Literature DB >> 31358996

The transcription factor TCF-1 enforces commitment to the innate lymphoid cell lineage.

Christelle Harly1,2,3, Devin Kenney1, Gang Ren4, Binbin Lai4, Tobias Raabe5, Qi Yang6, Margaret C Cam7, Hai-Hui Xue8,9, Keji Zhao4, Avinash Bhandoola10.   

Abstract

Innate lymphoid cells (ILCs) play important functions in immunity and tissue homeostasis, but their development is poorly understood. Through the use of single-cell approaches, we examined the transcriptional and functional heterogeneity of ILC progenitors, and studied the precursor-product relationships that link the subsets identified. This analysis identified two successive stages of ILC development within T cell factor 1-positive (TCF-1+) early innate lymphoid progenitors (EILPs), which we named 'specified EILPs' and 'committed EILPs'. Specified EILPs generated dendritic cells, whereas this potential was greatly decreased in committed EILPs. TCF-1 was dispensable for the generation of specified EILPs, but required for the generation of committed EILPs. TCF-1 used a pre-existing regulatory landscape established in upstream lymphoid precursors to bind chromatin in EILPs. Our results provide insight into the mechanisms by which TCF-1 promotes developmental progression of ILC precursors, while constraining their dendritic cell lineage potential and enforcing commitment to ILC fate.

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Year:  2019        PMID: 31358996      PMCID: PMC6707869          DOI: 10.1038/s41590-019-0445-7

Source DB:  PubMed          Journal:  Nat Immunol        ISSN: 1529-2908            Impact factor:   25.606


  42 in total

1.  Development of thymic and splenic dendritic cell populations from different hemopoietic precursors.

Authors:  L Wu; A D'Amico; H Hochrein; M O'Keeffe; K Shortman; K Lucas
Journal:  Blood       Date:  2001-12-01       Impact factor: 22.113

2.  The earliest thymic progenitors for T cells possess myeloid lineage potential.

Authors:  J Jeremiah Bell; Avinash Bhandoola
Journal:  Nature       Date:  2008-04-10       Impact factor: 49.962

3.  Single-cell reconstruction of developmental trajectories during zebrafish embryogenesis.

Authors:  Jeffrey A Farrell; Yiqun Wang; Samantha J Riesenfeld; Karthik Shekhar; Aviv Regev; Alexander F Schier
Journal:  Science       Date:  2018-04-26       Impact factor: 47.728

4.  STAR: ultrafast universal RNA-seq aligner.

Authors:  Alexander Dobin; Carrie A Davis; Felix Schlesinger; Jorg Drenkow; Chris Zaleski; Sonali Jha; Philippe Batut; Mark Chaisson; Thomas R Gingeras
Journal:  Bioinformatics       Date:  2012-10-25       Impact factor: 6.937

5.  Identification of cDC1- and cDC2-committed DC progenitors reveals early lineage priming at the common DC progenitor stage in the bone marrow.

Authors:  Andreas Schlitzer; V Sivakamasundari; Jinmiao Chen; Hermi Rizal Bin Sumatoh; Jaring Schreuder; Josephine Lum; Benoit Malleret; Sanqian Zhang; Anis Larbi; Francesca Zolezzi; Laurent Renia; Michael Poidinger; Shalin Naik; Evan W Newell; Paul Robson; Florent Ginhoux
Journal:  Nat Immunol       Date:  2015-06-08       Impact factor: 25.606

6.  TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis.

Authors:  Zhicheng Ji; Hongkai Ji
Journal:  Nucleic Acids Res       Date:  2016-05-13       Impact factor: 16.971

7.  The epigenetic landscape of T cell exhaustion.

Authors:  Debattama R Sen; James Kaminski; R Anthony Barnitz; Makoto Kurachi; Ulrike Gerdemann; Kathleen B Yates; Hsiao-Wei Tsao; Jernej Godec; Martin W LaFleur; Flavian D Brown; Pierre Tonnerre; Raymond T Chung; Damien C Tully; Todd M Allen; Nicole Frahm; Georg M Lauer; E John Wherry; Nir Yosef; W Nicholas Haining
Journal:  Science       Date:  2016-10-27       Impact factor: 47.728

