Literature DB >> 31338567

Networks of random trees as a model of neuronal connectivity.

Fioralba Ajazi1,2, Valérie Chavez-Demoulin2, Tatyana Turova3,4.   

Abstract

We provide an analysis of a randomly grown 2-d network which models the morphological growth of dendritic and axonal arbors. From the stochastic geometry of this model we derive a dynamic graph of potential synaptic connections. We estimate standard network parameters such as degree distribution, average shortest path length and clustering coefficient, considering all these parameters as functions of time. Our results show that even a simple model with just a few parameters is capable of representing a wide spectra of architecture, capturing properties of well-known models, such as random graphs or small world networks, depending on the time of the network development. The introduced model allows not only rather straightforward simulations but it is also amenable to a rigorous analysis. This provides a base for further study of formation of synaptic connections on such networks and their dynamics due to plasticity.

Entities:  

Keywords:  Branching process; Neuronal network; Random graph

Year:  2019        PMID: 31338567      PMCID: PMC6800872          DOI: 10.1007/s00285-019-01406-8

Source DB:  PubMed          Journal:  J Math Biol        ISSN: 0303-6812            Impact factor:   2.259


  28 in total

Review 1.  Measures for quantifying dendritic arborizations.

Authors:  Harry B M Uylings; Jaap van Pelt
Journal:  Network       Date:  2002-08       Impact factor: 1.273

2.  Branching rates and growth functions in the outgrowth of dendritic branching patterns.

Authors:  Jaap van Pelt; Harry B M Uylings
Journal:  Network       Date:  2002-08       Impact factor: 1.273

3.  The projection of the lateral geniculate nucleus to area 17 of the rat cerebral cortex. I. General description.

Authors:  A Peters; M L Feldman
Journal:  J Neurocytol       Date:  1976-02

4.  Collective dynamics of 'small-world' networks.

Authors:  D J Watts; S H Strogatz
Journal:  Nature       Date:  1998-06-04       Impact factor: 49.962

5.  The effects of neuron morphology on graph theoretic measures of network connectivity: the analysis of a two-level statistical model.

Authors:  Jugoslava Aćimović; Tuomo Mäki-Marttunen; Marja-Leena Linne
Journal:  Front Neuroanat       Date:  2015-06-10       Impact factor: 3.856

Review 6.  Graph analysis of the human connectome: promise, progress, and pitfalls.

Authors:  Alex Fornito; Andrew Zalesky; Michael Breakspear
Journal:  Neuroimage       Date:  2013-04-30       Impact factor: 6.556

7.  NETMORPH: a framework for the stochastic generation of large scale neuronal networks with realistic neuron morphologies.

Authors:  Randal A Koene; Betty Tijms; Peter van Hees; Frank Postma; Alexander de Ridder; Ger J A Ramakers; Jaap van Pelt; Arjen van Ooyen
Journal:  Neuroinformatics       Date:  2009-08-12

8.  Reconstruction and Simulation of Neocortical Microcircuitry.

Authors:  Henry Markram; Eilif Muller; Srikanth Ramaswamy; Michael W Reimann; Marwan Abdellah; Carlos Aguado Sanchez; Anastasia Ailamaki; Lidia Alonso-Nanclares; Nicolas Antille; Selim Arsever; Guy Antoine Atenekeng Kahou; Thomas K Berger; Ahmet Bilgili; Nenad Buncic; Athanassia Chalimourda; Giuseppe Chindemi; Jean-Denis Courcol; Fabien Delalondre; Vincent Delattre; Shaul Druckmann; Raphael Dumusc; James Dynes; Stefan Eilemann; Eyal Gal; Michael Emiel Gevaert; Jean-Pierre Ghobril; Albert Gidon; Joe W Graham; Anirudh Gupta; Valentin Haenel; Etay Hay; Thomas Heinis; Juan B Hernando; Michael Hines; Lida Kanari; Daniel Keller; John Kenyon; Georges Khazen; Yihwa Kim; James G King; Zoltan Kisvarday; Pramod Kumbhar; Sébastien Lasserre; Jean-Vincent Le Bé; Bruno R C Magalhães; Angel Merchán-Pérez; Julie Meystre; Benjamin Roy Morrice; Jeffrey Muller; Alberto Muñoz-Céspedes; Shruti Muralidhar; Keerthan Muthurasa; Daniel Nachbaur; Taylor H Newton; Max Nolte; Aleksandr Ovcharenko; Juan Palacios; Luis Pastor; Rodrigo Perin; Rajnish Ranjan; Imad Riachi; José-Rodrigo Rodríguez; Juan Luis Riquelme; Christian Rössert; Konstantinos Sfyrakis; Ying Shi; Julian C Shillcock; Gilad Silberberg; Ricardo Silva; Farhan Tauheed; Martin Telefont; Maria Toledo-Rodriguez; Thomas Tränkler; Werner Van Geit; Jafet Villafranca Díaz; Richard Walker; Yun Wang; Stefano M Zaninetta; Javier DeFelipe; Sean L Hill; Idan Segev; Felix Schürmann
Journal:  Cell       Date:  2015-10-08       Impact factor: 41.582

9.  Information diversity in structure and dynamics of simulated neuronal networks.

Authors:  Tuomo Mäki-Marttunen; Jugoslava Aćimović; Matti Nykter; Juha Kesseli; Keijo Ruohonen; Olli Yli-Harja; Marja-Leena Linne
Journal:  Front Comput Neurosci       Date:  2011-06-01       Impact factor: 2.380

10.  Structural and functional properties of a probabilistic model of neuronal connectivity in a simple locomotor network.

Authors:  Andrea Ferrario; Robert Merrison-Hort; Stephen R Soffe; Roman Borisyuk
Journal:  Elife       Date:  2018-03-28       Impact factor: 8.140

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  2 in total

1.  Primal-size neural circuits in meta-periodic interaction.

Authors:  Yoram Baram
Journal:  Cogn Neurodyn       Date:  2020-07-01       Impact factor: 5.082

2.  Evolutionary Advantages of Stimulus-Driven EEG Phase Transitions in the Upper Cortical Layers.

Authors:  Robert Kozma; Bernard J Baars; Natalie Geld
Journal:  Front Syst Neurosci       Date:  2021-12-08
  2 in total

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