Literature DB >> 31334587

Dynamics of Synthetic Membraneless Organelles in Microfluidic Droplets.

Miriam Linsenmeier1, Marie R G Kopp1, Fulvio Grigolato1, Leonidas Emmanoulidis2, Dany Liu1, Dominik Zürcher1, Maria Hondele3, Karsten Weis3, Umberto Capasso Palmiero1, Paolo Arosio1.   

Abstract

Cells can form membraneless organelles by liquid-liquid phase separation. As these organelles are highly dynamic, it is crucial to understand the kinetics of these phase transitions. Here, we use droplet-based microfluidics to mix reagents by chaotic advection and observe nucleation, growth, and coarsening in volumes comparable to cells (pL) and on timescales of seconds. We apply this platform to analyze the dynamics of synthetic organelles formed by the DEAD-box ATPase Dhh1 and RNA, which are associated with the formation of processing bodies in yeast. We show that the timescale of phase separation decreases linearly as the volume of the compartment increases. Moreover, the synthetic organelles coarsen into one single droplet via gravity-induced coalescence, which can be arrested by introducing a hydrogel matrix that mimics the cytoskeleton. This approach is an attractive platform to investigate the dynamics of compartmentalization in artificial cells.
© 2019 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim.

Entities:  

Keywords:  kinetics; membraneless organelles; microfluidics; nonequilibrium processes; phase transitions

Year:  2019        PMID: 31334587     DOI: 10.1002/anie.201907278

Source DB:  PubMed          Journal:  Angew Chem Int Ed Engl        ISSN: 1433-7851            Impact factor:   15.336


  11 in total

1.  Dynamic arrest and aging of biomolecular condensates are modulated by low-complexity domains, RNA and biochemical activity.

Authors:  Miriam Linsenmeier; Maria Hondele; Fulvio Grigolato; Eleonora Secchi; Karsten Weis; Paolo Arosio
Journal:  Nat Commun       Date:  2022-05-31       Impact factor: 17.694

Review 2.  Micro- and Nano-Devices for Studying Subcellular Biology.

Authors:  Michael J Siedlik; Zijian Yang; Parnika S Kadam; James Eberwine; David Issadore
Journal:  Small       Date:  2020-12-20       Impact factor: 13.281

3.  Thermodynamics and kinetics of phase separation of protein-RNA mixtures by a minimal model.

Authors:  Jerelle A Joseph; Jorge R Espinosa; Ignacio Sanchez-Burgos; Adiran Garaizar; Daan Frenkel; Rosana Collepardo-Guevara
Journal:  Biophys J       Date:  2021-02-09       Impact factor: 4.033

4.  Modeling the Structure and Interactions of Intrinsically Disordered Peptides with Multiple Replica, Metadynamics-Based Sampling Methods and Force-Field Combinations.

Authors:  Lunna Li; Tommaso Casalini; Paolo Arosio; Matteo Salvalaglio
Journal:  J Chem Theory Comput       Date:  2022-02-17       Impact factor: 6.578

5.  Connecting Coil-to-Globule Transitions to Full Phase Diagrams for Intrinsically Disordered Proteins.

Authors:  Xiangze Zeng; Alex S Holehouse; Ashutosh Chilkoti; Tanja Mittag; Rohit V Pappu
Journal:  Biophys J       Date:  2020-06-23       Impact factor: 4.033

Review 6.  The Fabrication and Application Mechanism of Microfluidic Systems for High Throughput Biomedical Screening: A Review.

Authors:  Kena Song; Guoqiang Li; Xiangyang Zu; Zhe Du; Liyu Liu; Zhigang Hu
Journal:  Micromachines (Basel)       Date:  2020-03-11       Impact factor: 2.891

7.  Building a community to engineer synthetic cells and organelles from the bottom-up.

Authors:  Oskar Staufer; Jacqueline A De Lora; Eleonora Bailoni; Alisina Bazrafshan; Amelie S Benk; Kevin Jahnke; Zachary A Manzer; Lado Otrin; Telmo Díez Pérez; Judee Sharon; Jan Steinkühler; Katarzyna P Adamala; Bruna Jacobson; Marileen Dogterom; Kerstin Göpfrich; Darko Stefanovic; Susan R Atlas; Michael Grunze; Matthew R Lakin; Andrew P Shreve; Joachim P Spatz; Gabriel P López
Journal:  Elife       Date:  2021-12-20       Impact factor: 8.140

8.  Spatiotemporal Dynamic Assembly/Disassembly of Organelle-Mimics Based on Intrinsically Disordered Protein-Polymer Conjugates.

Authors:  Hang Zhao; Emmanuel Ibarboure; Vusala Ibrahimova; Ye Xiao; Elisabeth Garanger; Sébastien Lecommandoux
Journal:  Adv Sci (Weinh)       Date:  2021-11-01       Impact factor: 16.806

9.  Building programmable multicompartment artificial cells incorporating remotely activated protein channels using microfluidics and acoustic levitation.

Authors:  Jin Li; William D Jamieson; Pantelitsa Dimitriou; Wen Xu; Paul Rohde; Boris Martinac; Matthew Baker; Bruce W Drinkwater; Oliver K Castell; David A Barrow
Journal:  Nat Commun       Date:  2022-07-15       Impact factor: 17.694

Review 10.  Droplet Microfluidics for Tumor Drug-Related Studies and Programmable Artificial Cells.

Authors:  Pantelitsa Dimitriou; Jin Li; Giusy Tornillo; Thomas McCloy; David Barrow
Journal:  Glob Chall       Date:  2021-05-07
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