| Literature DB >> 31364528 |
Xinyu Wu1, Feng Zang2, Mei Liu2, Lingyun Zhuo2, Jingjing Wu2, Xueshan Xia3, Yue Feng3, Rongbin Yu4, Peng Huang4, Sheng Yang5.
Abstract
Human innate immune plays an essential role in the spontaneous clearance of acute infection and therapy of HCV. We investigated whether the SNPs in retinoic acid-inducible gene I-like receptor family were associated with HCV spontaneous clearance and response to treatment. To evaluate the clinical value of DDX58 rs3824456, rs10813831 and rs10738889 genotypes on HCV spontaneous clearance and treatment response in Chinese Han population, we genotyped 1001 HCV persistent infectors, 599 participants with HCV natural clearance and 354 patients with PEGylated interferon-α and ribavirin (PEG IFN-α/RBV) treatment. People carrying rs10813831-G allele genotype were more liable to achieve spontaneous clearance than the carriage of the T allele (dominant model: adjusted OR 1.35, 95% CI 1.08-1.71, P = 0.008). In rs10738889, the rate of persistent infection was significantly lower in patients with the TC genotype compared to those with TT genotype (dominant model: adjusted OR 1.36, 95% CI 1.06-1.74, P = 0.015). Multivariate stepwise analysis indicated that rs10738889, age, alanine aminotransferase (ALT) and aspartate aminotransferase (AST) were independent predictors for HCV spontaneous clearance. However, there were no significant differences in the three selection SNPs between the non-SVR group and the SVR group. These results suggest the DDX58 rs10813831 and rs10738889 are associated with spontaneous clearance of HCV, which may be identified as a predictive marker in the Chinese Han population of HCV.Entities:
Keywords: Gene polymorphism; RIG-I; hepatitis C; spontaneous clearance
Mesh:
Substances:
Year: 2019 PMID: 31364528 PMCID: PMC6518566 DOI: 10.1017/S0950268819000827
Source DB: PubMed Journal: Epidemiol Infect ISSN: 0950-2688 Impact factor: 2.451
Demographic characteristics in subjects with different HCV infection outcomes
| Variables | Spontaneous clearance | Persistent infection | |
|---|---|---|---|
| Age (year) | 49.66 ± 13.60 | 54.10 ± 11.84 | <0.001 |
| <50 | 255 (42.57) | 280 (27.97) | <0.001 |
| ⩾50 | 344 (57.43) | 721 (72.03) | |
| Gender (%) | 0.293 | ||
| Male | 217 (36.29) | 336 (33.70) | |
| Female | 381 (63.71) | 661 (66.30) | |
| AST (%) | 33.72 ± 32.73 | 47.31 ± 37.79 | <0.001 |
| <40 | 474 (79.13) | 567 (56.64) | <0.001 |
| ⩾40 | 125 (20.87) | 434 (43.36) | |
| ALT (%) | 35.43 ± 44.64 | 46.51 ± 46.30 | <0.001 |
| <40 | 469 (78.30) | 606 (60.54) | <0.001 |
| ⩾40 | 130 (21.70) | 395 (39.46) |
AST, aspartate transaminase; ALT, alanine aminotransferase.
