Literature DB >> 31361488

A Physical Organic Approach to Tuning Reagents for Selective and Stable Methionine Bioconjugation.

Alec H Christian1, Shang Jia1, Wendy Cao1, Patricia Zhang1, Arismel Tena Meza1, Matthew S Sigman2, Christopher J Chang1,3,4, F Dean Toste1.   

Abstract

We report a data-driven, physical organic approach to the development of new methionine-selective bioconjugation reagents with tunable adduct stabilities. Statistical modeling of structural features described by intrinsic physical organic parameters was applied to the development of a predictive model and to gain insight into features driving the stability of adducts formed from the chemoselective coupling of oxaziridine and methionine thioether partners through Redox Activated Chemical Tagging (ReACT). From these analyses, a correlation between sulfimide stabilities and sulfimide ν (C═O) stretching frequencies was revealed. We exploited the rational gains in adduct stability exposed by this analysis to achieve the design and synthesis of a bis-oxaziridine reagent for peptide stapling. Indeed, we observed that a macrocyclic peptide formed by ReACT stapling at methionine exhibited improved uptake into live cells compared to an unstapled congener, highlighting the potential utility of this unique chemical tool for thioether modification. This work provides a template for the broader use of data-driven approaches to bioconjugation chemistry and other chemical biology applications.

Entities:  

Year:  2019        PMID: 31361488      PMCID: PMC6781863          DOI: 10.1021/jacs.9b04744

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

1.  Stabilization of peptides for intracellular applications by phosphoramidate-linked polyethylene glycol chains.

Authors:  Nicole Nischan; Alokta Chakrabarti; Remigiusz A Serwa; Petra H M Bovee-Geurts; Roland Brock; Christian P R Hackenberger
Journal:  Angew Chem Int Ed Engl       Date:  2013-08-22       Impact factor: 15.336

2.  Palladium Oxidative Addition Complexes for Peptide and Protein Cross-linking.

Authors:  Koji Kubota; Peng Dai; Bradley L Pentelute; Stephen L Buchwald
Journal:  J Am Chem Soc       Date:  2018-02-13       Impact factor: 15.419

3.  Redox-based reagents for chemoselective methionine bioconjugation.

Authors:  Shixian Lin; Xiaoyu Yang; Shang Jia; Amy M Weeks; Michael Hornsby; Peter S Lee; Rita V Nichiporuk; Anthony T Iavarone; James A Wells; F Dean Toste; Christopher J Chang
Journal:  Science       Date:  2017-02-10       Impact factor: 47.728

4.  Reversible alkylation of an active site methionine residue in dehydroquinase.

Authors:  C Kleanthous; J R Coggins
Journal:  J Biol Chem       Date:  1990-07-05       Impact factor: 5.157

5.  Enantiodivergent Fluorination of Allylic Alcohols: Data Set Design Reveals Structural Interplay between Achiral Directing Group and Chiral Anion.

Authors:  Andrew J Neel; Anat Milo; Matthew S Sigman; F Dean Toste
Journal:  J Am Chem Soc       Date:  2016-03-11       Impact factor: 15.419

6.  Organic chemistry. A data-intensive approach to mechanistic elucidation applied to chiral anion catalysis.

Authors:  Anat Milo; Andrew J Neel; F Dean Toste; Matthew S Sigman
Journal:  Science       Date:  2015-02-13       Impact factor: 47.728

7.  Efficient Palladium-Assisted One-Pot Deprotection of (Acetamidomethyl)Cysteine Following Native Chemical Ligation and/or Desulfurization To Expedite Chemical Protein Synthesis.

Authors:  Suman Kumar Maity; Muhammad Jbara; Shay Laps; Ashraf Brik
Journal:  Angew Chem Int Ed Engl       Date:  2016-04-29       Impact factor: 15.336

8.  A perfluoroaryl-cysteine S(N)Ar chemistry approach to unprotected peptide stapling.

Authors:  Alexander M Spokoyny; Yekui Zou; Jingjing J Ling; Hongtao Yu; Yu-Shan Lin; Bradley L Pentelute
Journal:  J Am Chem Soc       Date:  2013-04-16       Impact factor: 15.419

9.  A thioether-directed palladium-cleavable linker for targeted bioorthogonal drug decaging.

Authors:  Benjamin J Stenton; Bruno L Oliveira; Maria J Matos; Laura Sinatra; Gonçalo J L Bernardes
Journal:  Chem Sci       Date:  2018-04-06       Impact factor: 9.825

10.  Palladium prompted on-demand cysteine chemistry for the synthesis of challenging and uniquely modified proteins.

Authors:  Muhammad Jbara; Shay Laps; Michael Morgan; Guy Kamnesky; Guy Mann; Cynthia Wolberger; Ashraf Brik
Journal:  Nat Commun       Date:  2018-08-08       Impact factor: 14.919

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  8 in total

Review 1.  Activity-Based Sensing: A Synthetic Methods Approach for Selective Molecular Imaging and Beyond.

