Literature DB >> 31336408

Historical DNA as a tool to address key questions in avian biology and evolution: A review of methods, challenges, applications, and future directions.

Shawn M Billerman1,2, Jennifer Walsh1,2.   

Abstract

Museum specimens play a crucial role in addressing key questions in systematics, evolution, ecology, and conservation. With the advent of high-throughput sequencing technologies, specimens that have long been the foundation of important biological discoveries can inform new perspectives as sources of genomic data. Despite the many possibilities associated with analyzing DNA from historical specimens, several challenges persist. Using avian systems as a model, we review DNA extraction protocols, sequencing technologies, and capture methods that are helping researchers overcome some of these difficulties. We highlight empirical examples in which researchers have used these technologies to address fundamental questions related to avian conservation and evolution. Increasing accessibility to new sequencing technologies will provide researchers with tools to tap into the wealth of information contained within our valuable natural history collections.
© 2019 John Wiley & Sons Ltd.

Entities:  

Keywords:  evolution; genomics; historical DNA; natural history collections; ornithological collections

Mesh:

Substances:

Year:  2019        PMID: 31336408     DOI: 10.1111/1755-0998.13066

Source DB:  PubMed          Journal:  Mol Ecol Resour        ISSN: 1755-098X            Impact factor:   7.090


  6 in total

1.  Robbery in progress: Historical museum collections bring to light a mitochondrial capture within a bird species widespread across southern Australia, the Copperback Quail-thrush Cinclosoma clarum.

Authors:  Kerensa McElroy; Andrew Black; Gaynor Dolman; Philippa Horton; Lynn Pedler; Catriona D Campbell; Alex Drew; Leo Joseph
Journal:  Ecol Evol       Date:  2020-05-31       Impact factor: 2.912

2.  Genetic Diversity of Historical and Modern Populations of Russian Cattle Breeds Revealed by Microsatellite Analysis.

Authors:  Alexandra S Abdelmanova; Veronika R Kharzinova; Valeria V Volkova; Arina I Mishina; Arsen V Dotsev; Alexander A Sermyagin; Oxana I Boronetskaya; Lidia V Petrikeeva; Roman Yu Chinarov; Gottfried Brem; Natalia A Zinovieva
Journal:  Genes (Basel)       Date:  2020-08-14       Impact factor: 4.096

3.  A molecular phylogeny of historical and contemporary specimens of an under-studied micro-invertebrate group.

Authors:  Russell J S Orr; Maja M Sannum; Sanne Boessenkool; Emanuela Di Martino; Dennis P Gordon; Hannah L Mello; Matthias Obst; Mali H Ramsfjell; Abigail M Smith; Lee Hsiang Liow
Journal:  Ecol Evol       Date:  2020-12-09       Impact factor: 2.912

4.  Genomes From Historic DNA Unveil Massive Hidden Extinction and Terminal Endangerment in a Tropical Asian Songbird Radiation.

Authors:  Meng Yue Wu; Clara Jesse Lau; Elize Ying Xin Ng; Pratibha Baveja; Chyi Yin Gwee; Keren Sadanandan; Teuku Reza Ferasyi; Rezky Ramadhan; Jochen K Menner; Frank E Rheindt
Journal:  Mol Biol Evol       Date:  2022-09-01       Impact factor: 8.800

5.  A guide to avian museomics: Insights gained from resequencing hundreds of avian study skins.

Authors:  Martin Irestedt; Filip Thörn; Ingo A Müller; Knud A Jønsson; Per G P Ericson; Mozes P K Blom
Journal:  Mol Ecol Resour       Date:  2022-06-23       Impact factor: 8.678

Review 6.  Unlocking the origins and biology of domestic animals using ancient DNA and paleogenomics.

Authors:  Gillian P McHugo; Michael J Dover; David E MacHugh
Journal:  BMC Biol       Date:  2019-12-02       Impact factor: 7.431

  6 in total

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