Distribution of DDX58 genotypes among subjects with different HCV infection outcomes
| Genotype | Spontaneous clearance | Persistent infection | OR (95% CI) | |
|---|---|---|---|---|
| rs3824456 | ||||
| GG | 295 (51.66) | 501 (53.30) | 1.00 | – |
| GA | 232 (40.63) | 362 (38.51) | 0.97 (0.77–1.22) | 0.784 |
| AA | 44 (7.71) | 77 (8.19) | 1.21 (0.74–1.69) | 0.584 |
| Dominant | 0.96 (0.78–1.19) | 0.740 | ||
| Recessive | 1.12 (0.75–1.66) | 0.592 | ||
| Additive | 1.02 (0.86–1.21) | 0.824 | ||
| rs10813831 | ||||
| GG | 409 (69.91) | 553 (56.89) | 1.00 | – |
| GT | 145 (24.79) | 350 (36.01) | 1.42 (1.11–1.82) | 0.005 |
| TT | 31 (5.30) | 69 (7.10) | 1.41 (0.89–2.24) | 0.138 |
| Dominant | 1.41 (1.12–1.77) | 0.004 | ||
| Recessive | 1.25 (0.79–1.95) | 0.339 | ||
| Additive | 1.29 (1.07–1.56) | 0.007 | ||
| rs10738889 | ||||
| TT | 200 (34.97) | 288 (29.60) | 1.00 | – |
| TC | 239 (41.78) | 477 (49.02) | 1.36 (1.06–1.74) | 0.015 |
| CC | 133 (23.25) | 208 (21.38) | 1.16 (0.86–1.56) | 0.319 |
| Dominant | 1.31 (1.06–1.64) | 0.014 | ||
| Recessive | 0.99 (0.76–1.28) | 0.934 | ||
| Additive | 1.10 (0.95–1.28) | 0.204 |
Logistic regression analyses adjusted for age, gender, ALT and AST.
Multivariate stepwise regression analysis for independent factors of HCV chronicity
| Variables | Coef. | OR (95% CI) | ||
|---|---|---|---|---|
| rs10738889 | 0.16 | 0.05 | 1.17 (1.05–1.29) | 0.002 |
| ALT | 1.36 | 0.14 | 3.89 (2.98–5.10) | <0.001 |
| Age | 0.40 | 0.10 | 0.67 (0.55–0.82) | <0.001 |
| AST | 1.25 | 0.13 | 3.49 (2.71–4.50) | <0.001 |
AST, aspartate transaminase; ALT, alanine aminotransferase.
Stratified analysis of rs10738889 genotypes among subjects with different HCV infection outcomes
| Stratified characteristics | Spontaneous clearance | Persistent infection | OR (95% CI) | ||||||
|---|---|---|---|---|---|---|---|---|---|
| TT | TC | CC | TT | TC | CC | ||||
| Age | 0.045 | ||||||||
| <50 | 59 (40.69) | 41 (28.28) | 45 (31.03) | 35 (28.23) | 48 (38.71) | 41 (33.06) | 1.26 (0.94–1.71) | 0.126 | |
| ⩾50 | 141 (33.02) | 198 (46.37) | 88 (20.61) | 253 (29.80) | 429 (50.53) | 167 (19.67) | 1.05 (0.89–1.25) | 0.546 | |
| ALT | 0.009 | ||||||||
| <40 | 140 (31.25) | 197 (43.97) | 111 (24.78) | 169 (28.79) | 297 (50.60) | 121 (20.61) | 1.19 (0.96–1.47) | 0.109 | |
| ⩾40 | 60 (48.39) | 42 (33.87) | 22 (17.74) | 119 (30.83) | 180 (46.63) | 87 (22.54) | 1.68 (1.13–2.50) | 0.010 | |
| AST | 0.0265 | ||||||||
| <40 | 148 (32.67) | 195 (43.05) | 10 (24.28) | 169 (30.90) | 265 (48.45) | 113 (20.66) | 1.23 (0.99–1.52) | 0.065 | |
| ⩾40 | 52 (43.70) | 44 (36.97) | 23 (19.33) | 119 (27.93) | 212 (49.77) | 95 (22.30) | 1.49 (1.11–2.01) | 0.007 | |
AST, aspartate transaminase; ALT, alanine aminotransferase; OR, odds ratios; 95%CI, 95% confidence intervals.
The P-value was calculated by the logistic regression model, adjusted by age, ALT and AST in addictive model (GG vs. GT vs. TT for rs10738889).
The P-value was the result of the heterogeneity test.