Authors:  Kevin J Bruemmer; Steven W M Crossley; Christopher J Chang
Journal:  Angew Chem Int Ed Engl       Date:  2020-04-23       Impact factor: 15.336

2.  Systematic identification of engineered methionines and oxaziridines for efficient, stable, and site-specific antibody bioconjugation.

Authors:  Susanna K Elledge; Hai L Tran; Alec H Christian; Veronica Steri; Byron Hann; F Dean Toste; Christopher J Chang; James A Wells
Journal:  Proc Natl Acad Sci U S A       Date:  2020-03-02       Impact factor: 11.205

3.  Selenomethionine as an expressible handle for bioconjugations.

Authors:  Dillon T Flood; Jordi C J Hintzen; Kyle W Knouse; David E Hill; Chenxi Lu; Philip A Cistrone; Jason S Chen; Takanori Otomo; Philip E Dawson
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-23       Impact factor: 11.205

4.  Methionine oxidation activates pyruvate kinase M2 to promote pancreatic cancer metastasis.

Authors:  Dan He; Huijin Feng; Belen Sundberg; Jiaxing Yang; Justin Powers; Alec H Christian; John E Wilkinson; Cian Monnin; Daina Avizonis; Craig J Thomas; Richard A Friedman; Michael D Kluger; Michael A Hollingsworth; Paul M Grandgenett; Kelsey A Klute; F Dean Toste; Christopher J Chang; Iok In Christine Chio
Journal:  Mol Cell       Date:  2022-06-24       Impact factor: 19.328

5.  Preparation of Biomolecule-Polymer Conjugates by Grafting-From Using ATRP, RAFT, or ROMP.

Authors:  Marco S Messina; Kathryn M M Messina; Arvind Bhattacharya; Hayden R Montgomery; Heather D Maynard
Journal:  Prog Polym Sci       Date:  2019-11-18       Impact factor: 29.190

Review 6.  The emerging landscape of single-molecule protein sequencing technologies.

Authors:  Javier Antonio Alfaro; Peggy Bohländer; Mingjie Dai; Mike Filius; Cecil J Howard; Xander F van Kooten; Shilo Ohayon; Adam Pomorski; Sonja Schmid; Amit Meller; Chirlmin Joo; Aleksei Aksimentiev; Eric V Anslyn; Georges Bedran; Chan Cao; Mauro Chinappi; Etienne Coyaud; Cees Dekker; Gunnar Dittmar; Nicholas Drachman; Rienk Eelkema; David Goodlett; Sébastien Hentz; Umesh Kalathiya; Neil L Kelleher; Ryan T Kelly; Zvi Kelman; Sung Hyun Kim; Bernhard Kuster; David Rodriguez-Larrea; Stuart Lindsay; Giovanni Maglia; Edward M Marcotte; John P Marino; Christophe Masselon; Michael Mayer; Patroklos Samaras; Kumar Sarthak; Lusia Sepiashvili; Derek Stein; Meni Wanunu; Mathias Wilhelm; Peng Yin
Journal:  Nat Methods       Date:  2021-06-07       Impact factor: 47.990

7.  Luminol anchors improve the electrochemical-tyrosine-click labelling of proteins.

Authors:  Sébastien Depienne; Dimitri Alvarez-Dorta; Mikael Croyal; Ranil C T Temgoua; Cathy Charlier; David Deniaud; Mathieu Mével; Mohammed Boujtita; Sébastien G Gouin
Journal:  Chem Sci       Date:  2021-11-10       Impact factor: 9.825

8.  Chemoselective bioconjugation based on modular click chemistry with 4-halocoumarins and aryl sulfonates.

Authors:  F Yushra Thanzeel; Christian Wolf
Journal:  RSC Adv       Date:  2021-05-25       Impact factor: 3.361

  8 in total

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