Literature DB >> 31342427

Size Determination of Protein Oligomers/Aggregates Using Diffusion NMR Spectroscopy.

Pancham S Kandiyal1, Ji Yoon Kim1, Daniel L Fortunati1, K H Mok2.   

Abstract

Diffusion-ordered spectroscopy (DOSY) is a widely used NMR technique for the identification of different chemical moieties/compounds contained in mixtures and has been successfully employed for the separation of small molecules based on hydrodynamic radii. Herein we show that DOSY can also be applied for the size determination of larger biomolecules such as proteins and protein oligomers/aggregates. Proof-of-principle is first shown with a cross-linked oligomeric protein mixture where the hydrodynamic volumes of each component are estimated and subsequently verified with size-exclusion HPLC and SDS polyacrylamide gel electrophoresis. We then determine the sizes of protein oligomers contained in a protein solution subjected under amyloid fibrillogenesis conditions. These studies aim to provide insight into the kinetics behind protein aggregation involved in amyloidosis as well as to determine the hydrodynamic radii of proteins within the mixture.

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Keywords:  Aggregation; DOSY; Diffusion coefficient; Hydrodynamic radii; Oligomers; Protein; Pulsed-field gradient (PFG); Stokes–Einstein equation

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Year:  2019        PMID: 31342427     DOI: 10.1007/978-1-4939-9678-0_13

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  2 in total

1.  Membrane active Janus-oligomers of β3-peptides.

Authors:  Imola Cs Szigyártó; Judith Mihály; András Wacha; Dóra Bogdán; Tünde Juhász; Gergely Kohut; Gitta Schlosser; Ferenc Zsila; Vlada Urlacher; Zoltán Varga; Ferenc Fülöp; Attila Bóta; István Mándity; Tamás Beke-Somfai
Journal:  Chem Sci       Date:  2020-06-15       Impact factor: 9.825

2.  Quantitative Interpretation of Protein Diffusion Coefficients in Mixed Protiated-Deuteriated Aqueous Solvents.

Authors:  Bridget Tang; Katie Chong; Walter Massefski; Robert Evans
Journal:  J Phys Chem B       Date:  2022-08-02       Impact factor: 3.466

  2 in total

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