Baseline clinical characteristics of chronic hepatitis C patients
| N-SVR | SVR | ||
|---|---|---|---|
| Variables | |||
| Age (year) | 53.54 ± 8.09 | 53.70 ± 8.58 | 0.870 |
| <50 | 36 (30.00) | 74 (31.62) | 0.755 |
| ⩾50 | 84 (70.00) | 160 (68.38) | |
| Sex (%) | 0.697 | ||
| Male | 29 (24.17) | 61 (26.07) | |
| Female | 91 (75.83) | 173 (73.93) | |
| AST ⩾ 40 U/L (%) | 69 (57.50) | 124 (52.99) | 0.420 |
| ALT ⩾ 40 U/L (%) | 78 (65.00) | 140 (59.83) | 0.344 |
| Baseline RNA | 6.15 ± 0.81 | 5.95 ± 0.90 | 0.046 |
| TP(g/L) | 77.76 ± 5.90 | 78.28 ± 5.97 | 0.437 |
| ALB(g/L) | 42.66 ± 4.22 | 43.71 ± 4.07 | 0.024 |
| GLU (mmol/L) | 6.34 ± 1.64 | 5.76 ± 1.54 | 0.001 |
| AFP (ng/mL) | 13.12 ± 30.00 | 6.23 ± 15.15 | 0.007 |
| TSH (nmol/L) | 2.80 ± 1.78 | 3.84 ± 7.68 | 0.145 |
| HGB (g/L) | 132.92 ± 17.50 | 134.31 ± 16.15 | 0.456 |
| Platelets (109/L) | 121.72 ± 59.85 | 135.94 ± 52.75 | 0.023 |
| WBC (109/L) | 4.87 ± 2.63 | 5.00 ± 1.76 | 0.578 |
N-SVR, non-sustained virological response; SVR, sustained virological response; AST, aspartate transaminase; ALT, alanine aminotransferase; TP, total protein; ALB, albumin; GLU, glucose; AFP, α foetal protein; TSH, thyrotropin; HGB, haemoglobin; WBC, white blood cell.
Distribution of DDX58 genotypes among chronic hepatitis C patients
| Genotype | N-SVR | SVR | SVR rate (%) | OR (95% CI) | |
|---|---|---|---|---|---|
| rs3824456 | |||||
| 65 (55.08) | 129 (56.83) | 66.49 | 1.00 | – | |
| 46 (38.98) | 82 (36.12) | 64.06 | 0.91 (0.55–1.52) | 0.724 | |
| 7 (5.94) | 16 (7.05) | 69.57 | 1.01 (0.32–3.14) | 0.991 | |
| Dominant | 0.88 (0.54–1.44) | 0.623 | |||
| Recessive | 1.04 (0.34–3.19) | 0.939 | |||
| Additive | 0.95 (0.63–1.44) | 0.812 | |||
| rs10813831 | |||||
| 17 (89.17) | 209 (91.27) | 92.48 | 1.00 | – | |
| 6 (5.00) | 9 (3.93) | 60.00 | 0.75 (0.23–2.41) | 0.624 | |
| 7 (5.83) | 11 (4.80) | 61.11 | 0.77 (0.27–2.18) | 0.623 | |
| Dominant | 0.75 (0.34–1.67) | 0.479 | |||
| Recessive | 0.77 (0.27–2.18) | 0.625 | |||
| Additive | 0.86 (0.53–1.39) | 0.533 | |||
| rs10738889 | |||||
| 50 (43.10) | 99 (44.00) | 66.44 | 1.00 | – | |
| 55 (47.41) | 97 (43.11) | 63.82 | 0.88 (0.52–1.47) | 0.615 | |
| 11 (9.49) | 29 (12.89) | 72.50 | 1.50 (0.62–3.59) | 0.367 | |
| Dominant | 0.97 (0.60–1.58) | 0.910 | |||
| Recessive | 1.63 (0.71–3.75) | 0.247 | |||
| Additive | 1.08 (0.75–1.57) | 0.670 |
SVR, sustained virological response; N-SVR, non-sustained virological response.
Logistic regression analyses are adjusted for ALB, GLU, AFP, platelets, baseline RNA.