Literature DB >> 31356778

An arsenal of methods for the experimental characterization of intrinsically disordered proteins - How to choose and combine them?

Antoine Schramm1, Christophe Bignon1, Stefania Brocca2, Rita Grandori2, Carlo Santambrogio2, Sonia Longhi3.   

Abstract

In this review, we detail the most common experimental approaches to assess and characterize protein intrinsic structural disorder, with the notable exception of NMR and EPR spectroscopy, two ideally suited approaches that will be described in depth in two other reviews within this special issue. We discuss the advantages, the limitations, as well as the caveats of the various methods. We also describe less common and more demanding approaches that enable achieving further insights into the conformational properties of IDPs. Finally, we present recent developments that have enabled assessment of structural disorder in living cells, and discuss the currently available methods to model IDPs as conformational ensembles.
Copyright © 2019 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Degree of compactness; Ensemble models; Experimental assessment of protein disorder; In-vivo assessment of disorder; Secondary and tertiary structure content

Year:  2019        PMID: 31356778     DOI: 10.1016/j.abb.2019.07.020

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  13 in total

Review 1.  Understanding the Binding Induced Folding of Intrinsically Disordered Proteins by Protein Engineering: Caveats and Pitfalls.

Authors:  Francesca Malagrinò; Lorenzo Visconti; Livia Pagano; Angelo Toto; Francesca Troilo; Stefano Gianni
Journal:  Int J Mol Sci       Date:  2020-05-15       Impact factor: 5.923

2.  The Anti-Inflammatory Protein TNIP1 Is Intrinsically Disordered with Structural Flexibility Contributed by Its AHD1-UBAN Domain.

Authors:  Rambon Shamilov; Olga Vinogradova; Brian J Aneskievich
Journal:  Biomolecules       Date:  2020-11-10

Review 3.  The Disordered Cellular Multi-Tasker WIP and Its Protein-Protein Interactions: A Structural View.

Authors:  Chana G Sokolik; Nasrin Qassem; Jordan H Chill
Journal:  Biomolecules       Date:  2020-07-21

Review 4.  Liquid-Liquid Phase Separation by Intrinsically Disordered Protein Regions of Viruses: Roles in Viral Life Cycle and Control of Virus-Host Interactions.

Authors:  Stefania Brocca; Rita Grandori; Sonia Longhi; Vladimir Uversky
Journal:  Int J Mol Sci       Date:  2020-11-28       Impact factor: 5.923

5.  Structural and Functional Characterization of the ABA-Water Deficit Stress Domain from Wheat and Barley: An Intrinsically Disordered Domain behind the Versatile Functions of the Plant Abscissic Acid, Stress and Ripening Protein Family.

Authors:  Ines Yacoubi; Karama Hamdi; Patrick Fourquet; Christophe Bignon; Sonia Longhi
Journal:  Int J Mol Sci       Date:  2021-02-26       Impact factor: 5.923

6.  Conformational dynamics promotes disordered regions from function-dispensable to essential in evolved site-specific DNA recombinases.

Authors:  Carla Guillén-Pingarrón; Pedro M Guillem-Gloria; Anjali Soni; Gloria Ruiz-Gómez; Martina Augsburg; Frank Buchholz; Massimiliano Anselmi; M Teresa Pisabarro
Journal:  Comput Struct Biotechnol J       Date:  2022-01-22       Impact factor: 7.271

7.  Unfolding bovine α-lactalbumin with T-jump: Characterizing disordered intermediates via time-resolved x-ray solution scattering and molecular dynamics simulations.

Authors:  Darren J Hsu; Denis Leshchev; Irina Kosheleva; Kevin L Kohlstedt; Lin X Chen
Journal:  J Chem Phys       Date:  2021-03-14       Impact factor: 3.488

8.  Conserved Outer Tegument Component UL11 from Herpes Simplex Virus 1 Is an Intrinsically Disordered, RNA-Binding Protein.

Authors:  Claire M Metrick; Andrea L Koenigsberg; Ekaterina E Heldwein
Journal:  mBio       Date:  2020-05-05       Impact factor: 7.867

Review 9.  Biological physics by high-speed atomic force microscopy.

Authors:  Ignacio Casuso; Lorena Redondo-Morata; Felix Rico
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-10-26       Impact factor: 4.226

10.  Experimental Evidence of Intrinsic Disorder and Amyloid Formation by the Henipavirus W Proteins.

Authors:  Giulia Pesce; Frank Gondelaud; Denis Ptchelkine; Juliet F Nilsson; Christophe Bignon; Jérémy Cartalas; Patrick Fourquet; Sonia Longhi
Journal:  Int J Mol Sci       Date:  2022-01-15       Impact factor: 5.923

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