| Literature DB >> 31353431 |
Ling Pei1, Da-Zhi Li2, Li-Juan Zhang2.
Abstract
The present study is aimed at probing the hydrogen bonding interaction between epinephrine and uracil by means of density functional theory calculations concerning their complexation's geometries, interaction energies, and vibrational frequencies. Geometry optimization was carried out giving 19 stable geometries of epinephrine-uracil complex with interaction energies in a range of - 21.51 to - 62.37 kJ mol-1 using the basis set superposition error (BSSE) correction. The analysis of structure and vibration shows that the hydrogen bonding elongates the length of corresponding bond O(N)-H and decreases the symmetric stretching vibrational frequency, which indicates red-shifted H-bonding interactions in all the geometries. Additionally, the analysis with theories of natural bond orbital (NBO), atoms in molecules (AIM), and the reduced density gradient (RDG) of hydrogen bonding properties and characteristics of the 19 geometries suggests that the hydrogen bonding in all the optimized structures of epinephrine-uracil complex is kind of a closed-shell interaction and mainly electrostatic dominant.Entities:
Keywords: AIM; DFT method; Epinephrine; Hydrogen bond; NBO; RDG; Uracil
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Year: 2019 PMID: 31353431 DOI: 10.1007/s00894-019-4123-3
Source DB: PubMed Journal: J Mol Model ISSN: 0948-5023 Impact factor: 1.810