors:  Thorsten Schramm; Zoë Hester; Ivo Klinkert; Jean-Pierre Both; Ron M A Heeren; Alain Brunelle; Olivier Laprévote; Nicolas Desbenoit; Marie-France Robbe; Markus Stoeckli; Bernhard Spengler; Andreas Römpp
Journal:  J Proteomics       Date:  2012-07-26       Impact factor: 4.044

4.  Exploration of Fungal Metabolic Interactions Using Imaging Mass Spectrometry on Nanostructured Silicon.

Authors:  Pi-Yu Chen; Chi-Ying Hsieh; Chao-Jen Shih; Yuan-Jing Lin; Chia-Wen Tsao; Yu-Liang Yang
Journal:  J Nat Prod       Date:  2018-06-19       Impact factor: 4.050

5.  MSiReader v1.0: Evolving Open-Source Mass Spectrometry Imaging Software for Targeted and Untargeted Analyses.

Authors:  Mark T Bokhart; Milad Nazari; Kenneth P Garrard; David C Muddiman
Journal:  J Am Soc Mass Spectrom       Date:  2017-09-20       Impact factor: 3.109

6.  IR-MALDESI Mass Spectrometry Imaging at 50 Micron Spatial Resolution.

Authors:  Mark T Bokhart; Jeffrey Manni; Kenneth P Garrard; Måns Ekelöf; Milad Nazari; David C Muddiman
Journal:  J Am Soc Mass Spectrom       Date:  2017-07-18       Impact factor: 3.109

7.  Mass spectrometry sampling under ambient conditions with desorption electrospray ionization.

Authors:  Zoltán Takáts; Justin M Wiseman; Bogdan Gologan; R Graham Cooks
Journal:  Science       Date:  2004-10-15       Impact factor: 47.728

8.  Batch-processing of imaging or liquid-chromatography mass spectrometry datasets and De Novo sequencing of polyketide siderophores.

Authors:  Jiří Novák; Lucie Sokolová; Karel Lemr; Tomáš Pluháček; Andrea Palyzová; Vladimír Havlíček
Journal:  Biochim Biophys Acta Proteins Proteom       Date:  2016-12-09       Impact factor: 3.036

9.  A Pair of Bacterial Siderophores Releases and Traps an Intercellular Signal Molecule: An Unusual Case of Natural Nitrone Bioconjugation.

Authors:  Felix Trottmann; Jakob Franke; Keishi Ishida; María García-Altares; Christian Hertweck
Journal:  Angew Chem Int Ed Engl       Date:  2018-12-04       Impact factor: 15.336

10.  Imaging Mass Spectrometry Reveals Crosstalk between the Fallopian Tube and the Ovary that Drives Primary Metastasis of Ovarian Cancer.

Authors:  Katherine E Zink; Matthew Dean; Joanna E Burdette; Laura M Sanchez
Journal:  ACS Cent Sci       Date:  2018-10-09       Impact factor: 14.553

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  16 in total

1.  Evaluation of Data Analysis Platforms and Compatibility with MALDI-TOF Imaging Mass Spectrometry Data Sets.

Authors:  Gordon T Luu; Alanna R Condren; Lisa Juliane Kahl; Lars E P Dietrich; Laura M Sanchez
Journal:  J Am Soc Mass Spectrom       Date:  2020-05-07       Impact factor: 3.109

2.  Integrating ion mobility and imaging mass spectrometry for comprehensive analysis of biological tissues: A brief review and perspective.

Authors:  Emilio S Rivera; Katerina V Djambazova; Elizabeth K Neumann; Richard M Caprioli; Jeffrey M Spraggins
Journal:  J Mass Spectrom       Date:  2020-09-21       Impact factor: 1.982

3.  Spatial Metabolomics and Imaging Mass Spectrometry in the Age of Artificial Intelligence.

Authors:  Theodore Alexandrov
Journal:  Annu Rev Biomed Data Sci       Date:  2020-04-13

Review 4.  Advancements in capturing and mining mass spectrometry data are transforming natural products research.

Authors:  Scott A Jarmusch; Justin J J van der Hooft; Pieter C Dorrestein; Alan K Jarmusch
Journal:  Nat Prod Rep       Date:  2021-11-17       Impact factor: 13.423

5.  Mass spectrometry imaging: new eyes on natural products for drug research and development.

Authors:  Jin-Jun Hou; Zi-Jia Zhang; Wen-Yong Wu; Qing-Qing He; Teng-Qian Zhang; Ya-Wen Liu; Zhao-Jun Wang; Lei Gao; Hua-Li Long; Min Lei; Wan-Ying Wu; De-An Guo
Journal:  Acta Pharmacol Sin       Date:  2022-10-13       Impact factor: 7.169

Review 6.  Biologically active marine natural products and their molecular targets discovered using a chemical genetics approach.

Authors:  David E Williams; Raymond J Andersen
Journal:  Nat Prod Rep       Date:  2019-11-21       Impact factor: 13.423

7.  Feature-Based Molecular Network-Guided Dereplication of Natural Bioactive Products from Leaves of Stryphnodendron pulcherrimum (Willd.) Hochr.

Authors:  Paulo Gomes; Luis Quirós-Guerrero; Consuelo Silva; Sônia Pamplona; Jean A Boutin; Marcos Eberlin; Jean-Luc Wolfender; Milton Silva
Journal:  Metabolites       Date:  2021-04-29

Review 8.  New software tools, databases, and resources in metabolomics: updates from 2020.

Authors:  Biswapriya B Misra
Journal:  Metabolomics       Date:  2021-05-11       Impact factor: 4.290

Review 9.  Models for measuring metabolic chemical changes in the metastasis of high grade serous ovarian cancer: fallopian tube, ovary, and omentum.

Authors:  Hannah Lusk; Joanna E Burdette; Laura M Sanchez
Journal:  Mol Omics       Date:  2021-12-06

10.  Orthogonal Method for Double-Bond Placement via Ozone-Induced Dissociation Mass Spectrometry (OzID-MS).

Authors:  Sonja L Knowles; Ngoc Vu; Daniel A Todd; Huzefa A Raja; Antonis Rokas; Qibin Zhang; Nicholas H Oberlies
Journal:  J Nat Prod       Date:  2019-12-11       Impact factor: 4.803

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