8.  Plasmacytoid dendritic cells activate lymphoid-specific genetic programs irrespective of their cellular origin.

Authors:  Hirokazu Shigematsu; Boris Reizis; Hiromi Iwasaki; Shin-ichi Mizuno; Dan Hu; David Traver; Philip Leder; Nobuo Sakaguchi; Koichi Akashi
Journal:  Immunity       Date:  2004-07       Impact factor: 31.745

9.  A committed precursor to innate lymphoid cells.

Authors:  Michael G Constantinides; Benjamin D McDonald; Philip A Verhoef; Albert Bendelac
Journal:  Nature       Date:  2014-02-09       Impact factor: 49.962

10.  Development and differentiation of early innate lymphoid progenitors.

Authors:  Christelle Harly; Maggie Cam; Jonathan Kaye; Avinash Bhandoola
Journal:  J Exp Med       Date:  2017-11-28       Impact factor: 14.307

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  35 in total

1.  TFH cells depend on Tcf1-intrinsic HDAC activity to suppress CTLA4 and guard B-cell help function.

Authors:  Fengyin Li; Xin Zhao; Yali Zhang; Peng Shao; Xiaoke Ma; William J Paradee; Chengyu Liu; Jianmin Wang; Hai-Hui Xue
Journal:  Proc Natl Acad Sci U S A       Date:  2021-01-12       Impact factor: 11.205

2.  E proteins orchestrate dynamic transcriptional cascades implicated in the suppression of the differentiation of group 2 innate lymphoid cells.

Authors:  Vincent Peng; Constantin Georgescu; Anna Bakowska; Aneta Pankow; Liangyue Qian; Jonathan D Wren; Xiao-Hong Sun
Journal:  J Biol Chem       Date:  2020-08-19       Impact factor: 5.157

3.  Dynamic control of the T-cell specification gene regulatory network.

Authors:  Ellen V Rothenberg
Journal:  Curr Opin Syst Biol       Date:  2019-11-06

Review 4.  ILC Differentiation from Progenitors in the Bone Marrow.

Authors:  Arundhoti Das; Christelle Harly; Yi Ding; Avinash Bhandoola
Journal:  Adv Exp Med Biol       Date:  2022       Impact factor: 2.622

5.  cLoops2: a full-stack comprehensive analytical tool for chromatin interactions.

Authors:  Yaqiang Cao; Shuai Liu; Gang Ren; Qingsong Tang; Keji Zhao
Journal:  Nucleic Acids Res       Date:  2022-01-11       Impact factor: 16.971

Review 6.  TCF1 in T cell immunity: a broadened frontier.

Authors:  Xudong Zhao; Qiang Shan; Hai-Hui Xue
Journal:  Nat Rev Immunol       Date:  2021-06-14       Impact factor: 53.106

Review 7.  Single-cell insights into the hematopoietic generation of T-lymphocyte precursors in mouse and human.

Authors:  Ellen V Rothenberg
Journal:  Exp Hematol       Date:  2021-01-14       Impact factor: 3.084

Review 8.  The Route of Early T Cell Development: Crosstalk between Epigenetic and Transcription Factors.

Authors:  Veronica Della Chiara; Lucia Daxinger; Frank J T Staal
Journal:  Cells       Date:  2021-04-30       Impact factor: 6.600

9.  In Situ Maturation and Tissue Adaptation of Type 2 Innate Lymphoid Cell Progenitors.

Authors:  Patrice Zeis; Mi Lian; Xiying Fan; Josip S Herman; Daniela C Hernandez; Rebecca Gentek; Shlomo Elias; Cornelia Symowski; Konrad Knöpper; Nina Peltokangas; Christin Friedrich; Remi Doucet-Ladeveze; Agnieszka M Kabat; Richard M Locksley; David Voehringer; Marc Bajenoff; Alexander Y Rudensky; Chiara Romagnani; Dominic Grün; Georg Gasteiger
Journal:  Immunity       Date:  2020-09-30       Impact factor: 31.745

10.  Group 2 innate lymphoid cells are numerically and functionally deficient in the triple transgenic mouse model of Alzheimer's disease.

Authors:  Ivan Ting Hin Fung; Yuanyue Zhang; Damian S Shin; Poornima Sankar; Xiangwan Sun; Shanti S D'Souza; Renjie Song; Marcy L Kuentzel; Sridar V Chittur; Kristen L Zuloaga; Qi Yang
Journal:  J Neuroinflammation       Date:  2021-07-06       Impact factor: 8.322

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